RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 KCNQ5Q9NR82 932 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 CWC25Q9NXE8 425 aaPredicted RBP2.78□□□□□ -1.96
VPS54-202ENST00000354504 PGAP2Q9UHJ9 254 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 EFR3BQ9Y2G0 817 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 GTF3C5Q9Y5Q8 519 aaPredicted RBP2.78□□□□□ -1.96
VPS54-202ENST00000354504 RBM8AQ9Y5S9 174 aaKnown RBP2.78□□□□□ -1.96
VPS54-202ENST00000354504 MRPL42Q9Y6G3 142 aaKnown RBP2.78□□□□□ -1.96
VPS54-202ENST00000354504 MORC2Q9Y6X9 1032 aaPredicted RBP2.78□□□□□ -1.96
VPS54-202ENST00000354504 FRMPD3Q5JV73 1810 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 ATRNL1Q5VV63 1379 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 A0A087WZG4 1122 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 TMEM238LA0A1B0GVL6 79 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 CCDC85CA6NKD9 419 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 GRIN3BO60391 1043 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 CANXP27824 592 aaKnown RBP2.77□□□□□ -1.97
VPS54-202ENST00000354504 BMS1Q14692 1282 aaKnown RBP2.77□□□□□ -1.97
VPS54-202ENST00000354504 SEC23AQ15436 765 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 KLHL40Q2TBA0 621 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 TOM1L2Q6ZVM7 507 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 GOLM1Q8NBJ4 401 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 NUDT8Q8WV74 236 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 HNRNPLLQ8WVV9 542 aaKnown RBP2.77□□□□□ -1.97
VPS54-202ENST00000354504 MED15Q96RN5 788 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 MAP3K14Q99558 947 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 LPIN3Q9BQK8 851 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 ZNF576Q9H609 170 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 ANAPC4Q9UJX5 808 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 PNPLA7Q6ZV29 1317 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 COL2A1P02458 1487 aaPredicted RBP2.77□□□□□ -1.97
VPS54-202ENST00000354504 KIF28PB7ZC32 967 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 PDE8BO95263 885 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 NEFMP07197 916 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 XRCC5P13010 732 aaKnown RBP2.77□□□□□ -1.97
VPS54-202ENST00000354504 EPB42P16452 691 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 SYT1P21579 422 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 BMP6P22004 513 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 NASPP49321 788 aaPredicted RBP2.77□□□□□ -1.97
VPS54-202ENST00000354504 ALX1Q15699 326 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 TTLL5Q6EMB2 1281 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 C20orf204Q6ZNR8 217 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 Q6ZS46 218 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 NSUN7Q8NE18 718 aaKnown RBP2.77□□□□□ -1.97
VPS54-202ENST00000354504 GTF3C6Q969F1 213 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 SSBP4Q9BWG4 385 aaPredicted RBP2.77□□□□□ -1.97
VPS54-202ENST00000354504 MARK1Q9P0L2 795 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 HMG20BQ9P0W2 317 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 DDX52Q9Y2R4 599 aaKnown RBP eCLIP2.77□□□□□ -1.97
VPS54-202ENST00000354504 STARD13Q9Y3M8 1113 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 CORINQ9Y5Q5 1042 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 GJA3Q9Y6H8 435 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 DNAH14Q0VDD8 3507 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 PLIN4Q96Q06 1357 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 KRBA1A5PL33 1030 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 GSG1L2A8MUP6 293 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 B2RBV5 119 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 PFKFB2O60825 505 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 GBP2P32456 591 aaPredicted RBP2.77□□□□□ -1.97
VPS54-202ENST00000354504 EIF4A3P38919 411 aaKnown RBP2.77□□□□□ -1.97
VPS54-202ENST00000354504 PHKA1P46020 1223 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 DDR1Q08345 913 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 AIMP1Q12904 312 aaKnown RBP2.77□□□□□ -1.97
VPS54-202ENST00000354504 RASGRF1Q13972 1273 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 ZNF827Q17R98 1081 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 NKAPLQ5M9Q1 402 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 XP32Q5T750 250 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 CWC27Q6UX04 472 aaKnown RBP2.77□□□□□ -1.97
VPS54-202ENST00000354504 CDC37L1Q7L3B6 337 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 AACSQ86V21 672 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 NECAB3Q96P71 396 aaPredicted RBP2.77□□□□□ -1.97
VPS54-202ENST00000354504 NRSN2Q9GZP1 204 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 RBSNQ9H1K0 784 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 SLKQ9H2G2 1235 aaPredicted RBP2.77□□□□□ -1.97
VPS54-202ENST00000354504 GOLPH3LQ9H4A5 285 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 INCENPQ9NQS7 918 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 HELLSQ9NRZ9 838 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 DNAJB12Q9NXW2 375 aaKnown RBP2.77□□□□□ -1.97
VPS54-202ENST00000354504 MROH7-TTC4A0A0A0MT08 1334 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 ELP1O95163 1332 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 CNTNAP5Q8WYK1 1306 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 WDFY3Q8IZQ1 3526 aa2.77□□□□□ -1.97
VPS54-202ENST00000354504 A0A096LPE4 126 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 A0A1W2PPZ6 126 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 FAM221AA4D161 298 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 E7EWF7 191 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 FANCGO15287 622 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 DDX3YO15523 660 aaKnown RBP2.76□□□□□ -1.97
VPS54-202ENST00000354504 GREM1O60565 184 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 IL15P40933 162 aaPredicted RBP2.76□□□□□ -1.97
VPS54-202ENST00000354504 ADGRE1Q14246 886 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 PTPAQ15257 358 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 ZYXQ15942 572 aaKnown RBP2.76□□□□□ -1.97
VPS54-202ENST00000354504 CLEC4GQ6UXB4 293 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 UBE3DQ7Z6J8 389 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 PDZD3Q86UT5 571 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 TRPM4Q8TD43 1214 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 STRBPQ96SI9 672 aaKnown RBP2.76□□□□□ -1.97
VPS54-202ENST00000354504 SPON2Q9BUD6 331 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 PPM1HQ9ULR3 514 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 FAM86C2PA6NEL3 165 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 HMMRO75330 724 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms