RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 TCF3P15923 654 aa6.98□□□□□ -1.29
CD44-239ENST00000639002 POMZP3Q6PJE2 187 aa6.98□□□□□ -1.29
CD44-239ENST00000639002 ADGRG2Q8IZP9 1017 aa6.98□□□□□ -1.29
CD44-239ENST00000639002 BTN2A2Q8WVV5 523 aa6.98□□□□□ -1.29
CD44-239ENST00000639002 ALG3Q92685 438 aa6.98□□□□□ -1.29
CD44-239ENST00000639002 RELTQ969Z4 430 aa6.98□□□□□ -1.29
CD44-239ENST00000639002 TINF2Q9BSI4 451 aa6.98□□□□□ -1.29
CD44-239ENST00000639002 PRKAG3Q9UGI9 489 aa6.98□□□□□ -1.29
CD44-239ENST00000639002 A0A1B0GTL3 188 aa6.97□□□□□ -1.29
CD44-239ENST00000639002 NOP56O00567 594 aaKnown RBP6.97□□□□□ -1.29
CD44-239ENST00000639002 NTRK1P04629 796 aa6.97□□□□□ -1.29
CD44-239ENST00000639002 CAPNS1P04632 268 aa6.97□□□□□ -1.29
CD44-239ENST00000639002 SSBP05455 408 aaKnown RBP eCLIP6.97□□□□□ -1.29
CD44-239ENST00000639002 ITGAVP06756 1048 aa6.97□□□□□ -1.29
CD44-239ENST00000639002 FGRP09769 529 aa6.97□□□□□ -1.29
CD44-239ENST00000639002 BUD31P41223 144 aaPredicted RBP6.97□□□□□ -1.29
CD44-239ENST00000639002 SF1Q15637 639 aaKnown RBP6.97□□□□□ -1.29
CD44-239ENST00000639002 LARP1BQ659C4 914 aaKnown RBP6.97□□□□□ -1.29
CD44-239ENST00000639002 WWC2Q6AWC2 1192 aa6.97□□□□□ -1.29
CD44-239ENST00000639002 CCDC103Q8IW40 242 aa6.97□□□□□ -1.29
CD44-239ENST00000639002 KREMEN2Q8NCW0 462 aa6.97□□□□□ -1.29
CD44-239ENST00000639002 LUC7LQ9NQ29 371 aaKnown RBP6.97□□□□□ -1.29
CD44-239ENST00000639002 RTEL1Q9NZ71 1219 aa6.97□□□□□ -1.29
CD44-239ENST00000639002 SASH1O94885 1247 aa6.96□□□□□ -1.3
CD44-239ENST00000639002 NAT2P11245 290 aa6.96□□□□□ -1.3
CD44-239ENST00000639002 B3GNT8Q7Z7M8 397 aa6.96□□□□□ -1.3
CD44-239ENST00000639002 SAPCD2Q86UD0 394 aa6.96□□□□□ -1.3
CD44-239ENST00000639002 VPS37DQ86XT2 251 aa6.96□□□□□ -1.3
CD44-239ENST00000639002 ZDHHC14Q8IZN3 488 aa6.96□□□□□ -1.3
CD44-239ENST00000639002 CRACR2BQ8N4Y2 399 aaPredicted RBP6.96□□□□□ -1.3
CD44-239ENST00000639002 ZNF526Q8TF50 670 aaPredicted RBP6.96□□□□□ -1.3
CD44-239ENST00000639002 PPP1R14AQ96A00 147 aa6.96□□□□□ -1.3
CD44-239ENST00000639002 PEX11GQ96HA9 241 aa6.96□□□□□ -1.3
CD44-239ENST00000639002 NOX5Q96PH1 765 aa6.96□□□□□ -1.3
CD44-239ENST00000639002 SUSD5O60279 629 aa6.95□□□□□ -1.3
CD44-239ENST00000639002 FOXD2O60548 495 aaPredicted RBP6.95□□□□□ -1.3
CD44-239ENST00000639002 SLURP1P55000 103 aa6.95□□□□□ -1.3
CD44-239ENST00000639002 SLC9A5Q14940 896 aa6.95□□□□□ -1.3
CD44-239ENST00000639002 TNNI3KQ59H18 835 aa6.95□□□□□ -1.3
CD44-239ENST00000639002 DENND5AQ6IQ26 1287 aa6.95□□□□□ -1.3
CD44-239ENST00000639002 CABP7Q86V35 215 aa6.95□□□□□ -1.3
CD44-239ENST00000639002 ZNF227Q86WZ6 799 aa6.95□□□□□ -1.3
CD44-239ENST00000639002 MCF2L2Q86YR7 1114 aa6.95□□□□□ -1.3
CD44-239ENST00000639002 TEX2Q8IWB9 1127 aa6.95□□□□□ -1.3
CD44-239ENST00000639002 NLGN1Q8N2Q7 840 aa6.95□□□□□ -1.3
CD44-239ENST00000639002 USP33Q8TEY7 942 aa6.95□□□□□ -1.3
CD44-239ENST00000639002 KRTAP4-2Q9BYR5 136 aa6.95□□□□□ -1.3
CD44-239ENST00000639002 ZNF408Q9H9D4 720 aa6.95□□□□□ -1.3
CD44-239ENST00000639002 MARCH2Q9P0N8 246 aa6.95□□□□□ -1.3
CD44-239ENST00000639002 PMF1-BGLAPU3KQ54 211 aa6.95□□□□□ -1.3
CD44-239ENST00000639002 SGSM2O43147 1006 aa6.94□□□□□ -1.3
CD44-239ENST00000639002 SCG5P05408 212 aa6.94□□□□□ -1.3
CD44-239ENST00000639002 NFIXQ14938 502 aa6.94□□□□□ -1.3
CD44-239ENST00000639002 SV2CQ496J9 727 aa6.94□□□□□ -1.3
CD44-239ENST00000639002 SP8Q8IXZ3 490 aa6.94□□□□□ -1.3
CD44-239ENST00000639002 SMARCC2Q8TAQ2 1214 aa6.94□□□□□ -1.3
CD44-239ENST00000639002 CPA5Q8WXQ8 436 aa6.94□□□□□ -1.3
CD44-239ENST00000639002 SYT3Q9BQG1 590 aa6.94□□□□□ -1.3
CD44-239ENST00000639002 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.94□□□□□ -1.3
CD44-239ENST00000639002 KRTAP9-3Q9BYQ3 159 aa6.94□□□□□ -1.3
CD44-239ENST00000639002 SH3D21A4FU49 640 aa6.93□□□□□ -1.3
CD44-239ENST00000639002 DDAH1O94760 285 aa6.93□□□□□ -1.3
CD44-239ENST00000639002 ZBTB7AO95365 584 aa6.93□□□□□ -1.3
CD44-239ENST00000639002 HOXC12P31275 282 aa6.93□□□□□ -1.3
CD44-239ENST00000639002 CACNB2Q08289 660 aaPredicted RBP6.93□□□□□ -1.3
CD44-239ENST00000639002 PRSS53Q2L4Q9 553 aa6.93□□□□□ -1.3
CD44-239ENST00000639002 LIPIQ6XZB0 460 aa6.93□□□□□ -1.3
CD44-239ENST00000639002 ADAM7Q9H2U9 754 aa6.93□□□□□ -1.3
CD44-239ENST00000639002 SPATA6Q9NWH7 488 aaPredicted RBP6.93□□□□□ -1.3
CD44-239ENST00000639002 FBXL7Q9UJT9 491 aa6.93□□□□□ -1.3
CD44-239ENST00000639002 NUDT5Q9UKK9 219 aa6.93□□□□□ -1.3
CD44-239ENST00000639002 FAN1Q9Y2M0 1017 aa6.93□□□□□ -1.3
CD44-239ENST00000639002 CCDC9Q9Y3X0 531 aaKnown RBP6.93□□□□□ -1.3
CD44-239ENST00000639002 C22orf46C9J442 243 aa6.92□□□□□ -1.3
CD44-239ENST00000639002 GJB6O95452 261 aa6.92□□□□□ -1.3
CD44-239ENST00000639002 FPR2P25090 351 aa6.92□□□□□ -1.3
CD44-239ENST00000639002 ECI1P42126 302 aa6.92□□□□□ -1.3
CD44-239ENST00000639002 TESK1Q15569 626 aa6.92□□□□□ -1.3
CD44-239ENST00000639002 FXNQ16595 210 aa6.92□□□□□ -1.3
CD44-239ENST00000639002 NLRP10Q86W26 655 aa6.92□□□□□ -1.3
CD44-239ENST00000639002 Q8N1Y9 231 aa6.92□□□□□ -1.3
CD44-239ENST00000639002 CXorf38Q8TB03 319 aa6.92□□□□□ -1.3
CD44-239ENST00000639002 C1orf159Q96HA4 380 aa6.92□□□□□ -1.3
CD44-239ENST00000639002 BTG4Q9NY30 223 aa6.92□□□□□ -1.3
CD44-239ENST00000639002 C8BP07358 591 aa6.91□□□□□ -1.3
CD44-239ENST00000639002 SNRPB2P08579 225 aaKnown RBP6.91□□□□□ -1.3
CD44-239ENST00000639002 LCP1P13796 627 aa6.91□□□□□ -1.3
CD44-239ENST00000639002 GRIA2P42262 883 aa6.91□□□□□ -1.3
CD44-239ENST00000639002 KCNC1P48547 511 aa6.91□□□□□ -1.3
CD44-239ENST00000639002 GFRA1P56159 465 aa6.91□□□□□ -1.3
CD44-239ENST00000639002 ARID5AQ03989 594 aa6.91□□□□□ -1.3
CD44-239ENST00000639002 LCE5AQ5TCM9 118 aa6.91□□□□□ -1.3
CD44-239ENST00000639002 E4F1Q66K89 784 aaPredicted RBP6.91□□□□□ -1.3
CD44-239ENST00000639002 IQCEQ6IPM2 695 aa6.91□□□□□ -1.3
CD44-239ENST00000639002 CELF2-AS1Q8N7Q2 184 aa6.91□□□□□ -1.3
CD44-239ENST00000639002 RCBTB1Q8NDN9 531 aa6.91□□□□□ -1.3
CD44-239ENST00000639002 SPATA25Q9BR10 227 aa6.91□□□□□ -1.3
CD44-239ENST00000639002 IGSF5Q9NSI5 407 aa6.91□□□□□ -1.3
CD44-239ENST00000639002 TIMM13Q9Y5L4 95 aaPredicted RBP6.91□□□□□ -1.3
CD44-239ENST00000639002 X6R8D5 127 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms