RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 VWCEQ96DN2 955 aa9.23□□□□□ -0.93
CLK1-215ENST00000621181 SLC9A7Q96T83 725 aa9.23□□□□□ -0.93
CLK1-215ENST00000621181 FTOQ9C0B1 505 aaKnown RBP eCLIP9.23□□□□□ -0.93
CLK1-215ENST00000621181 IL17RBQ9NRM6 502 aa9.23□□□□□ -0.93
CLK1-215ENST00000621181 MTCH2Q9Y6C9 303 aa9.23□□□□□ -0.93
CLK1-215ENST00000621181 SCN5AQ14524 2016 aa9.23□□□□□ -0.93
CLK1-215ENST00000621181 LCTP09848 1927 aa9.22□□□□□ -0.93
CLK1-215ENST00000621181 KIF28PB7ZC32 967 aa9.22□□□□□ -0.93
CLK1-215ENST00000621181 NFIBO00712 420 aa9.22□□□□□ -0.93
CLK1-215ENST00000621181 SLC16A2P36021 539 aa9.22□□□□□ -0.93
CLK1-215ENST00000621181 CTDSPL2Q05D32 466 aa9.22□□□□□ -0.93
CLK1-215ENST00000621181 PPP2R5BQ15173 497 aa9.22□□□□□ -0.93
CLK1-215ENST00000621181 RETREG2Q8NC44 543 aa9.22□□□□□ -0.93
CLK1-215ENST00000621181 ARNTL2Q8WYA1 636 aa9.22□□□□□ -0.93
CLK1-215ENST00000621181 MPHOSPH6Q99547 160 aaKnown RBP9.22□□□□□ -0.93
CLK1-215ENST00000621181 MTG1Q9BT17 334 aaPredicted RBP9.22□□□□□ -0.93
CLK1-215ENST00000621181 TOMM22Q9NS69 142 aa9.22□□□□□ -0.93
CLK1-215ENST00000621181 NOD1Q9Y239 953 aa9.22□□□□□ -0.93
CLK1-215ENST00000621181 TTC41PQ6P2S7 1318 aa9.22□□□□□ -0.93
CLK1-215ENST00000621181 LOC102724159A0A0B4J2E5 919 aa9.21□□□□□ -0.93
CLK1-215ENST00000621181 IQCF3P0C7M6 154 aa9.21□□□□□ -0.93
CLK1-215ENST00000621181 CALML3P27482 149 aa9.21□□□□□ -0.93
CLK1-215ENST00000621181 RFC2P35250 354 aa9.21□□□□□ -0.93
CLK1-215ENST00000621181 ANP32AP39687 249 aaKnown RBP9.21□□□□□ -0.93
CLK1-215ENST00000621181 CHMP4BP1P59074 171 aa9.21□□□□□ -0.93
CLK1-215ENST00000621181 PDE4DQ08499 809 aa9.21□□□□□ -0.93
CLK1-215ENST00000621181 PWP2Q15269 919 aaKnown RBP9.21□□□□□ -0.93
CLK1-215ENST00000621181 NBPF20Q3BBV1 942 aa9.21□□□□□ -0.93
CLK1-215ENST00000621181 KRT40Q6A162 431 aa9.21□□□□□ -0.93
CLK1-215ENST00000621181 NFRKBQ6P4R8 1299 aa9.21□□□□□ -0.93
CLK1-215ENST00000621181 PHOSPHO2Q8TCD6 241 aa9.21□□□□□ -0.93
CLK1-215ENST00000621181 DCAF4Q8WV16 495 aa9.21□□□□□ -0.93
CLK1-215ENST00000621181 RANBP17Q9H2T7 1088 aaKnown RBP9.21□□□□□ -0.93
CLK1-215ENST00000621181 DCTPP1Q9H773 170 aa9.21□□□□□ -0.93
CLK1-215ENST00000621181 INCENPQ9NQS7 918 aa9.21□□□□□ -0.93
CLK1-215ENST00000621181 COG5Q9UP83 839 aa9.21□□□□□ -0.93
CLK1-215ENST00000621181 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.21□□□□□ -0.93
CLK1-215ENST00000621181 FRMPD2Q68DX3 1309 aaPredicted RBP9.21□□□□□ -0.94
CLK1-215ENST00000621181 SCN10AQ9Y5Y9 1956 aa9.21□□□□□ -0.94
CLK1-215ENST00000621181 EPOPA6NHQ4 379 aa9.21□□□□□ -0.94
CLK1-215ENST00000621181 NKRFO15226 690 aaKnown RBP eCLIP9.21□□□□□ -0.94
CLK1-215ENST00000621181 POU3F3P20264 500 aaPredicted RBP9.21□□□□□ -0.94
CLK1-215ENST00000621181 BFSP2Q13515 415 aa9.21□□□□□ -0.94
CLK1-215ENST00000621181 ZMYM1Q5SVZ6 1142 aa9.21□□□□□ -0.94
CLK1-215ENST00000621181 SYDE2Q5VT97 1194 aa9.21□□□□□ -0.94
CLK1-215ENST00000621181 TTBK2Q6IQ55 1244 aa9.21□□□□□ -0.94
CLK1-215ENST00000621181 SLC30A10Q6XR72 485 aa9.21□□□□□ -0.94
CLK1-215ENST00000621181 RNF207Q6ZRF8 634 aa9.21□□□□□ -0.94
CLK1-215ENST00000621181 HERC6Q8IVU3 1022 aa9.21□□□□□ -0.94
CLK1-215ENST00000621181 ZNF579Q8NAF0 562 aaKnown RBP9.21□□□□□ -0.94
CLK1-215ENST00000621181 SCFD2Q8WU76 684 aa9.21□□□□□ -0.94
CLK1-215ENST00000621181 PPP1R13LQ8WUF5 828 aa9.21□□□□□ -0.94
CLK1-215ENST00000621181 HLA-CQ95604 372 aa9.21□□□□□ -0.94
CLK1-215ENST00000621181 HCN4Q9Y3Q4 1203 aa9.21□□□□□ -0.94
CLK1-215ENST00000621181 BRWD1Q9NSI6 2320 aa9.21□□□□□ -0.94
CLK1-215ENST00000621181 TET1Q8NFU7 2136 aa9.21□□□□□ -0.94
CLK1-215ENST00000621181 B4DLN1 442 aa9.2□□□□□ -0.94
CLK1-215ENST00000621181 TLL1O43897 1013 aa9.2□□□□□ -0.94
CLK1-215ENST00000621181 KPNA6O60684 536 aa9.2□□□□□ -0.94
CLK1-215ENST00000621181 KCNJ6P48051 423 aa9.2□□□□□ -0.94
CLK1-215ENST00000621181 MRPL12P52815 198 aaKnown RBP9.2□□□□□ -0.94
CLK1-215ENST00000621181 TAP1Q03518 808 aa9.2□□□□□ -0.94
CLK1-215ENST00000621181 RRP12Q5JTH9 1297 aaKnown RBP9.2□□□□□ -0.94
CLK1-215ENST00000621181 PI4K2BQ8TCG2 481 aa9.2□□□□□ -0.94
CLK1-215ENST00000621181 GPCPD1Q9NPB8 672 aa9.2□□□□□ -0.94
CLK1-215ENST00000621181 TRIP12Q14669 1992 aaPredicted RBP9.2□□□□□ -0.94
CLK1-215ENST00000621181 RBM47A0AV96 593 aaKnown RBP9.19□□□□□ -0.94
CLK1-215ENST00000621181 BAIAP3O94812 1187 aa9.19□□□□□ -0.94
CLK1-215ENST00000621181 TXNP10599 105 aaKnown RBP9.19□□□□□ -0.94
CLK1-215ENST00000621181 RPS6P62753 249 aaKnown RBP9.19□□□□□ -0.94
CLK1-215ENST00000621181 BTNL9Q6UXG8 535 aa9.19□□□□□ -0.94
CLK1-215ENST00000621181 DNERQ8NFT8 737 aa9.19□□□□□ -0.94
CLK1-215ENST00000621181 COPS5Q92905 334 aa9.19□□□□□ -0.94
CLK1-215ENST00000621181 ZBED2Q9BTP6 218 aa9.19□□□□□ -0.94
CLK1-215ENST00000621181 PNMA2Q9UL42 364 aa9.19□□□□□ -0.94
CLK1-215ENST00000621181 TANC1Q9C0D5 1861 aa9.19□□□□□ -0.94
CLK1-215ENST00000621181 A6NJR5 290 aa9.19□□□□□ -0.94
CLK1-215ENST00000621181 FOXP2O15409 715 aa9.19□□□□□ -0.94
CLK1-215ENST00000621181 ORC4O43929 436 aa9.19□□□□□ -0.94
CLK1-215ENST00000621181 ARHGEF15O94989 841 aa9.19□□□□□ -0.94
CLK1-215ENST00000621181 TOP1P11387 765 aaKnown RBP9.19□□□□□ -0.94
CLK1-215ENST00000621181 MX1P20591 662 aa9.19□□□□□ -0.94
CLK1-215ENST00000621181 PTPN11Q06124 597 aaPredicted RBP9.19□□□□□ -0.94
CLK1-215ENST00000621181 PTGISQ16647 500 aa9.19□□□□□ -0.94
CLK1-215ENST00000621181 CCDC155Q8N6L0 562 aa9.19□□□□□ -0.94
CLK1-215ENST00000621181 CLEC4DQ8WXI8 215 aa9.19□□□□□ -0.94
CLK1-215ENST00000621181 TMEM47Q9BQJ4 181 aa9.19□□□□□ -0.94
CLK1-215ENST00000621181 EPHX3Q9H6B9 360 aa9.19□□□□□ -0.94
CLK1-215ENST00000621181 ANAPC4Q9UJX5 808 aa9.19□□□□□ -0.94
CLK1-215ENST00000621181 GABBR2O75899 941 aa9.18□□□□□ -0.94
CLK1-215ENST00000621181 PDHBP11177 359 aa9.18□□□□□ -0.94
CLK1-215ENST00000621181 EDNRBP24530 442 aa9.18□□□□□ -0.94
CLK1-215ENST00000621181 NOVP48745 357 aa9.18□□□□□ -0.94
CLK1-215ENST00000621181 GRB10Q13322 594 aa9.18□□□□□ -0.94
CLK1-215ENST00000621181 TMEM31Q5JXX7 168 aa9.18□□□□□ -0.94
CLK1-215ENST00000621181 VPS53Q5VIR6 699 aa9.18□□□□□ -0.94
CLK1-215ENST00000621181 CENPQQ7L2Z9 268 aaPredicted RBP9.18□□□□□ -0.94
CLK1-215ENST00000621181 SKAP1Q86WV1 359 aa9.18□□□□□ -0.94
CLK1-215ENST00000621181 CAGE1Q8TC20 777 aa9.18□□□□□ -0.94
CLK1-215ENST00000621181 OTUD7AQ8TE49 926 aaPredicted RBP9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms