RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 F8W031 263 aaPredicted RBP16.6■□□□□ 0.25
CLN3-253ENST00000636977 PDE2AO00408 941 aaPredicted RBP16.6■□□□□ 0.25
CLN3-253ENST00000636977 PHACTR2O75167 634 aa16.6■□□□□ 0.25
CLN3-253ENST00000636977 CCDC155Q8N6L0 562 aa16.6■□□□□ 0.25
CLN3-253ENST00000636977 RPGRQ92834 1020 aaKnown RBP16.6■□□□□ 0.25
CLN3-253ENST00000636977 MTMR9Q96QG7 549 aa16.6■□□□□ 0.25
CLN3-253ENST00000636977 CASP8Q14790 479 aa16.6■□□□□ 0.25
CLN3-253ENST00000636977 ECM1Q16610 540 aa16.6■□□□□ 0.25
CLN3-253ENST00000636977 UBE2SQ16763 222 aa16.6■□□□□ 0.25
CLN3-253ENST00000636977 CUEDC2Q9H467 287 aa16.6■□□□□ 0.25
CLN3-253ENST00000636977 LRRC4BQ9NT99 713 aa16.6■□□□□ 0.25
CLN3-253ENST00000636977 LRWD1Q9UFC0 647 aa16.6■□□□□ 0.25
CLN3-253ENST00000636977 SAR1BQ9Y6B6 198 aa16.6■□□□□ 0.25
CLN3-253ENST00000636977 ZBED6P86452 979 aa16.59■□□□□ 0.25
CLN3-253ENST00000636977 CALCRLQ16602 461 aa16.59■□□□□ 0.25
CLN3-253ENST00000636977 BICDL2A1A5D9 508 aa16.59■□□□□ 0.25
CLN3-253ENST00000636977 AKR1B1P15121 316 aa16.59■□□□□ 0.25
CLN3-253ENST00000636977 VPS72Q15906 364 aa16.59■□□□□ 0.25
CLN3-253ENST00000636977 EP400NLQ6ZTU2 488 aa16.59■□□□□ 0.25
CLN3-253ENST00000636977 GSPT2Q8IYD1 628 aaKnown RBP16.59■□□□□ 0.25
CLN3-253ENST00000636977 C10orf67Q8IYJ2 551 aa16.59■□□□□ 0.25
CLN3-253ENST00000636977 NOC3LQ8WTT2 800 aaKnown RBP16.59■□□□□ 0.25
CLN3-253ENST00000636977 POTEB2H3BUK9 544 aa16.59■□□□□ 0.25
CLN3-253ENST00000636977 IDEP14735 1019 aa16.59■□□□□ 0.25
CLN3-253ENST00000636977 TTBK2Q6IQ55 1244 aa16.59■□□□□ 0.25
CLN3-253ENST00000636977 ZSCAN29Q8IWY8 852 aaPredicted RBP16.59■□□□□ 0.25
CLN3-253ENST00000636977 CALML4Q96GE6 196 aa16.59■□□□□ 0.25
CLN3-253ENST00000636977 MXD3Q9BW11 206 aa16.59■□□□□ 0.25
CLN3-253ENST00000636977 RIOX1Q9H6W3 641 aa16.59■□□□□ 0.25
CLN3-253ENST00000636977 FAN1Q9Y2M0 1017 aa16.59■□□□□ 0.25
CLN3-253ENST00000636977 PPP1R11O60927 126 aaPredicted RBP16.58■□□□□ 0.24
CLN3-253ENST00000636977 LMAN1P49257 510 aa16.58■□□□□ 0.24
CLN3-253ENST00000636977 FAM193AP78312 1265 aa16.58■□□□□ 0.24
CLN3-253ENST00000636977 MRPS25P82663 173 aaKnown RBP16.58■□□□□ 0.24
CLN3-253ENST00000636977 PAPD7Q5XG87 772 aaKnown RBP16.58■□□□□ 0.24
CLN3-253ENST00000636977 SV2BQ7L1I2 683 aa16.58■□□□□ 0.24
CLN3-253ENST00000636977 DRC1Q96MC2 740 aa16.58■□□□□ 0.24
CLN3-253ENST00000636977 ZNF287Q9HBT7 754 aa16.58■□□□□ 0.24
CLN3-253ENST00000636977 ARHGAP20Q9P2F6 1191 aa16.58■□□□□ 0.24
CLN3-253ENST00000636977 GGA1Q9UJY5 639 aa16.58■□□□□ 0.24
CLN3-253ENST00000636977 ERLIN1O75477 346 aa16.58■□□□□ 0.24
CLN3-253ENST00000636977 IL1R1P14778 569 aa16.58■□□□□ 0.24
CLN3-253ENST00000636977 SLC16A2P36021 539 aa16.58■□□□□ 0.24
CLN3-253ENST00000636977 KRT83P78385 493 aa16.58■□□□□ 0.24
CLN3-253ENST00000636977 CENPPQ6IPU0 288 aa16.58■□□□□ 0.24
CLN3-253ENST00000636977 DPP8Q6V1X1 898 aaPredicted RBP16.58■□□□□ 0.24
CLN3-253ENST00000636977 C2CD5Q86YS7 1000 aa16.58■□□□□ 0.24
CLN3-253ENST00000636977 MLXIPQ9HAP2 919 aa16.58■□□□□ 0.24
CLN3-253ENST00000636977 ZNHIT6Q9NWK9 470 aaKnown RBP16.58■□□□□ 0.24
CLN3-253ENST00000636977 EIF3CLB5ME19 914 aaKnown RBP16.57■□□□□ 0.24
CLN3-253ENST00000636977 RIMBP2O15034 1052 aa16.57■□□□□ 0.24
CLN3-253ENST00000636977 CYLC1P35663 651 aaPredicted RBP16.57■□□□□ 0.24
CLN3-253ENST00000636977 TNNI2P48788 182 aa16.57■□□□□ 0.24
CLN3-253ENST00000636977 USP14P54578 494 aa16.57■□□□□ 0.24
CLN3-253ENST00000636977 CNNM4Q6P4Q7 775 aa16.57■□□□□ 0.24
CLN3-253ENST00000636977 CCDC47Q96A33 483 aaKnown RBP16.57■□□□□ 0.24
CLN3-253ENST00000636977 ERGIC2Q96RQ1 377 aa16.57■□□□□ 0.24
CLN3-253ENST00000636977 EIF3CQ99613 913 aaKnown RBP16.57■□□□□ 0.24
CLN3-253ENST00000636977 MAGEF1Q9HAY2 307 aa16.57■□□□□ 0.24
CLN3-253ENST00000636977 DDX4Q9NQI0 724 aaKnown RBP16.57■□□□□ 0.24
CLN3-253ENST00000636977 MTMR4Q9NYA4 1195 aa16.57■□□□□ 0.24
CLN3-253ENST00000636977 DAGLAQ9Y4D2 1042 aa16.57■□□□□ 0.24
CLN3-253ENST00000636977 KRT86O43790 486 aa16.57■□□□□ 0.24
CLN3-253ENST00000636977 MYBL2P10244 700 aa16.57■□□□□ 0.24
CLN3-253ENST00000636977 GTF2IP78347 998 aa16.57■□□□□ 0.24
CLN3-253ENST00000636977 LARP4BQ92615 738 aaKnown RBP16.57■□□□□ 0.24
CLN3-253ENST00000636977 MMRN2Q9H8L6 949 aa16.57■□□□□ 0.24
CLN3-253ENST00000636977 SIK3Q9Y2K2 1263 aa16.57■□□□□ 0.24
CLN3-253ENST00000636977 CAPN6Q9Y6Q1 641 aa16.57■□□□□ 0.24
CLN3-253ENST00000636977 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.56■□□□□ 0.24
CLN3-253ENST00000636977 GTF2A1P52655 376 aaPredicted RBP16.56■□□□□ 0.24
CLN3-253ENST00000636977 AMPD3Q01432 767 aa16.56■□□□□ 0.24
CLN3-253ENST00000636977 C15orf52Q6ZUT6 534 aaKnown RBP16.56■□□□□ 0.24
CLN3-253ENST00000636977 PSMB7Q99436 277 aa16.56■□□□□ 0.24
CLN3-253ENST00000636977 NUP58Q9BVL2 599 aa16.56■□□□□ 0.24
CLN3-253ENST00000636977 FGFBP2Q9BYJ0 223 aa16.56■□□□□ 0.24
CLN3-253ENST00000636977 TSPYL1Q9H0U9 437 aa16.56■□□□□ 0.24
CLN3-253ENST00000636977 NDST4Q9H3R1 872 aa16.56■□□□□ 0.24
CLN3-253ENST00000636977 C6orf229H3BNL8 230 aa16.56■□□□□ 0.24
CLN3-253ENST00000636977 ADCY7P51828 1080 aa16.56■□□□□ 0.24
CLN3-253ENST00000636977 C2orf54Q08AI8 447 aa16.56■□□□□ 0.24
CLN3-253ENST00000636977 VWA3BQ502W6 1294 aa16.56■□□□□ 0.24
CLN3-253ENST00000636977 TBC1D16Q8TBP0 767 aa16.56■□□□□ 0.24
CLN3-253ENST00000636977 SNX29Q8TEQ0 813 aa16.56■□□□□ 0.24
CLN3-253ENST00000636977 CCDC102AQ96A19 550 aa16.56■□□□□ 0.24
CLN3-253ENST00000636977 KANSL2Q9H9L4 492 aa16.56■□□□□ 0.24
CLN3-253ENST00000636977 JADE2Q9NQC1 790 aa16.56■□□□□ 0.24
CLN3-253ENST00000636977 SMARCAL1Q9NZC9 954 aa16.56■□□□□ 0.24
CLN3-253ENST00000636977 FKBP15Q5T1M5 1219 aa16.56■□□□□ 0.24
CLN3-253ENST00000636977 FAM114A1Q8IWE2 563 aa16.56■□□□□ 0.24
CLN3-253ENST00000636977 ANKRD13CQ8N6S4 541 aa16.56■□□□□ 0.24
CLN3-253ENST00000636977 GPATCH11Q8N954 259 aa16.56■□□□□ 0.24
CLN3-253ENST00000636977 DDX12PQ92771 950 aa16.56■□□□□ 0.24
CLN3-253ENST00000636977 CCDC42Q96M95 316 aa16.56■□□□□ 0.24
CLN3-253ENST00000636977 TBC1D7Q9P0N9 293 aa16.56■□□□□ 0.24
CLN3-253ENST00000636977 NOVP48745 357 aa16.55■□□□□ 0.24
CLN3-253ENST00000636977 APBA1Q02410 837 aa16.55■□□□□ 0.24
CLN3-253ENST00000636977 CCDC96Q2M329 555 aa16.55■□□□□ 0.24
CLN3-253ENST00000636977 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.55■□□□□ 0.24
CLN3-253ENST00000636977 UNC13DQ70J99 1090 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms