RNA–Protein interactions for RNA: ENST00000620996.4

VTA1-205, Transcript of vesicle trafficking 1, humanhuman

TSL 3 BASIC

Gene VTA1, Length 3,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-205ENST00000620996 FKBP1CQ5VVH2 108 aa11.15□□□□□ -0.62
VTA1-205ENST00000620996 ENOX1Q8TC92 643 aaKnown RBP11.15□□□□□ -0.62
VTA1-205ENST00000620996 CHURC1Q8WUH1 139 aa11.15□□□□□ -0.62
VTA1-205ENST00000620996 NELFBQ8WX92 580 aa11.15□□□□□ -0.62
VTA1-205ENST00000620996 HSD3B7Q9H2F3 369 aa11.15□□□□□ -0.62
VTA1-205ENST00000620996 HOMER2Q9NSB8 354 aa11.15□□□□□ -0.62
VTA1-205ENST00000620996 EXOC1Q9NV70 894 aa11.15□□□□□ -0.62
VTA1-205ENST00000620996 PCDHA12Q9UN75 941 aa11.15□□□□□ -0.62
VTA1-205ENST00000620996 SKILP12757 684 aa11.15□□□□□ -0.62
VTA1-205ENST00000620996 SFPQP23246 707 aaKnown RBP eCLIP11.15□□□□□ -0.62
VTA1-205ENST00000620996 RPS12P25398 132 aaKnown RBP11.15□□□□□ -0.62
VTA1-205ENST00000620996 ARHGAP4P98171 946 aa11.15□□□□□ -0.62
VTA1-205ENST00000620996 MCM6Q14566 821 aa11.15□□□□□ -0.62
VTA1-205ENST00000620996 KMT5BQ4FZB7 885 aa11.15□□□□□ -0.62
VTA1-205ENST00000620996 NBPF12Q5TAG4 269 aaPredicted RBP11.15□□□□□ -0.62
VTA1-205ENST00000620996 ZNF646O15015 1829 aaPredicted RBP11.15□□□□□ -0.62
VTA1-205ENST00000620996 CCT6AP40227 531 aaKnown RBP11.15□□□□□ -0.63
VTA1-205ENST00000620996 STAT3P40763 770 aa11.15□□□□□ -0.63
VTA1-205ENST00000620996 CLK2P49760 499 aaKnown RBP11.15□□□□□ -0.63
VTA1-205ENST00000620996 PRELPP51888 382 aa11.15□□□□□ -0.63
VTA1-205ENST00000620996 PDE4DQ08499 809 aa11.15□□□□□ -0.63
VTA1-205ENST00000620996 PAK1Q13153 545 aa11.15□□□□□ -0.63
VTA1-205ENST00000620996 LRRC8AQ8IWT6 810 aa11.15□□□□□ -0.63
VTA1-205ENST00000620996 SPATA20Q8TB22 786 aa11.15□□□□□ -0.63
VTA1-205ENST00000620996 MEIS2O14770 477 aa11.14□□□□□ -0.63
VTA1-205ENST00000620996 NRDCO43847 1150 aa11.14□□□□□ -0.63
VTA1-205ENST00000620996 ERCC5P28715 1186 aaPredicted RBP11.14□□□□□ -0.63
VTA1-205ENST00000620996 INPP5BP32019 993 aa11.14□□□□□ -0.63
VTA1-205ENST00000620996 PTGER2P43116 358 aa11.14□□□□□ -0.63
VTA1-205ENST00000620996 STIM1Q13586 685 aa11.14□□□□□ -0.63
VTA1-205ENST00000620996 UTP14CQ5TAP6 766 aaKnown RBP11.14□□□□□ -0.63
VTA1-205ENST00000620996 NCAPH2Q6IBW4 605 aa11.14□□□□□ -0.63
VTA1-205ENST00000620996 SV2BQ7L1I2 683 aa11.14□□□□□ -0.63
VTA1-205ENST00000620996 LRRC15Q8TF66 581 aa11.14□□□□□ -0.63
VTA1-205ENST00000620996 TBC1D5Q92609 795 aa11.14□□□□□ -0.63
VTA1-205ENST00000620996 EEF2KMTQ96G04 330 aa11.14□□□□□ -0.63
VTA1-205ENST00000620996 MTMR9Q96QG7 549 aa11.14□□□□□ -0.63
VTA1-205ENST00000620996 NUDT12Q9BQG2 462 aa11.14□□□□□ -0.63
VTA1-205ENST00000620996 COL2A1P02458 1487 aaPredicted RBP11.14□□□□□ -0.63
VTA1-205ENST00000620996 PPP1R3GB7ZBB8 358 aa11.14□□□□□ -0.63
VTA1-205ENST00000620996 IRX3P78415 501 aaPredicted RBP11.14□□□□□ -0.63
VTA1-205ENST00000620996 AMPD3Q01432 767 aa11.14□□□□□ -0.63
VTA1-205ENST00000620996 ZNF658Q5TYW1 1059 aaPredicted RBP11.14□□□□□ -0.63
VTA1-205ENST00000620996 SPATA1Q5VX52 437 aa11.14□□□□□ -0.63
VTA1-205ENST00000620996 ZNF771Q7L3S4 317 aaPredicted RBP11.14□□□□□ -0.63
VTA1-205ENST00000620996 UPF1Q92900 1129 aaKnown RBP eCLIP11.14□□□□□ -0.631e-6■□□□□ 9.2
VTA1-205ENST00000620996 HPS3Q969F9 1004 aa11.14□□□□□ -0.63
VTA1-205ENST00000620996 TRERF1Q96PN7 1200 aa11.14□□□□□ -0.63
VTA1-205ENST00000620996 ZHX3Q9H4I2 956 aa11.14□□□□□ -0.63
VTA1-205ENST00000620996 TRMT1Q9NXH9 659 aaKnown RBP11.14□□□□□ -0.63
VTA1-205ENST00000620996 TRIM49BA6NDI0 452 aa11.13□□□□□ -0.63
VTA1-205ENST00000620996 GCFC2P16383 781 aaKnown RBP11.13□□□□□ -0.63
VTA1-205ENST00000620996 PRCPP42785 496 aa11.13□□□□□ -0.63
VTA1-205ENST00000620996 GSDMDP57764 484 aa11.13□□□□□ -0.63
VTA1-205ENST00000620996 RAD51AP2Q09MP3 1159 aa11.13□□□□□ -0.63
VTA1-205ENST00000620996 PPP4R3AQ6IN85 833 aa11.13□□□□□ -0.63
VTA1-205ENST00000620996 IGSF22Q8N9C0 903 aa11.13□□□□□ -0.63
VTA1-205ENST00000620996 KIAA1524Q8TCG1 905 aa11.13□□□□□ -0.63
VTA1-205ENST00000620996 MMTAG2Q9BU76 263 aaKnown RBP11.13□□□□□ -0.63
VTA1-205ENST00000620996 CCDC94Q9BW85 323 aaPredicted RBP11.13□□□□□ -0.63
VTA1-205ENST00000620996 EDIL3O43854 480 aa11.13□□□□□ -0.63
VTA1-205ENST00000620996 TBC1D12O60347 775 aa11.13□□□□□ -0.63
VTA1-205ENST00000620996 ZNF280AP59817 542 aaPredicted RBP11.13□□□□□ -0.63
VTA1-205ENST00000620996 AP3B2Q13367 1082 aa11.13□□□□□ -0.63
VTA1-205ENST00000620996 ORC2Q13416 577 aaPredicted RBP11.13□□□□□ -0.63
VTA1-205ENST00000620996 MTMR2Q13614 643 aa11.13□□□□□ -0.63
VTA1-205ENST00000620996 ZBED3Q96IU2 234 aaPredicted RBP11.13□□□□□ -0.63
VTA1-205ENST00000620996 TRIM47Q96LD4 638 aa11.13□□□□□ -0.63
VTA1-205ENST00000620996 C16orf45Q96MC5 204 aaPredicted RBP11.13□□□□□ -0.63
VTA1-205ENST00000620996 MED15Q96RN5 788 aa11.13□□□□□ -0.63
VTA1-205ENST00000620996 CCPG1Q9ULG6 757 aa11.13□□□□□ -0.63
VTA1-205ENST00000620996 GREB1LQ9C091 1923 aaPredicted RBP11.13□□□□□ -0.63
VTA1-205ENST00000620996 GCOM1H8Y6P7 765 aaPredicted RBP11.13□□□□□ -0.63
VTA1-205ENST00000620996 CHMP2AO43633 222 aa11.13□□□□□ -0.63
VTA1-205ENST00000620996 KRT18P05783 430 aaKnown RBP11.13□□□□□ -0.63
VTA1-205ENST00000620996 POLR2MP0CAP2 368 aa11.13□□□□□ -0.63
VTA1-205ENST00000620996 FXR2P51116 673 aaKnown RBP eCLIP11.13□□□□□ -0.63
VTA1-205ENST00000620996 GRB10Q13322 594 aa11.13□□□□□ -0.63
VTA1-205ENST00000620996 TRPM4Q8TD43 1214 aa11.13□□□□□ -0.63
VTA1-205ENST00000620996 CPLX3Q8WVH0 158 aa11.13□□□□□ -0.63
VTA1-205ENST00000620996 LARP4BQ92615 738 aaKnown RBP11.13□□□□□ -0.63
VTA1-205ENST00000620996 HAS1Q92839 578 aa11.13□□□□□ -0.63
VTA1-205ENST00000620996 ZKSCAN4Q969J2 545 aaPredicted RBP11.13□□□□□ -0.63
VTA1-205ENST00000620996 WRNIP1Q96S55 665 aa11.13□□□□□ -0.63
VTA1-205ENST00000620996 P2RX7Q99572 595 aaKnown RBP11.13□□□□□ -0.63
VTA1-205ENST00000620996 NAP1L4Q99733 375 aaKnown RBP11.13□□□□□ -0.63
VTA1-205ENST00000620996 GGA3Q9NZ52 723 aa11.13□□□□□ -0.63
VTA1-205ENST00000620996 FLOT1O75955 427 aa11.12□□□□□ -0.63
VTA1-205ENST00000620996 FILIP1LQ4L180 1135 aa11.12□□□□□ -0.63
VTA1-205ENST00000620996 ANKRD20A12PQ8NF67 263 aa11.12□□□□□ -0.63
VTA1-205ENST00000620996 HOOK2Q96ED9 719 aa11.12□□□□□ -0.63
VTA1-205ENST00000620996 AGBL1Q96MI9 1066 aa11.12□□□□□ -0.63
VTA1-205ENST00000620996 SGIP1Q9BQI5 828 aa11.12□□□□□ -0.63
VTA1-205ENST00000620996 SLC39A2Q9NP94 309 aa11.12□□□□□ -0.63
VTA1-205ENST00000620996 KBTBD4Q9NVX7 518 aa11.12□□□□□ -0.63
VTA1-205ENST00000620996 PKD2L1Q9P0L9 805 aa11.12□□□□□ -0.63
VTA1-205ENST00000620996 KIAA1024Q9UPX6 916 aa11.12□□□□□ -0.63
VTA1-205ENST00000620996 FZD9O00144 591 aa11.12□□□□□ -0.63
VTA1-205ENST00000620996 ALAS1P13196 640 aa11.12□□□□□ -0.63
VTA1-205ENST00000620996 SPP2Q13103 211 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms