RNA–Protein interactions for RNA: ENST00000409783.6

PTCD3-203, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 587 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-203ENST00000409783 COL6A1P12109 1028 aa25.66■■□□□ 1.7
PTCD3-203ENST00000409783 MYCLP12524 364 aaPredicted RBP25.66■■□□□ 1.7
PTCD3-203ENST00000409783 GJA9P57773 515 aa25.66■■□□□ 1.7
PTCD3-203ENST00000409783 DUSP28Q4G0W2 176 aa25.66■■□□□ 1.7
PTCD3-203ENST00000409783 GJC2Q5T442 439 aaPredicted RBP25.66■■□□□ 1.7
PTCD3-203ENST00000409783 CCDC62Q6P9F0 684 aa25.66■■□□□ 1.7
PTCD3-203ENST00000409783 ARRDC4Q8NCT1 418 aa25.66■■□□□ 1.7
PTCD3-203ENST00000409783 KLHDC9Q8NEP7 349 aa25.66■■□□□ 1.7
PTCD3-203ENST00000409783 SCFD2Q8WU76 684 aa25.66■■□□□ 1.7
PTCD3-203ENST00000409783 ZFP91Q96JP5 570 aaPredicted RBP25.66■■□□□ 1.7
PTCD3-203ENST00000409783 MYADML2A6NDP7 307 aa25.65■■□□□ 1.7
PTCD3-203ENST00000409783 DNM1LO00429 736 aa25.65■■□□□ 1.7
PTCD3-203ENST00000409783 ST18O60284 1047 aa25.65■■□□□ 1.7
PTCD3-203ENST00000409783 CCND2P30279 289 aa25.65■■□□□ 1.7
PTCD3-203ENST00000409783 C6orf50Q9HD87 102 aa25.65■■□□□ 1.7
PTCD3-203ENST00000409783 TMEM260Q9NX78 707 aa25.65■■□□□ 1.7
PTCD3-203ENST00000409783 JAK2O60674 1132 aa25.64■■□□□ 1.7
PTCD3-203ENST00000409783 NPY5RQ15761 445 aa25.64■■□□□ 1.7
PTCD3-203ENST00000409783 PCNX4Q63HM2 1172 aa25.64■■□□□ 1.7
PTCD3-203ENST00000409783 CCSAPQ6IQ19 270 aaPredicted RBP25.64■■□□□ 1.7
PTCD3-203ENST00000409783 SEPT14Q6ZU15 432 aa25.64■■□□□ 1.7
PTCD3-203ENST00000409783 CCDC83Q8IWF9 413 aa25.64■■□□□ 1.7
PTCD3-203ENST00000409783 CCDC148Q8NFR7 591 aa25.64■■□□□ 1.7
PTCD3-203ENST00000409783 SH2B1Q9NRF2 756 aaPredicted RBP25.64■■□□□ 1.7
PTCD3-203ENST00000409783 ORC3Q9UBD5 711 aaPredicted RBP25.64■■□□□ 1.7
PTCD3-203ENST00000409783 Q9Y3F1 56 aa25.64■■□□□ 1.7
PTCD3-203ENST00000409783 ALPK3Q96L96 1907 aa25.63■■□□□ 1.69
PTCD3-203ENST00000409783 SPDYE3A6NKU9 549 aa25.63■■□□□ 1.69
PTCD3-203ENST00000409783 FOSP01100 380 aaPredicted RBP25.63■■□□□ 1.69
PTCD3-203ENST00000409783 CST5P28325 142 aaPredicted RBP25.63■■□□□ 1.69
PTCD3-203ENST00000409783 AP3B2Q13367 1082 aa25.63■■□□□ 1.69
PTCD3-203ENST00000409783 XRRA1Q6P2D8 792 aa25.63■■□□□ 1.69
PTCD3-203ENST00000409783 NECAB2Q7Z6G3 386 aa25.63■■□□□ 1.69
PTCD3-203ENST00000409783 TLK2Q86UE8 772 aa25.63■■□□□ 1.69
PTCD3-203ENST00000409783 FAM177A1Q8N128 213 aaPredicted RBP25.63■■□□□ 1.69
PTCD3-203ENST00000409783 PGBD1Q96JS3 809 aa25.63■■□□□ 1.69
PTCD3-203ENST00000409783 INPP4AQ96PE3 977 aaPredicted RBP25.63■■□□□ 1.69
PTCD3-203ENST00000409783 ANO3Q9BYT9 981 aa25.63■■□□□ 1.69
PTCD3-203ENST00000409783 TXNP10599 105 aaKnown RBP25.62■■□□□ 1.69
PTCD3-203ENST00000409783 GNA11P29992 359 aa25.62■■□□□ 1.69
PTCD3-203ENST00000409783 TTLL4Q14679 1199 aa25.62■■□□□ 1.69
PTCD3-203ENST00000409783 RNF180Q86T96 592 aa25.62■■□□□ 1.69
PTCD3-203ENST00000409783 COPS5Q92905 334 aa25.62■■□□□ 1.69
PTCD3-203ENST00000409783 DDX41Q9UJV9 622 aaKnown RBP25.62■■□□□ 1.69
PTCD3-203ENST00000409783 TNRC18O15417 2968 aaPredicted RBP25.62■■□□□ 1.69
PTCD3-203ENST00000409783 MYH7BA7E2Y1 1941 aa25.61■■□□□ 1.69
PTCD3-203ENST00000409783 NKRFO15226 690 aaKnown RBP eCLIP25.61■■□□□ 1.69
PTCD3-203ENST00000409783 DYNC1LI2O43237 492 aaPredicted RBP25.61■■□□□ 1.69
PTCD3-203ENST00000409783 STAM2O75886 525 aa25.61■■□□□ 1.69
PTCD3-203ENST00000409783 JAKMIP3Q5VZ66 844 aa25.61■■□□□ 1.69
PTCD3-203ENST00000409783 C11orf49Q9H6J7 331 aa25.61■■□□□ 1.69
PTCD3-203ENST00000409783 GJB4Q9NTQ9 266 aa25.61■■□□□ 1.69
PTCD3-203ENST00000409783 C6orf222P0C671 652 aaPredicted RBP25.6■■□□□ 1.69
PTCD3-203ENST00000409783 NLRP5P59047 1200 aa25.6■■□□□ 1.69
PTCD3-203ENST00000409783 MLLT1Q03111 559 aaPredicted RBP25.6■■□□□ 1.69
PTCD3-203ENST00000409783 SEMA3FQ13275 785 aa25.6■■□□□ 1.69
PTCD3-203ENST00000409783 LY6KQ17RY6 165 aa25.6■■□□□ 1.69
PTCD3-203ENST00000409783 REXO1Q8N1G1 1221 aaKnown RBP25.6■■□□□ 1.69
PTCD3-203ENST00000409783 DAGLBQ8NCG7 672 aa25.6■■□□□ 1.69
PTCD3-203ENST00000409783 RASGRP4Q8TDF6 673 aa25.6■■□□□ 1.69
PTCD3-203ENST00000409783 CRYGNQ8WXF5 182 aa25.6■■□□□ 1.69
PTCD3-203ENST00000409783 LLPHQ9BRT6 129 aaKnown RBP25.6■■□□□ 1.69
PTCD3-203ENST00000409783 RTEL1Q9NZ71 1219 aa25.6■■□□□ 1.69
PTCD3-203ENST00000409783 PHF24Q9UPV7 400 aa25.6■■□□□ 1.69
PTCD3-203ENST00000409783 KBTBD13C9JR72 458 aa25.59■■□□□ 1.69
PTCD3-203ENST00000409783 M0R2N6 131 aa25.59■■□□□ 1.69
PTCD3-203ENST00000409783 MYCNP04198 464 aaPredicted RBP25.59■■□□□ 1.69
PTCD3-203ENST00000409783 ICAM3P32942 547 aa25.59■■□□□ 1.69
PTCD3-203ENST00000409783 SREBF1P36956 1147 aa25.59■■□□□ 1.69
PTCD3-203ENST00000409783 BICD2Q8TD16 824 aa25.59■■□□□ 1.69
PTCD3-203ENST00000409783 TMX3Q96JJ7 454 aa25.59■■□□□ 1.69
PTCD3-203ENST00000409783 TSEN34Q9BSV6 310 aaKnown RBP25.59■■□□□ 1.69
PTCD3-203ENST00000409783 ALG1Q9BT22 464 aa25.59■■□□□ 1.69
PTCD3-203ENST00000409783 PHF20Q9BVI0 1012 aa25.59■■□□□ 1.69
PTCD3-203ENST00000409783 PCDHA4Q9UN74 947 aa25.59■■□□□ 1.69
PTCD3-203ENST00000409783 KCNJ14Q9UNX9 436 aa25.59■■□□□ 1.69
PTCD3-203ENST00000409783 UBIAD1Q9Y5Z9 338 aa25.59■■□□□ 1.69
PTCD3-203ENST00000409783 BEX3Q00994 111 aa25.58■■□□□ 1.69
PTCD3-203ENST00000409783 SP2Q02086 613 aa25.58■■□□□ 1.69
PTCD3-203ENST00000409783 ARHGAP1Q07960 439 aa25.58■■□□□ 1.69
PTCD3-203ENST00000409783 KCNA10Q16322 511 aa25.58■■□□□ 1.69
PTCD3-203ENST00000409783 MCTP2Q6DN12 878 aa25.58■■□□□ 1.69
PTCD3-203ENST00000409783 WASF1Q92558 559 aa25.58■■□□□ 1.69
PTCD3-203ENST00000409783 AP5M1Q9H0R1 490 aa25.58■■□□□ 1.69
PTCD3-203ENST00000409783 EHMT1Q9H9B1 1298 aa25.58■■□□□ 1.69
PTCD3-203ENST00000409783 SPC25Q9HBM1 224 aa25.58■■□□□ 1.69
PTCD3-203ENST00000409783 MRVI1Q9Y6F6 885 aa25.58■■□□□ 1.69
PTCD3-203ENST00000409783 DOCK5Q9H7D0 1870 aa25.57■■□□□ 1.68
PTCD3-203ENST00000409783 SPATA31C2B4DYI2 1134 aa25.57■■□□□ 1.68
PTCD3-203ENST00000409783 TGFB3P10600 412 aa25.57■■□□□ 1.68
PTCD3-203ENST00000409783 ITGB5P18084 799 aa25.57■■□□□ 1.68
PTCD3-203ENST00000409783 MCM2P49736 904 aa25.57■■□□□ 1.68
PTCD3-203ENST00000409783 FSCN1Q16658 493 aaKnown RBP25.57■■□□□ 1.68
PTCD3-203ENST00000409783 GNASQ5JWF2 1037 aa25.57■■□□□ 1.68
PTCD3-203ENST00000409783 GALNT17Q6IS24 598 aa25.57■■□□□ 1.68
PTCD3-203ENST00000409783 KCNV1Q6PIU1 500 aa25.57■■□□□ 1.68
PTCD3-203ENST00000409783 SENP6Q9GZR1 1112 aaPredicted RBP25.57■■□□□ 1.68
PTCD3-203ENST00000409783 EDIL3O43854 480 aa25.56■■□□□ 1.68
PTCD3-203ENST00000409783 ACLYP53396 1101 aa25.56■■□□□ 1.68
PTCD3-203ENST00000409783 BLIDQ8IZY5 108 aa25.56■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms