RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	IWS1	Q96ST2	819 aa		14.28	□□□□□ -0.12
ABCD4-223	ENST00000555904	PXMP2	Q9NR77	195 aa		14.28	□□□□□ -0.12
ABCD4-223	ENST00000555904	COL20A1	Q9P218	1284 aa		14.28	□□□□□ -0.12
ABCD4-223	ENST00000555904	ZNF236	Q9UL36	1845 aa		14.28	□□□□□ -0.12
ABCD4-223	ENST00000555904	CIZ1	Q9ULV3	898 aa	Predicted RBP	14.28	□□□□□ -0.12
ABCD4-223	ENST00000555904	MTMR6	Q9Y217	621 aa		14.28	□□□□□ -0.12
ABCD4-223	ENST00000555904	DIS3	Q9Y2L1	958 aa	Known RBP	14.28	□□□□□ -0.12
ABCD4-223	ENST00000555904	ATP6V1D	Q9Y5K8	247 aa		14.28	□□□□□ -0.12
ABCD4-223	ENST00000555904	PLXNB2	O15031	1838 aa		14.27	□□□□□ -0.12
ABCD4-223	ENST00000555904	ASB14	A6NK59	587 aa		14.27	□□□□□ -0.13
ABCD4-223	ENST00000555904		M0R2N6	131 aa		14.27	□□□□□ -0.13
ABCD4-223	ENST00000555904	FOXN1	O15353	648 aa		14.27	□□□□□ -0.13
ABCD4-223	ENST00000555904	HOXC6	P09630	235 aa		14.27	□□□□□ -0.13
ABCD4-223	ENST00000555904	CCND2	P30279	289 aa		14.27	□□□□□ -0.13
ABCD4-223	ENST00000555904	SREBF1	P36956	1147 aa		14.27	□□□□□ -0.13
ABCD4-223	ENST00000555904	ALDH5A1	P51649	535 aa	Predicted RBP	14.27	□□□□□ -0.13
ABCD4-223	ENST00000555904	PRMT2	P55345	433 aa		14.27	□□□□□ -0.13
ABCD4-223	ENST00000555904	PRKCZ	Q05513	592 aa		14.27	□□□□□ -0.13
ABCD4-223	ENST00000555904	ZNF792	Q3KQV3	632 aa		14.27	□□□□□ -0.13
ABCD4-223	ENST00000555904	XRRA1	Q6P2D8	792 aa		14.27	□□□□□ -0.13
ABCD4-223	ENST00000555904	ZNF467	Q7Z7K2	595 aa	Predicted RBP	14.27	□□□□□ -0.13
ABCD4-223	ENST00000555904	FERMT3	Q86UX7	667 aa		14.27	□□□□□ -0.13
ABCD4-223	ENST00000555904	TRMT44	Q8IYL2	757 aa	Known RBP	14.27	□□□□□ -0.13
ABCD4-223	ENST00000555904	TBCK	Q8TEA7	893 aa		14.27	□□□□□ -0.13
ABCD4-223	ENST00000555904	PGBD1	Q96JS3	809 aa		14.27	□□□□□ -0.13
ABCD4-223	ENST00000555904	TAAR1	Q96RJ0	339 aa		14.27	□□□□□ -0.13
ABCD4-223	ENST00000555904	NAP1L4	Q99733	375 aa	Known RBP	14.27	□□□□□ -0.13
ABCD4-223	ENST00000555904	SRRD	Q9UH36	339 aa		14.27	□□□□□ -0.13
ABCD4-223	ENST00000555904	COBL	O75128	1261 aa		14.26	□□□□□ -0.13
ABCD4-223	ENST00000555904	XRCC5	P13010	732 aa	Known RBP	14.26	□□□□□ -0.13
ABCD4-223	ENST00000555904	CYP2B6	P20813	491 aa		14.26	□□□□□ -0.13
ABCD4-223	ENST00000555904	CTGF	P29279	349 aa		14.26	□□□□□ -0.13
ABCD4-223	ENST00000555904	ZNF76	P36508	570 aa		14.26	□□□□□ -0.13
ABCD4-223	ENST00000555904	FLT3LG	P49771	235 aa		14.26	□□□□□ -0.13
ABCD4-223	ENST00000555904	ARHGAP4	P98171	946 aa		14.26	□□□□□ -0.13
ABCD4-223	ENST00000555904	PGM5	Q15124	567 aa		14.26	□□□□□ -0.13
ABCD4-223	ENST00000555904	INF2	Q27J81	1249 aa		14.26	□□□□□ -0.13
ABCD4-223	ENST00000555904	FOXD4L5	Q5VV16	416 aa	Predicted RBP	14.26	□□□□□ -0.13
ABCD4-223	ENST00000555904	PCNX4	Q63HM2	1172 aa		14.26	□□□□□ -0.13
ABCD4-223	ENST00000555904	NEK8	Q86SG6	692 aa		14.26	□□□□□ -0.13
ABCD4-223	ENST00000555904	MSL3	Q8N5Y2	521 aa	Known RBP	14.26	□□□□□ -0.13
ABCD4-223	ENST00000555904	RAET1E	Q8TD07	263 aa		14.26	□□□□□ -0.13
ABCD4-223	ENST00000555904	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	14.26	□□□□□ -0.13
ABCD4-223	ENST00000555904	MAML3	Q96JK9	1138 aa		14.26	□□□□□ -0.13
ABCD4-223	ENST00000555904	CHMP5	Q9NZZ3	219 aa		14.26	□□□□□ -0.13
ABCD4-223	ENST00000555904	TRIM17	Q9Y577	477 aa		14.26	□□□□□ -0.13
ABCD4-223	ENST00000555904	FRMPD4	Q14CM0	1322 aa		14.25	□□□□□ -0.13
ABCD4-223	ENST00000555904	RPTOR	Q8N122	1335 aa		14.25	□□□□□ -0.13
ABCD4-223	ENST00000555904	SOWAHB	A6NEL2	793 aa		14.25	□□□□□ -0.13
ABCD4-223	ENST00000555904	KIF28P	B7ZC32	967 aa		14.25	□□□□□ -0.13
ABCD4-223	ENST00000555904	STAM2	O75886	525 aa		14.25	□□□□□ -0.13
ABCD4-223	ENST00000555904	F13A1	P00488	732 aa		14.25	□□□□□ -0.13
ABCD4-223	ENST00000555904	HSPA8	P11142	646 aa	Known RBP	14.25	□□□□□ -0.13
ABCD4-223	ENST00000555904	MYCL	P12524	364 aa	Predicted RBP	14.25	□□□□□ -0.13
ABCD4-223	ENST00000555904	TRAPPC10	P48553	1259 aa		14.25	□□□□□ -0.13
ABCD4-223	ENST00000555904	USP11	P51784	963 aa		14.25	□□□□□ -0.13
ABCD4-223	ENST00000555904	LBX1	P52954	281 aa		14.25	□□□□□ -0.13
ABCD4-223	ENST00000555904	UBXN2A	P68543	259 aa		14.25	□□□□□ -0.13
ABCD4-223	ENST00000555904	STXBP2	Q15833	593 aa		14.25	□□□□□ -0.13
ABCD4-223	ENST00000555904	RILPL1	Q5EBL4	403 aa		14.25	□□□□□ -0.13
ABCD4-223	ENST00000555904	USP6NL	Q92738	828 aa		14.25	□□□□□ -0.13
ABCD4-223	ENST00000555904	TNFRSF25	Q93038	417 aa		14.25	□□□□□ -0.13
ABCD4-223	ENST00000555904	PURB	Q96QR8	312 aa	Known RBP	14.25	□□□□□ -0.13
ABCD4-223	ENST00000555904	PDCD2L	Q9BRP1	358 aa		14.25	□□□□□ -0.13
ABCD4-223	ENST00000555904	GJD2	Q9UKL4	321 aa		14.25	□□□□□ -0.13
ABCD4-223	ENST00000555904	CNPY2	Q9Y2B0	182 aa		14.25	□□□□□ -0.13
ABCD4-223	ENST00000555904	SYNGAP1	Q96PV0	1343 aa		14.24	□□□□□ -0.13
ABCD4-223	ENST00000555904	ADAMTS3	O15072	1205 aa		14.24	□□□□□ -0.13
ABCD4-223	ENST00000555904	BRD1	O95696	1058 aa		14.24	□□□□□ -0.13
ABCD4-223	ENST00000555904	NR3C2	P08235	984 aa		14.24	□□□□□ -0.13
ABCD4-223	ENST00000555904	GCFC2	P16383	781 aa	Known RBP	14.24	□□□□□ -0.13
ABCD4-223	ENST00000555904	DDIT3	P35638	169 aa		14.24	□□□□□ -0.13
ABCD4-223	ENST00000555904	REST	Q13127	1097 aa		14.24	□□□□□ -0.13
ABCD4-223	ENST00000555904	IRF5	Q13568	498 aa		14.24	□□□□□ -0.13
ABCD4-223	ENST00000555904	PKP1	Q13835	747 aa		14.24	□□□□□ -0.13
ABCD4-223	ENST00000555904	LETM2	Q2VYF4	491 aa		14.24	□□□□□ -0.13
ABCD4-223	ENST00000555904	GNPTAB	Q3T906	1256 aa		14.24	□□□□□ -0.13
ABCD4-223	ENST00000555904	MFSD14C	Q5VZR4	134 aa		14.24	□□□□□ -0.13
ABCD4-223	ENST00000555904	OLFML2B	Q68BL8	750 aa		14.24	□□□□□ -0.13
ABCD4-223	ENST00000555904	ARMCX2	Q7L311	632 aa		14.24	□□□□□ -0.13
ABCD4-223	ENST00000555904	OTOP1	Q7RTM1	612 aa		14.24	□□□□□ -0.13
ABCD4-223	ENST00000555904	GABRQ	Q9UN88	632 aa		14.24	□□□□□ -0.13
ABCD4-223	ENST00000555904	CCNT1	O60563	726 aa	Known RBP	14.23	□□□□□ -0.13
ABCD4-223	ENST00000555904	EIF3J	O75822	258 aa	Known RBP	14.23	□□□□□ -0.13
ABCD4-223	ENST00000555904	CYP3A4	P08684	503 aa		14.23	□□□□□ -0.13
ABCD4-223	ENST00000555904	ATP2B1	P20020	1258 aa		14.23	□□□□□ -0.13
ABCD4-223	ENST00000555904	SET	Q01105	290 aa	Predicted RBP	14.23	□□□□□ -0.13
ABCD4-223	ENST00000555904	MAMDC4	Q6UXC1	1216 aa		14.23	□□□□□ -0.13
ABCD4-223	ENST00000555904	NLRX1	Q86UT6	975 aa		14.23	□□□□□ -0.13
ABCD4-223	ENST00000555904	VSIG10L	Q86VR7	867 aa		14.23	□□□□□ -0.13
ABCD4-223	ENST00000555904	NPLOC4	Q8TAT6	608 aa		14.23	□□□□□ -0.13
ABCD4-223	ENST00000555904	ZNF396	Q96N95	335 aa	Predicted RBP	14.23	□□□□□ -0.13
ABCD4-223	ENST00000555904	TINF2	Q9BSI4	451 aa		14.23	□□□□□ -0.13
ABCD4-223	ENST00000555904	ASTN1	O14525	1302 aa		14.22	□□□□□ -0.13
ABCD4-223	ENST00000555904	FAM205C	A6NFA0	338 aa		14.22	□□□□□ -0.13
ABCD4-223	ENST00000555904	ADCY3	O60266	1144 aa		14.22	□□□□□ -0.13
ABCD4-223	ENST00000555904	EDNRB	P24530	442 aa		14.22	□□□□□ -0.13
ABCD4-223	ENST00000555904	ORC2	Q13416	577 aa	Predicted RBP	14.22	□□□□□ -0.13
ABCD4-223	ENST00000555904	CEP55	Q53EZ4	464 aa		14.22	□□□□□ -0.13
ABCD4-223	ENST00000555904	EARS2	Q5JPH6	523 aa	Known RBP	14.22	□□□□□ -0.13

Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms