RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 PCDHA1Q9Y5I3 950 aa23.22■■□□□ 1.31
CCDC88B-203ENST00000359902 ECE2O60344 883 aa23.21■■□□□ 1.31
CCDC88B-203ENST00000359902 IDEP14735 1019 aa23.21■■□□□ 1.31
CCDC88B-203ENST00000359902 TATDN1Q6P1N9 297 aa23.21■■□□□ 1.31
CCDC88B-203ENST00000359902 TMCO3Q6UWJ1 677 aa23.21■■□□□ 1.31
CCDC88B-203ENST00000359902 GLT8D2Q9H1C3 349 aa23.21■■□□□ 1.31
CCDC88B-203ENST00000359902 MARCH6O60337 910 aa23.21■■□□□ 1.31
CCDC88B-203ENST00000359902 NAPGQ99747 312 aaPredicted RBP23.21■■□□□ 1.31
CCDC88B-203ENST00000359902 SCN9AQ15858 1988 aa23.2■■□□□ 1.3
CCDC88B-203ENST00000359902 ZBED6P86452 979 aa23.2■■□□□ 1.3
CCDC88B-203ENST00000359902 PSMD2Q13200 908 aa23.2■■□□□ 1.3
CCDC88B-203ENST00000359902 SEPT2Q15019 361 aa23.2■■□□□ 1.3
CCDC88B-203ENST00000359902 NAP1L4Q99733 375 aaKnown RBP23.2■■□□□ 1.3
CCDC88B-203ENST00000359902 NPM3O75607 178 aaKnown RBP23.2■■□□□ 1.3
CCDC88B-203ENST00000359902 CHMP4BP1P59074 171 aa23.2■■□□□ 1.3
CCDC88B-203ENST00000359902 HERVK_113P62684 666 aa23.2■■□□□ 1.3
CCDC88B-203ENST00000359902 CDC37Q16543 378 aaPredicted RBP23.2■■□□□ 1.3
CCDC88B-203ENST00000359902 FIGNQ5HY92 759 aa23.2■■□□□ 1.3
CCDC88B-203ENST00000359902 HYIQ5T013 277 aa23.2■■□□□ 1.3
CCDC88B-203ENST00000359902 DNAJC19Q96DA6 116 aa23.2■■□□□ 1.3
CCDC88B-203ENST00000359902 TRIM10Q9UDY6 481 aa23.2■■□□□ 1.3
CCDC88B-203ENST00000359902 PNMA6AP0CW24 399 aaPredicted RBP23.19■■□□□ 1.3
CCDC88B-203ENST00000359902 HOXA7P31268 230 aaPredicted RBP23.19■■□□□ 1.3
CCDC88B-203ENST00000359902 FKBP15Q5T1M5 1219 aa23.19■■□□□ 1.3
CCDC88B-203ENST00000359902 STYK1Q6J9G0 422 aa23.19■■□□□ 1.3
CCDC88B-203ENST00000359902 CEP112Q8N8E3 955 aa23.19■■□□□ 1.3
CCDC88B-203ENST00000359902 PCMTD1Q96MG8 357 aaPredicted RBP23.19■■□□□ 1.3
CCDC88B-203ENST00000359902 PARD6BQ9BYG5 372 aa23.19■■□□□ 1.3
CCDC88B-203ENST00000359902 ZSWIM4Q9H7M6 989 aa23.19■■□□□ 1.3
CCDC88B-203ENST00000359902 A0A1W2PQJ5 194 aa23.19■■□□□ 1.3
CCDC88B-203ENST00000359902 H0YIN7 160 aa23.19■■□□□ 1.3
CCDC88B-203ENST00000359902 USP11P51784 963 aa23.19■■□□□ 1.3
CCDC88B-203ENST00000359902 LRRC63Q05C16 580 aa23.19■■□□□ 1.3
CCDC88B-203ENST00000359902 VWA3BQ502W6 1294 aa23.19■■□□□ 1.3
CCDC88B-203ENST00000359902 GLIS3Q8NEA6 775 aa23.19■■□□□ 1.3
CCDC88B-203ENST00000359902 HAUS4Q9H6D7 363 aa23.19■■□□□ 1.3
CCDC88B-203ENST00000359902 PUF60Q9UHX1 559 aaKnown RBP23.19■■□□□ 1.3
CCDC88B-203ENST00000359902 SERPINA10Q9UK55 444 aa23.19■■□□□ 1.3
CCDC88B-203ENST00000359902 DMTNQ08495 405 aa23.18■■□□□ 1.3
CCDC88B-203ENST00000359902 TRIM34Q9BYJ4 488 aa23.18■■□□□ 1.3
CCDC88B-203ENST00000359902 ANO3Q9BYT9 981 aa23.18■■□□□ 1.3
CCDC88B-203ENST00000359902 ZNHIT6Q9NWK9 470 aaKnown RBP23.18■■□□□ 1.3
CCDC88B-203ENST00000359902 ZNF219Q9P2Y4 722 aaPredicted RBP23.18■■□□□ 1.3
CCDC88B-203ENST00000359902 PRDM4Q9UKN5 801 aa23.18■■□□□ 1.3
CCDC88B-203ENST00000359902 GUCA1BQ9UMX6 200 aa23.18■■□□□ 1.3
CCDC88B-203ENST00000359902 CYP3A7-CYP3A51PA0A087WV96 503 aa23.17■■□□□ 1.3
CCDC88B-203ENST00000359902 CYP3A7P24462 503 aa23.17■■□□□ 1.3
CCDC88B-203ENST00000359902 ICA1Q05084 483 aa23.17■■□□□ 1.3
CCDC88B-203ENST00000359902 LRRC41Q15345 812 aa23.17■■□□□ 1.3
CCDC88B-203ENST00000359902 TMEM179Q6ZVK1 233 aa23.17■■□□□ 1.3
CCDC88B-203ENST00000359902 UIMC1Q96RL1 719 aa23.17■■□□□ 1.3
CCDC88B-203ENST00000359902 NDST4Q9H3R1 872 aa23.17■■□□□ 1.3
CCDC88B-203ENST00000359902 KCNMB3Q9NPA1 279 aa23.17■■□□□ 1.3
CCDC88B-203ENST00000359902 ARFGEF1Q9Y6D6 1849 aa23.17■■□□□ 1.3
CCDC88B-203ENST00000359902 F5H6K3 240 aa23.17■■□□□ 1.3
CCDC88B-203ENST00000359902 MEIS2O14770 477 aa23.17■■□□□ 1.3
CCDC88B-203ENST00000359902 FGFR1OPO95684 399 aaKnown RBP23.17■■□□□ 1.3
CCDC88B-203ENST00000359902 KLRC3Q07444 240 aa23.17■■□□□ 1.3
CCDC88B-203ENST00000359902 MBOAT7Q96N66 472 aa23.17■■□□□ 1.3
CCDC88B-203ENST00000359902 NT5C3AQ9H0P0 336 aa23.17■■□□□ 1.3
CCDC88B-203ENST00000359902 NHEJ1Q9H9Q4 299 aaPredicted RBP23.17■■□□□ 1.3
CCDC88B-203ENST00000359902 SEC31AO94979 1220 aaKnown RBP23.16■■□□□ 1.3
CCDC88B-203ENST00000359902 KRT83P78385 493 aa23.16■■□□□ 1.3
CCDC88B-203ENST00000359902 ZNF662Q6ZS27 426 aa23.16■■□□□ 1.3
CCDC88B-203ENST00000359902 LRRC55Q6ZSA7 311 aa23.16■■□□□ 1.3
CCDC88B-203ENST00000359902 SLX4Q8IY92 1834 aa23.16■■□□□ 1.3
CCDC88B-203ENST00000359902 ABCB11O95342 1321 aa23.16■■□□□ 1.3
CCDC88B-203ENST00000359902 KDM3AQ9Y4C1 1321 aa23.16■■□□□ 1.3
CCDC88B-203ENST00000359902 CDK17Q00537 523 aa23.16■■□□□ 1.3
CCDC88B-203ENST00000359902 AMPD2Q01433 879 aa23.16■■□□□ 1.3
CCDC88B-203ENST00000359902 COASYQ13057 564 aa23.16■■□□□ 1.3
CCDC88B-203ENST00000359902 MAN2A1Q16706 1144 aa23.16■■□□□ 1.3
CCDC88B-203ENST00000359902 FOXR2Q6PJQ5 311 aa23.16■■□□□ 1.3
CCDC88B-203ENST00000359902 CCDC170Q8IYT3 715 aa23.16■■□□□ 1.3
CCDC88B-203ENST00000359902 TFR2Q9UP52 801 aa23.16■■□□□ 1.3
CCDC88B-203ENST00000359902 SIK3Q9Y2K2 1263 aa23.16■■□□□ 1.3
CCDC88B-203ENST00000359902 ZNF646O15015 1829 aaPredicted RBP23.16■■□□□ 1.3
CCDC88B-203ENST00000359902 GDF11O95390 407 aa23.15■■□□□ 1.3
CCDC88B-203ENST00000359902 TFRCP02786 760 aaKnown RBP23.15■■□□□ 1.3
CCDC88B-203ENST00000359902 CYLC1P35663 651 aaPredicted RBP23.15■■□□□ 1.3
CCDC88B-203ENST00000359902 ABCB5Q2M3G0 1257 aa23.15■■□□□ 1.3
CCDC88B-203ENST00000359902 CC2D1AQ6P1N0 951 aaPredicted RBP23.15■■□□□ 1.3
CCDC88B-203ENST00000359902 CRYGNQ8WXF5 182 aa23.15■■□□□ 1.3
CCDC88B-203ENST00000359902 IQCDQ96DY2 449 aa23.15■■□□□ 1.3
CCDC88B-203ENST00000359902 P2RX7Q99572 595 aaKnown RBP23.15■■□□□ 1.3
CCDC88B-203ENST00000359902 PANK4Q9NVE7 773 aa23.15■■□□□ 1.3
CCDC88B-203ENST00000359902 KIAA1024Q9UPX6 916 aa23.15■■□□□ 1.3
CCDC88B-203ENST00000359902 E9PMD0 336 aa23.15■■□□□ 1.3
CCDC88B-203ENST00000359902 SNAP25P60880 206 aa23.15■■□□□ 1.3
CCDC88B-203ENST00000359902 GABPB1Q06547 395 aaPredicted RBP23.15■■□□□ 1.3
CCDC88B-203ENST00000359902 UTP14CQ5TAP6 766 aaKnown RBP23.15■■□□□ 1.3
CCDC88B-203ENST00000359902 MYOCDQ8IZQ8 938 aa23.15■■□□□ 1.3
CCDC88B-203ENST00000359902 GMCL1P1Q8NEA9 526 aa23.15■■□□□ 1.3
CCDC88B-203ENST00000359902 TDRD3Q9H7E2 651 aaKnown RBP23.15■■□□□ 1.3
CCDC88B-203ENST00000359902 EIF3CLB5ME19 914 aaKnown RBP23.14■■□□□ 1.3
CCDC88B-203ENST00000359902 PSMD14O00487 310 aa23.14■■□□□ 1.3
CCDC88B-203ENST00000359902 CHRNA5P30532 468 aa23.14■■□□□ 1.3
CCDC88B-203ENST00000359902 JAG1P78504 1218 aa23.14■■□□□ 1.3
CCDC88B-203ENST00000359902 AP3B2Q13367 1082 aa23.14■■□□□ 1.3
CCDC88B-203ENST00000359902 AOC3Q16853 763 aa23.14■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 304 ms