RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ZC3H7AQ8IWR0 971 aaKnown RBP4.82□□□□□ -1.64
HMGB1-201ENST00000326004 DHX37Q8IY37 1157 aaKnown RBP4.82□□□□□ -1.64
HMGB1-201ENST00000326004 NETO2Q8NC67 525 aa4.82□□□□□ -1.64
HMGB1-201ENST00000326004 RNF32Q9H0A6 362 aa4.82□□□□□ -1.64
HMGB1-201ENST00000326004 SLC6A17Q9H1V8 727 aa4.82□□□□□ -1.64
HMGB1-201ENST00000326004 CDIP1Q9H305 208 aa4.82□□□□□ -1.64
HMGB1-201ENST00000326004 EPB41L1Q9H4G0 881 aa4.82□□□□□ -1.64
HMGB1-201ENST00000326004 TNFRSF12AQ9NP84 129 aa4.82□□□□□ -1.64
HMGB1-201ENST00000326004 DGKIO75912 1065 aa4.81□□□□□ -1.64
HMGB1-201ENST00000326004 GLI1P08151 1106 aa4.81□□□□□ -1.64
HMGB1-201ENST00000326004 GLI4P10075 376 aa4.81□□□□□ -1.64
HMGB1-201ENST00000326004 ITGB5P18084 799 aa4.81□□□□□ -1.64
HMGB1-201ENST00000326004 NCLP19338 710 aaKnown RBP4.81□□□□□ -1.64
HMGB1-201ENST00000326004 POU3F2P20265 443 aaPredicted RBP4.81□□□□□ -1.64
HMGB1-201ENST00000326004 FPR2P25090 351 aa4.81□□□□□ -1.64
HMGB1-201ENST00000326004 TACR1P25103 407 aa4.81□□□□□ -1.64
HMGB1-201ENST00000326004 ERVFRD-1P60508 538 aa4.81□□□□□ -1.64
HMGB1-201ENST00000326004 TMEM62Q0P6H9 643 aa4.81□□□□□ -1.64
HMGB1-201ENST00000326004 KIR3DS1Q14943 382 aa4.81□□□□□ -1.64
HMGB1-201ENST00000326004 NR1I3Q14994 352 aa4.81□□□□□ -1.64
HMGB1-201ENST00000326004 CHRNA2Q15822 529 aa4.81□□□□□ -1.64
HMGB1-201ENST00000326004 KCNMB1Q16558 191 aa4.81□□□□□ -1.64
HMGB1-201ENST00000326004 FYB2Q5VWT5 728 aa4.81□□□□□ -1.64
HMGB1-201ENST00000326004 BICRALQ6AI39 1079 aa4.81□□□□□ -1.64
HMGB1-201ENST00000326004 WWC2Q6AWC2 1192 aa4.81□□□□□ -1.64
HMGB1-201ENST00000326004 ZNF662Q6ZS27 426 aa4.81□□□□□ -1.64
HMGB1-201ENST00000326004 C16orf59Q7L2K0 433 aa4.81□□□□□ -1.64
HMGB1-201ENST00000326004 DDX53Q86TM3 631 aaKnown RBP4.81□□□□□ -1.64
HMGB1-201ENST00000326004 LRRTM3Q86VH5 581 aa4.81□□□□□ -1.64
HMGB1-201ENST00000326004 ZSWIM9Q86XI8 627 aa4.81□□□□□ -1.64
HMGB1-201ENST00000326004 DCP2Q8IU60 420 aaKnown RBP4.81□□□□□ -1.64
HMGB1-201ENST00000326004 IRF2BP1Q8IU81 584 aa4.81□□□□□ -1.64
HMGB1-201ENST00000326004 AHI1Q8N157 1196 aa4.81□□□□□ -1.64
HMGB1-201ENST00000326004 PPM1KQ8N3J5 372 aa4.81□□□□□ -1.64
HMGB1-201ENST00000326004 PCDH19Q8TAB3 1148 aa4.81□□□□□ -1.64
HMGB1-201ENST00000326004 FBXW5Q969U6 566 aa4.81□□□□□ -1.64
HMGB1-201ENST00000326004 INTS4Q96HW7 963 aaKnown RBP4.81□□□□□ -1.64
HMGB1-201ENST00000326004 CELF4Q9BZC1 486 aaKnown RBP4.81□□□□□ -1.64
HMGB1-201ENST00000326004 IPPKQ9H8X2 491 aa4.81□□□□□ -1.64
HMGB1-201ENST00000326004 SPC25Q9HBM1 224 aa4.81□□□□□ -1.64
HMGB1-201ENST00000326004 PPARGC1AQ9UBK2 798 aaKnown RBP4.81□□□□□ -1.64
HMGB1-201ENST00000326004 NUDT5Q9UKK9 219 aa4.81□□□□□ -1.64
HMGB1-201ENST00000326004 TNPO3Q9Y5L0 923 aaKnown RBP4.81□□□□□ -1.64
HMGB1-201ENST00000326004 A0A087X0B3 334 aa4.8□□□□□ -1.64
HMGB1-201ENST00000326004 ANKRD62A6NC57 917 aa4.8□□□□□ -1.64
HMGB1-201ENST00000326004 MAFKO60675 156 aa4.8□□□□□ -1.64
HMGB1-201ENST00000326004 DNAJC6O75061 913 aa4.8□□□□□ -1.64
HMGB1-201ENST00000326004 PAPLNO95428 1278 aa4.8□□□□□ -1.64
HMGB1-201ENST00000326004 CYBBP04839 570 aa4.8□□□□□ -1.64
HMGB1-201ENST00000326004 MPOP05164 745 aa4.8□□□□□ -1.64
HMGB1-201ENST00000326004 DBHP09172 617 aa4.8□□□□□ -1.64
HMGB1-201ENST00000326004 MYCLP1P12525 358 aaPredicted RBP4.8□□□□□ -1.64
HMGB1-201ENST00000326004 SLC6A11P48066 632 aa4.8□□□□□ -1.64
HMGB1-201ENST00000326004 MASP1P48740 699 aa4.8□□□□□ -1.64
HMGB1-201ENST00000326004 IRAK1P51617 712 aa4.8□□□□□ -1.64
HMGB1-201ENST00000326004 ST5P78524 1137 aa4.8□□□□□ -1.64
HMGB1-201ENST00000326004 SPIRE1Q08AE8 756 aa4.8□□□□□ -1.64
HMGB1-201ENST00000326004 ZCCHC8Q6NZY4 707 aaKnown RBP4.8□□□□□ -1.64
HMGB1-201ENST00000326004 CNNM4Q6P4Q7 775 aa4.8□□□□□ -1.64
HMGB1-201ENST00000326004 UBE2R2Q712K3 238 aaPredicted RBP4.8□□□□□ -1.64
HMGB1-201ENST00000326004 ANKLE2Q86XL3 938 aa4.8□□□□□ -1.64
HMGB1-201ENST00000326004 SIRT2Q8IXJ6 389 aa4.8□□□□□ -1.64
HMGB1-201ENST00000326004 DDX1Q92499 740 aaKnown RBP4.8□□□□□ -1.64
HMGB1-201ENST00000326004 MAPRE3Q9UPY8 281 aa4.8□□□□□ -1.64
HMGB1-201ENST00000326004 NUB1Q9Y5A7 615 aa4.8□□□□□ -1.64
HMGB1-201ENST00000326004 OR14I1A6ND48 311 aa4.79□□□□□ -1.64
HMGB1-201ENST00000326004 GSG1L2A8MUP6 293 aa4.79□□□□□ -1.64
HMGB1-201ENST00000326004 KRIT1O00522 736 aa4.79□□□□□ -1.64
HMGB1-201ENST00000326004 ABLIM1O14639 778 aa4.79□□□□□ -1.64
HMGB1-201ENST00000326004 PDE8AO60658 829 aa4.79□□□□□ -1.64
HMGB1-201ENST00000326004 NTRK1P04629 796 aa4.79□□□□□ -1.64
HMGB1-201ENST00000326004 CKMP06732 381 aa4.79□□□□□ -1.64
HMGB1-201ENST00000326004 VIL1P09327 827 aaKnown RBP4.79□□□□□ -1.64
HMGB1-201ENST00000326004 SRGAP2CP0DJJ0 459 aa4.79□□□□□ -1.64
HMGB1-201ENST00000326004 GNAT1P11488 350 aa4.79□□□□□ -1.64
HMGB1-201ENST00000326004 KCNA6P17658 529 aa4.79□□□□□ -1.64
HMGB1-201ENST00000326004 ZNF460Q14592 562 aa4.79□□□□□ -1.64
HMGB1-201ENST00000326004 ADGRF1Q5T601 910 aa4.79□□□□□ -1.64
HMGB1-201ENST00000326004 OLFML2BQ68BL8 750 aa4.79□□□□□ -1.64
HMGB1-201ENST00000326004 CYP4F22Q6NT55 531 aa4.79□□□□□ -1.64
HMGB1-201ENST00000326004 PAQR3Q6TCH7 311 aa4.79□□□□□ -1.64
HMGB1-201ENST00000326004 OTOP3Q7RTS5 596 aa4.79□□□□□ -1.64
HMGB1-201ENST00000326004 KRT26Q7Z3Y9 468 aa4.79□□□□□ -1.64
HMGB1-201ENST00000326004 FILIP1Q7Z7B0 1213 aa4.79□□□□□ -1.64
HMGB1-201ENST00000326004 THNSL2Q86YJ6 484 aa4.79□□□□□ -1.64
HMGB1-201ENST00000326004 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.79□□□□□ -1.64
HMGB1-201ENST00000326004 SEC14L1Q92503 715 aa4.79□□□□□ -1.64
HMGB1-201ENST00000326004 ORAI3Q9BRQ5 295 aa4.79□□□□□ -1.64
HMGB1-201ENST00000326004 TARS2Q9BW92 718 aaKnown RBP4.79□□□□□ -1.64
HMGB1-201ENST00000326004 JAM3Q9BX67 310 aa4.79□□□□□ -1.64
HMGB1-201ENST00000326004 AP5M1Q9H0R1 490 aa4.79□□□□□ -1.64
HMGB1-201ENST00000326004 SLC6A20Q9NP91 592 aa4.79□□□□□ -1.64
HMGB1-201ENST00000326004 SAMD15Q9P1V8 674 aa4.79□□□□□ -1.64
HMGB1-201ENST00000326004 FBLN5Q9UBX5 448 aa4.79□□□□□ -1.64
HMGB1-201ENST00000326004 CCDC66A2RUB6 948 aa4.78□□□□□ -1.64
HMGB1-201ENST00000326004 HRKO00198 91 aa4.78□□□□□ -1.64
HMGB1-201ENST00000326004 ZBTB7AO95365 584 aa4.78□□□□□ -1.64
HMGB1-201ENST00000326004 JMJD7P0C870 316 aa4.78□□□□□ -1.64
HMGB1-201ENST00000326004 PYGMP11217 842 aa4.78□□□□□ -1.64
HMGB1-201ENST00000326004 SOX5P35711 763 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms