RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 TTC28Q96AY4 2481 aa22.16■■□□□ 1.14
CDX1-202ENST00000616154 KDM4AO75164 1064 aa22.16■■□□□ 1.14
CDX1-202ENST00000616154 MYL3P08590 195 aa22.16■■□□□ 1.14
CDX1-202ENST00000616154 SUPT20HL2P0C7V6 817 aa22.16■■□□□ 1.14
CDX1-202ENST00000616154 USH1GQ495M9 461 aa22.16■■□□□ 1.14
CDX1-202ENST00000616154 BRDTQ58F21 947 aaPredicted RBP22.16■■□□□ 1.14
CDX1-202ENST00000616154 CENPQQ7L2Z9 268 aaPredicted RBP22.16■■□□□ 1.14
CDX1-202ENST00000616154 CPVLQ9H3G5 476 aa22.16■■□□□ 1.14
CDX1-202ENST00000616154 TRMT13Q9NUP7 481 aaKnown RBP22.16■■□□□ 1.14
CDX1-202ENST00000616154 MSRAQ9UJ68 235 aa22.16■■□□□ 1.14
CDX1-202ENST00000616154 KIAA1217Q5T5P2 1943 aa22.16■■□□□ 1.14
CDX1-202ENST00000616154 TNKSO95271 1327 aa22.16■■□□□ 1.14
CDX1-202ENST00000616154 CDC37Q16543 378 aaPredicted RBP22.15■■□□□ 1.14
CDX1-202ENST00000616154 OTOP2Q7RTS6 562 aa22.15■■□□□ 1.14
CDX1-202ENST00000616154 RPUSD2Q8IZ73 545 aaKnown RBP22.15■■□□□ 1.14
CDX1-202ENST00000616154 UBA5Q9GZZ9 404 aa22.15■■□□□ 1.14
CDX1-202ENST00000616154 KAT14Q9H8E8 782 aa22.15■■□□□ 1.14
CDX1-202ENST00000616154 GPHNQ9NQX3 736 aaPredicted RBP22.15■■□□□ 1.14
CDX1-202ENST00000616154 SCN5AQ14524 2016 aa22.15■■□□□ 1.14
CDX1-202ENST00000616154 TANC1Q9C0D5 1861 aa22.15■■□□□ 1.14
CDX1-202ENST00000616154 A6NJR5 290 aa22.14■■□□□ 1.14
CDX1-202ENST00000616154 KPNA6O60684 536 aa22.14■■□□□ 1.14
CDX1-202ENST00000616154 CHMLP26374 656 aa22.14■■□□□ 1.14
CDX1-202ENST00000616154 ASPRV1Q53RT3 343 aa22.14■■□□□ 1.14
CDX1-202ENST00000616154 USP38Q8NB14 1042 aa22.14■■□□□ 1.14
CDX1-202ENST00000616154 VWCEQ96DN2 955 aa22.14■■□□□ 1.14
CDX1-202ENST00000616154 ZSCAN10Q96SZ4 725 aaPredicted RBP22.14■■□□□ 1.14
CDX1-202ENST00000616154 CTNNA3Q9UI47 895 aa22.14■■□□□ 1.14
CDX1-202ENST00000616154 ABCB11O95342 1321 aa22.14■■□□□ 1.13
CDX1-202ENST00000616154 B4E1Z4 1266 aa22.13■■□□□ 1.13
CDX1-202ENST00000616154 TTLL4Q14679 1199 aa22.13■■□□□ 1.13
CDX1-202ENST00000616154 ENAHQ8N8S7 591 aaPredicted RBP22.13■■□□□ 1.13
CDX1-202ENST00000616154 COPS5Q92905 334 aa22.13■■□□□ 1.13
CDX1-202ENST00000616154 SCLYQ96I15 445 aa22.13■■□□□ 1.13
CDX1-202ENST00000616154 GAS2L1Q99501 681 aaPredicted RBP22.13■■□□□ 1.13
CDX1-202ENST00000616154 PFKMP08237 780 aa22.12■■□□□ 1.13
CDX1-202ENST00000616154 TXNP10599 105 aaKnown RBP22.12■■□□□ 1.13
CDX1-202ENST00000616154 CYP2C9P11712 490 aa22.12■■□□□ 1.13
CDX1-202ENST00000616154 IMMTQ16891 758 aaKnown RBP22.12■■□□□ 1.13
CDX1-202ENST00000616154 NBPF20Q3BBV1 942 aa22.12■■□□□ 1.13
CDX1-202ENST00000616154 NFRKBQ6P4R8 1299 aa22.12■■□□□ 1.13
CDX1-202ENST00000616154 ADGRF4Q8IZF3 695 aa22.12■■□□□ 1.13
CDX1-202ENST00000616154 RUFY2Q8WXA3 655 aa22.12■■□□□ 1.13
CDX1-202ENST00000616154 PRDM12Q9H4Q4 367 aa22.12■■□□□ 1.13
CDX1-202ENST00000616154 ZSWIM5Q9P217 1185 aa22.12■■□□□ 1.13
CDX1-202ENST00000616154 ARIH2O95376 493 aa22.11■■□□□ 1.13
CDX1-202ENST00000616154 PTPN11Q06124 597 aaPredicted RBP22.11■■□□□ 1.13
CDX1-202ENST00000616154 SYTL5Q8TDW5 730 aaPredicted RBP22.11■■□□□ 1.13
CDX1-202ENST00000616154 KRT23Q9C075 422 aa22.11■■□□□ 1.13
CDX1-202ENST00000616154 NKX2-4Q9H2Z4 354 aa22.11■■□□□ 1.13
CDX1-202ENST00000616154 YBX2Q9Y2T7 364 aaKnown RBP22.11■■□□□ 1.13
CDX1-202ENST00000616154 SLC4A7Q9Y6M7 1214 aa22.11■■□□□ 1.13
CDX1-202ENST00000616154 CHD7Q9P2D1 2997 aa22.11■■□□□ 1.13
CDX1-202ENST00000616154 PARP1P09874 1014 aaKnown RBP22.1■■□□□ 1.13
CDX1-202ENST00000616154 QRICH1Q2TAL8 776 aa22.1■■□□□ 1.13
CDX1-202ENST00000616154 FAM47CQ5HY64 1035 aa22.1■■□□□ 1.13
CDX1-202ENST00000616154 CCDC62Q6P9F0 684 aa22.1■■□□□ 1.13
CDX1-202ENST00000616154 MCF2L2Q86YR7 1114 aa22.1■■□□□ 1.13
CDX1-202ENST00000616154 NSUN6Q8TEA1 469 aaKnown RBP22.1■■□□□ 1.13
CDX1-202ENST00000616154 TBC1D5Q92609 795 aa22.1■■□□□ 1.13
CDX1-202ENST00000616154 SGSM2O43147 1006 aa22.09■■□□□ 1.13
CDX1-202ENST00000616154 SYMPKQ92797 1274 aaKnown RBP22.09■■□□□ 1.13
CDX1-202ENST00000616154 TAAR1Q96RJ0 339 aa22.09■■□□□ 1.13
CDX1-202ENST00000616154 CNNM2Q9H8M5 875 aa22.09■■□□□ 1.13
CDX1-202ENST00000616154 SLC28A3Q9HAS3 691 aa22.09■■□□□ 1.13
CDX1-202ENST00000616154 COL20A1Q9P218 1284 aa22.09■■□□□ 1.13
CDX1-202ENST00000616154 TRIP12Q14669 1992 aaPredicted RBP22.09■■□□□ 1.13
CDX1-202ENST00000616154 PITPNM1O00562 1244 aa22.08■■□□□ 1.13
CDX1-202ENST00000616154 RFC2P35250 354 aa22.08■■□□□ 1.13
CDX1-202ENST00000616154 FBXO11Q86XK2 927 aa22.08■■□□□ 1.13
CDX1-202ENST00000616154 IWS1Q96ST2 819 aa22.08■■□□□ 1.13
CDX1-202ENST00000616154 UBAC1Q9BSL1 405 aa22.08■■□□□ 1.13
CDX1-202ENST00000616154 JMJD4Q9H9V9 463 aa22.08■■□□□ 1.13
CDX1-202ENST00000616154 MRPL11Q9Y3B7 192 aaKnown RBP22.08■■□□□ 1.13
CDX1-202ENST00000616154 PCDHA11Q9Y5I1 949 aa22.08■■□□□ 1.13
CDX1-202ENST00000616154 ZBBXA8MT70 800 aa22.07■■□□□ 1.12
CDX1-202ENST00000616154 DHX16O60231 1041 aaKnown RBP22.07■■□□□ 1.12
CDX1-202ENST00000616154 ADGRE1Q14246 886 aa22.07■■□□□ 1.12
CDX1-202ENST00000616154 RMDN3Q96TC7 470 aa22.07■■□□□ 1.12
CDX1-202ENST00000616154 TET1Q8NFU7 2136 aa22.07■■□□□ 1.12
CDX1-202ENST00000616154 MYH7BA7E2Y1 1941 aa22.06■■□□□ 1.12
CDX1-202ENST00000616154 GH1P01241 217 aa22.06■■□□□ 1.12
CDX1-202ENST00000616154 MMP3P08254 477 aa22.06■■□□□ 1.12
CDX1-202ENST00000616154 ATP2A2P16615 1042 aaKnown RBP22.06■■□□□ 1.12
CDX1-202ENST00000616154 RABGGTBP53611 331 aa22.06■■□□□ 1.12
CDX1-202ENST00000616154 ARHGAP1Q07960 439 aa22.06■■□□□ 1.12
CDX1-202ENST00000616154 STXBP2Q15833 593 aa22.06■■□□□ 1.12
CDX1-202ENST00000616154 TJAP1Q5JTD0 557 aa22.06■■□□□ 1.12
CDX1-202ENST00000616154 SEPT14Q6ZU15 432 aa22.06■■□□□ 1.12
CDX1-202ENST00000616154 DEFB128Q7Z7B8 93 aa22.06■■□□□ 1.12
CDX1-202ENST00000616154 PPP1R13LQ8WUF5 828 aa22.06■■□□□ 1.12
CDX1-202ENST00000616154 AFG1LQ8WV93 481 aa22.06■■□□□ 1.12
CDX1-202ENST00000616154 IQCF3P0C7M6 154 aa22.06■■□□□ 1.12
CDX1-202ENST00000616154 ACTN1P12814 892 aa22.06■■□□□ 1.12
CDX1-202ENST00000616154 PTH1RQ03431 593 aa22.06■■□□□ 1.12
CDX1-202ENST00000616154 BFSP2Q13515 415 aa22.06■■□□□ 1.12
CDX1-202ENST00000616154 LY6KQ17RY6 165 aa22.06■■□□□ 1.12
CDX1-202ENST00000616154 IFIT1BQ5T764 474 aaKnown RBP22.06■■□□□ 1.12
CDX1-202ENST00000616154 RETREG2Q8NC44 543 aa22.06■■□□□ 1.12
CDX1-202ENST00000616154 VAT1LQ9HCJ6 419 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms