RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 EPB41L4AQ9HCS5 686 aaPredicted RBP11.49□□□□□ -0.57
LIG1-220ENST00000601091 TBC1D7Q9P0N9 293 aa11.49□□□□□ -0.57
LIG1-220ENST00000601091 SPATA7Q9P0W8 599 aa11.49□□□□□ -0.57
LIG1-220ENST00000601091 KLRF2D3W0D1 207 aa11.49□□□□□ -0.57
LIG1-220ENST00000601091 MFAP3LO75121 409 aa11.49□□□□□ -0.57
LIG1-220ENST00000601091 ATICP31939 592 aa11.49□□□□□ -0.57
LIG1-220ENST00000601091 KIF11P52732 1056 aa11.49□□□□□ -0.57
LIG1-220ENST00000601091 MKRN3Q13064 507 aaKnown RBP11.49□□□□□ -0.57
LIG1-220ENST00000601091 ARL6IP4Q66PJ3 421 aaKnown RBP11.49□□□□□ -0.57
LIG1-220ENST00000601091 RNF168Q8IYW5 571 aaPredicted RBP11.49□□□□□ -0.57
LIG1-220ENST00000601091 RPGRIP1Q96KN7 1286 aa11.49□□□□□ -0.57
LIG1-220ENST00000601091 NWD1Q149M9 1564 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 TRAF5O00463 557 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 TFRCP02786 760 aaKnown RBP11.48□□□□□ -0.57
LIG1-220ENST00000601091 ELF1P32519 619 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 INHBEP58166 350 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 NEDD9Q14511 834 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 HLTFQ14527 1009 aaKnown RBP eCLIP11.48□□□□□ -0.57
LIG1-220ENST00000601091 ERFEQ4G0M1 354 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 NCAPG2Q86XI2 1143 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 GPIHBP1Q8IV16 184 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 PARP9Q8IXQ6 854 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 CHCHD4Q8N4Q1 142 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 TATDN2Q93075 761 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 SLC7A5P2Q9GIP4 190 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 PCDHA4Q9UN74 947 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 COMMD10Q9Y6G5 202 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 TEX33O43247 280 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 HSF2BPO75031 334 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 EEF1GP26641 437 aaKnown RBP11.48□□□□□ -0.57
LIG1-220ENST00000601091 PLA2G4AP47712 749 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 MRPL12P52815 198 aaKnown RBP11.48□□□□□ -0.57
LIG1-220ENST00000601091 FMR1Q06787 632 aaKnown RBP eCLIP11.48□□□□□ -0.577e-8■■□□□ 12.6
LIG1-220ENST00000601091 NCAPHQ15003 741 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 KRT31Q15323 416 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 MICALCLQ6ZW33 695 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 LRP10Q7Z4F1 713 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 ZNF34Q8IZ26 560 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 REXO1Q8N1G1 1221 aaKnown RBP11.48□□□□□ -0.57
LIG1-220ENST00000601091 SPATA17Q96L03 361 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 FAM107BQ9H098 131 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 SEPT11Q9NVA2 429 aaKnown RBP11.48□□□□□ -0.57
LIG1-220ENST00000601091 UNCXA6NJT0 531 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 SLC26A4O43511 780 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 ADRA2BP18089 450 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 CCNHP51946 323 aaPredicted RBP11.48□□□□□ -0.57
LIG1-220ENST00000601091 ERMNQ8TAM6 284 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 RASGRP4Q8TDF6 673 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 EEF2KMTQ96G04 330 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 L2HGDHQ9H9P8 463 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 ZNF804BA4D1E1 1349 aa11.48□□□□□ -0.57
LIG1-220ENST00000601091 JCADQ9P266 1359 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 F8W031 263 aaPredicted RBP11.47□□□□□ -0.57
LIG1-220ENST00000601091 OPA1O60313 960 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 OR52Z1P0C646 297 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 ARID5AQ03989 594 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 CDC37Q16543 378 aaPredicted RBP11.47□□□□□ -0.57
LIG1-220ENST00000601091 LLGL2Q6P1M3 1020 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 USP49Q70CQ1 688 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 LCA5Q86VQ0 697 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 IQCDQ96DY2 449 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 RMDN2Q96LZ7 410 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 EYA3Q99504 573 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 MAP3K14Q99558 947 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 FHOD1Q9Y613 1164 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 LAD1O00515 517 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 MAGEA1P43355 309 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 IFI16Q16666 785 aaKnown RBP11.47□□□□□ -0.57
LIG1-220ENST00000601091 CCDC80Q76M96 950 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 DYMQ7RTS9 669 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 TUBGCP2Q9BSJ2 902 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 SUGCTQ9HAC7 445 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 FMN2Q9NZ56 1722 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 TADA3O75528 432 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 PARNO95453 639 aaKnown RBP11.47□□□□□ -0.57
LIG1-220ENST00000601091 MYL1P05976 194 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 TECP42680 631 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 VAV2P52735 878 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 NTRK3Q16288 839 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 CALCRLQ16602 461 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 CLEC4GQ6UXB4 293 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 ARHGAP27Q6ZUM4 889 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 EFCAB13Q8IY85 973 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 CNBD1Q8NA66 436 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 WDR24Q96S15 920 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 CUEDC2Q9H467 287 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 ADGRG1Q9Y653 693 aa11.47□□□□□ -0.57
LIG1-220ENST00000601091 FAM208AQ9UK61 1670 aaKnown RBP11.47□□□□□ -0.57
LIG1-220ENST00000601091 NFAT5O94916 1531 aa11.46□□□□□ -0.57
LIG1-220ENST00000601091 ATP6V1G1O75348 118 aa11.46□□□□□ -0.57
LIG1-220ENST00000601091 GOLGA8HP0CJ92 632 aa11.46□□□□□ -0.57
LIG1-220ENST00000601091 PYGBP11216 843 aa11.46□□□□□ -0.57
LIG1-220ENST00000601091 TBC1D25Q3MII6 688 aa11.46□□□□□ -0.57
LIG1-220ENST00000601091 TCP11X2Q5H9J9 407 aa11.46□□□□□ -0.57
LIG1-220ENST00000601091 NEK8Q86SG6 692 aa11.46□□□□□ -0.57
LIG1-220ENST00000601091 C3orf20Q8ND61 904 aa11.46□□□□□ -0.57
LIG1-220ENST00000601091 CUL5Q93034 780 aa11.46□□□□□ -0.57
LIG1-220ENST00000601091 DHTKD1Q96HY7 919 aaPredicted RBP11.46□□□□□ -0.57
LIG1-220ENST00000601091 UFL1O94874 794 aa11.46□□□□□ -0.57
LIG1-220ENST00000601091 CYP11B2P19099 503 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms