RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 ZCCHC17Q9NP64 241 aaKnown RBP10.6□□□□□ -0.71
CUX1-206ENST00000437600 SH3GLB2Q9NR46 395 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 ABHD10Q9NUJ1 306 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 CNOT7Q9UIV1 285 aaKnown RBP10.6□□□□□ -0.71
CUX1-206ENST00000437600 DUSP10Q9Y6W6 482 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 FZD9O00144 591 aa10.59□□□□□ -0.71
CUX1-206ENST00000437600 GNA11P29992 359 aa10.59□□□□□ -0.71
CUX1-206ENST00000437600 CYP27A1Q02318 531 aa10.59□□□□□ -0.71
CUX1-206ENST00000437600 ABCB5Q2M3G0 1257 aa10.59□□□□□ -0.71
CUX1-206ENST00000437600 USH1GQ495M9 461 aa10.59□□□□□ -0.71
CUX1-206ENST00000437600 GRIPAP1Q4V328 841 aa10.59□□□□□ -0.71
CUX1-206ENST00000437600 C9orf131Q5VYM1 1079 aa10.59□□□□□ -0.71
CUX1-206ENST00000437600 IDI2Q9BXS1 227 aa10.59□□□□□ -0.71
CUX1-206ENST00000437600 MYOZ2Q9NPC6 264 aa10.59□□□□□ -0.71
CUX1-206ENST00000437600 KBTBD4Q9NVX7 518 aa10.59□□□□□ -0.71
CUX1-206ENST00000437600 LRWD1Q9UFC0 647 aa10.59□□□□□ -0.71
CUX1-206ENST00000437600 DDX41Q9UJV9 622 aaKnown RBP10.59□□□□□ -0.71
CUX1-206ENST00000437600 EPS15P42566 896 aa10.59□□□□□ -0.71
CUX1-206ENST00000437600 SLFN13Q68D06 897 aa10.59□□□□□ -0.71
CUX1-206ENST00000437600 SLC35F6Q8N357 371 aa10.59□□□□□ -0.71
CUX1-206ENST00000437600 KIFC2Q96AC6 838 aa10.59□□□□□ -0.71
CUX1-206ENST00000437600 CTAGE1Q96RT6 745 aa10.59□□□□□ -0.71
CUX1-206ENST00000437600 RIOX1Q9H6W3 641 aa10.59□□□□□ -0.71
CUX1-206ENST00000437600 HDAC6Q9UBN7 1215 aa10.59□□□□□ -0.71
CUX1-206ENST00000437600 A0A1W2PRG0 241 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 SRGAP2O75044 1071 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 PPP2R3AQ06190 1150 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 CALCRLQ16602 461 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 KIF4BQ2VIQ3 1234 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 TRPM4Q8TD43 1214 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 DUSP9Q99956 384 aaKnown RBP10.58□□□□□ -0.72
CUX1-206ENST00000437600 ZHX3Q9H4I2 956 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 BCAS3Q9H6U6 928 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 BRCA2P51587 3418 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 DICER1Q9UPY3 1922 aaKnown RBP10.58□□□□□ -0.72
CUX1-206ENST00000437600 NPHP3-ACAD11A0A0J9YXS1 232 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 MYMKA6NI61 221 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 LRRC10BA6NIK2 292 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 F5H6K3 240 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 PLEKP08567 350 aaPredicted RBP10.58□□□□□ -0.72
CUX1-206ENST00000437600 MAP3K9P80192 1104 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 KLRC3Q07444 240 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 TBC1D8BQ0IIM8 1120 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 ASPRV1Q53RT3 343 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 ACER1Q8TDN7 264 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 LZTS2Q9BRK4 669 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 TUBGCP2Q9BSJ2 902 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 DHX36Q9H2U1 1008 aaKnown RBP10.58□□□□□ -0.72
CUX1-206ENST00000437600 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.58□□□□□ -0.726e-7■■■■■ 48.9
CUX1-206ENST00000437600 ZNF70Q9UC06 446 aaPredicted RBP10.58□□□□□ -0.72
CUX1-206ENST00000437600 LIMA1Q9UHB6 759 aaKnown RBP10.58□□□□□ -0.72
CUX1-206ENST00000437600 HDAC9Q9UKV0 1011 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 SIPA1L1O43166 1804 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 TRIM21P19474 475 aaKnown RBP10.58□□□□□ -0.72
CUX1-206ENST00000437600 KCNJ6P48051 423 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 NOVP48745 357 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 APBA1Q02410 837 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 KCTD19Q17RG1 926 aaPredicted RBP10.58□□□□□ -0.72
CUX1-206ENST00000437600 MB21D1Q8N884 522 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 KIAA0895Q8NCT3 520 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 PANX2Q96RD6 677 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 SUGCTQ9HAC7 445 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 EXOC1Q9NV70 894 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 TMOD2Q9NZR1 351 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 OGFRQ9NZT2 677 aa10.58□□□□□ -0.72
CUX1-206ENST00000437600 PHLPP2Q6ZVD8 1323 aa10.57□□□□□ -0.72
CUX1-206ENST00000437600 SMCHD1A6NHR9 2005 aa10.57□□□□□ -0.72
CUX1-206ENST00000437600 PSMA7O14818 248 aa10.57□□□□□ -0.72
CUX1-206ENST00000437600 POLR3GO15318 223 aaPredicted RBP10.57□□□□□ -0.72
CUX1-206ENST00000437600 TADA3O75528 432 aa10.57□□□□□ -0.72
CUX1-206ENST00000437600 RHOXF2BP0C7M4 288 aa10.57□□□□□ -0.72
CUX1-206ENST00000437600 SNHG28P0DPA3 235 aa10.57□□□□□ -0.72
CUX1-206ENST00000437600 STAT3P40763 770 aa10.57□□□□□ -0.72
CUX1-206ENST00000437600 MTIF2P46199 727 aaKnown RBP10.57□□□□□ -0.72
CUX1-206ENST00000437600 GRB10Q13322 594 aa10.57□□□□□ -0.72
CUX1-206ENST00000437600 TNIP1Q15025 636 aa10.57□□□□□ -0.72
CUX1-206ENST00000437600 SYCP1Q15431 976 aa10.57□□□□□ -0.72
CUX1-206ENST00000437600 ENOX2Q16206 610 aaKnown RBP10.57□□□□□ -0.72
CUX1-206ENST00000437600 TTI2Q6NXR4 508 aa10.57□□□□□ -0.72
CUX1-206ENST00000437600 KRT26Q7Z3Y9 468 aa10.57□□□□□ -0.72
CUX1-206ENST00000437600 KRT25Q7Z3Z0 450 aa10.57□□□□□ -0.72
CUX1-206ENST00000437600 GIMAP8Q8ND71 665 aaPredicted RBP10.57□□□□□ -0.72
CUX1-206ENST00000437600 RHOXF2Q9BQY4 288 aa10.57□□□□□ -0.72
CUX1-206ENST00000437600 FGFBP2Q9BYJ0 223 aa10.57□□□□□ -0.72
CUX1-206ENST00000437600 GLIS2Q9BZE0 524 aaPredicted RBP10.57□□□□□ -0.72
CUX1-206ENST00000437600 CCSER1Q9C0I3 900 aa10.57□□□□□ -0.72
CUX1-206ENST00000437600 SEMA6BQ9H3T3 888 aa10.57□□□□□ -0.72
CUX1-206ENST00000437600 FAM207AQ9NSI2 230 aaPredicted RBP10.57□□□□□ -0.72
CUX1-206ENST00000437600 BLOC1S4Q9NUP1 217 aa10.57□□□□□ -0.72
CUX1-206ENST00000437600 RMND1Q9NWS8 449 aa10.57□□□□□ -0.72
CUX1-206ENST00000437600 H7C1D1 291 aa10.57□□□□□ -0.72
CUX1-206ENST00000437600 CCP110O43303 1012 aa10.57□□□□□ -0.72
CUX1-206ENST00000437600 MYO1BO43795 1136 aa10.57□□□□□ -0.72
CUX1-206ENST00000437600 NDUFB10O96000 172 aa10.57□□□□□ -0.72
CUX1-206ENST00000437600 ADCY7P51828 1080 aa10.57□□□□□ -0.72
CUX1-206ENST00000437600 FKBP1AP62942 108 aaKnown RBP10.57□□□□□ -0.72
CUX1-206ENST00000437600 MRPS25P82663 173 aaKnown RBP10.57□□□□□ -0.72
CUX1-206ENST00000437600 QRICH1Q2TAL8 776 aa10.57□□□□□ -0.72
CUX1-206ENST00000437600 NCAPH2Q6IBW4 605 aa10.57□□□□□ -0.72
CUX1-206ENST00000437600 AGBL3Q8NEM8 1001 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms