RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 TOMM22Q9NS69 142 aa19.93■□□□□ 0.78
VPS29-204ENST00000548259 NMT2O60551 498 aa19.92■□□□□ 0.78
VPS29-204ENST00000548259 GPR37L1O60883 481 aa19.92■□□□□ 0.78
VPS29-204ENST00000548259 EFCAB14O75071 495 aa19.92■□□□□ 0.78
VPS29-204ENST00000548259 TOP1P11387 765 aaKnown RBP19.92■□□□□ 0.78
VPS29-204ENST00000548259 SLC16A2P36021 539 aa19.92■□□□□ 0.78
VPS29-204ENST00000548259 KRT40Q6A162 431 aa19.92■□□□□ 0.78
VPS29-204ENST00000548259 CRBNQ96SW2 442 aa19.92■□□□□ 0.78
VPS29-204ENST00000548259 LRRC37A2A6NM11 1700 aa19.92■□□□□ 0.78
VPS29-204ENST00000548259 GBF1Q92538 1859 aa19.92■□□□□ 0.78
VPS29-204ENST00000548259 ORC4O43929 436 aa19.91■□□□□ 0.78
VPS29-204ENST00000548259 CTDSPL2Q05D32 466 aa19.91■□□□□ 0.78
VPS29-204ENST00000548259 SLC30A10Q6XR72 485 aa19.91■□□□□ 0.78
VPS29-204ENST00000548259 GPCPD1Q9NPB8 672 aa19.91■□□□□ 0.78
VPS29-204ENST00000548259 ANAPC4Q9UJX5 808 aa19.91■□□□□ 0.78
VPS29-204ENST00000548259 TCF20Q9UGU0 1960 aaKnown RBP19.91■□□□□ 0.78
VPS29-204ENST00000548259 SELPP16109 830 aa19.9■□□□□ 0.78
VPS29-204ENST00000548259 EDNRBP24530 442 aa19.9■□□□□ 0.78
VPS29-204ENST00000548259 NOVP48745 357 aa19.9■□□□□ 0.78
VPS29-204ENST00000548259 RPS6P62753 249 aaKnown RBP19.9■□□□□ 0.78
VPS29-204ENST00000548259 TTBK2Q6IQ55 1244 aa19.9■□□□□ 0.78
VPS29-204ENST00000548259 CNKSR3Q6P9H4 555 aa19.9■□□□□ 0.78
VPS29-204ENST00000548259 RCAN3Q9UKA8 241 aa19.9■□□□□ 0.78
VPS29-204ENST00000548259 ABHD14A-ACY1A0A1B0GW23 586 aa19.89■□□□□ 0.77
VPS29-204ENST00000548259 WDR5P61964 334 aaKnown RBP19.89■□□□□ 0.77
VPS29-204ENST00000548259 FRMPD2Q68DX3 1309 aaPredicted RBP19.89■□□□□ 0.77
VPS29-204ENST00000548259 LRRC8DQ7L1W4 858 aa19.89■□□□□ 0.77
VPS29-204ENST00000548259 WDR19Q8NEZ3 1342 aa19.89■□□□□ 0.77
VPS29-204ENST00000548259 TGS1Q96RS0 853 aaKnown RBP19.89■□□□□ 0.77
VPS29-204ENST00000548259 RAD9AQ99638 391 aa19.89■□□□□ 0.77
VPS29-204ENST00000548259 MAF1Q9H063 256 aa19.89■□□□□ 0.77
VPS29-204ENST00000548259 CASTP20810 708 aaKnown RBP19.88■□□□□ 0.77
VPS29-204ENST00000548259 RASGRP2Q7LDG7 609 aa19.88■□□□□ 0.77
VPS29-204ENST00000548259 SESTD1Q86VW0 696 aa19.88■□□□□ 0.77
VPS29-204ENST00000548259 CLEC4DQ8WXI8 215 aa19.88■□□□□ 0.77
VPS29-204ENST00000548259 ZBTB47Q9UFB7 747 aaPredicted RBP19.88■□□□□ 0.77
VPS29-204ENST00000548259 PI4K2BG5E9Z4 385 aa19.87■□□□□ 0.77
VPS29-204ENST00000548259 LPXNO60711 386 aa19.87■□□□□ 0.77
VPS29-204ENST00000548259 ARHGEF15O94989 841 aa19.87■□□□□ 0.77
VPS29-204ENST00000548259 GH1P01241 217 aa19.87■□□□□ 0.77
VPS29-204ENST00000548259 IKBKEQ14164 716 aa19.87■□□□□ 0.77
VPS29-204ENST00000548259 RRP12Q5JTH9 1297 aaKnown RBP19.87■□□□□ 0.77
VPS29-204ENST00000548259 C7orf31Q8N865 590 aa19.87■□□□□ 0.77
VPS29-204ENST00000548259 RGS22Q8NE09 1264 aa19.87■□□□□ 0.77
VPS29-204ENST00000548259 GDPD5Q8WTR4 605 aa19.87■□□□□ 0.77
VPS29-204ENST00000548259 COPS5Q92905 334 aa19.87■□□□□ 0.77
VPS29-204ENST00000548259 TMEM47Q9BQJ4 181 aa19.87■□□□□ 0.77
VPS29-204ENST00000548259 KATNAL1Q9BW62 490 aa19.87■□□□□ 0.77
VPS29-204ENST00000548259 INCENPQ9NQS7 918 aa19.87■□□□□ 0.77
VPS29-204ENST00000548259 TCP11L1Q9NUJ3 509 aa19.87■□□□□ 0.77
VPS29-204ENST00000548259 REV3LO60673 3130 aa19.87■□□□□ 0.77
VPS29-204ENST00000548259 GJB5O95377 273 aa19.86■□□□□ 0.77
VPS29-204ENST00000548259 DGKDQ16760 1214 aa19.86■□□□□ 0.77
VPS29-204ENST00000548259 PPP1R13LQ8WUF5 828 aa19.86■□□□□ 0.77
VPS29-204ENST00000548259 AFG1LQ8WV93 481 aa19.86■□□□□ 0.77
VPS29-204ENST00000548259 TTC14Q96N46 770 aa19.86■□□□□ 0.77
VPS29-204ENST00000548259 UBE2ZQ9H832 354 aaPredicted RBP19.86■□□□□ 0.77
VPS29-204ENST00000548259 CTNNA3Q9UI47 895 aa19.86■□□□□ 0.77
VPS29-204ENST00000548259 MMP3P08254 477 aa19.85■□□□□ 0.77
VPS29-204ENST00000548259 PDHBP11177 359 aa19.85■□□□□ 0.77
VPS29-204ENST00000548259 ERVK-21P61565 698 aa19.85■□□□□ 0.77
VPS29-204ENST00000548259 RBL2Q08999 1139 aa19.85■□□□□ 0.77
VPS29-204ENST00000548259 ALX1Q15699 326 aa19.85■□□□□ 0.77
VPS29-204ENST00000548259 GPATCH4Q5T3I0 446 aaKnown RBP19.85■□□□□ 0.77
VPS29-204ENST00000548259 GDF6Q6KF10 455 aaPredicted RBP19.85■□□□□ 0.77
VPS29-204ENST00000548259 PI4K2BQ8TCG2 481 aa19.85■□□□□ 0.77
VPS29-204ENST00000548259 MTUS1Q9ULD2 1270 aa19.85■□□□□ 0.77
VPS29-204ENST00000548259 SCN10AQ9Y5Y9 1956 aa19.84■□□□□ 0.77
VPS29-204ENST00000548259 LCHNA4D1U4 455 aa19.84■□□□□ 0.77
VPS29-204ENST00000548259 FAM86C2PA6NEL3 165 aa19.84■□□□□ 0.77
VPS29-204ENST00000548259 PRR33A8MZF0 331 aa19.84■□□□□ 0.77
VPS29-204ENST00000548259 CXCL10P02778 98 aa19.84■□□□□ 0.77
VPS29-204ENST00000548259 FGRP09769 529 aa19.84■□□□□ 0.77
VPS29-204ENST00000548259 PCP11498 1178 aaKnown RBP19.84■□□□□ 0.77
VPS29-204ENST00000548259 ALADP13716 330 aa19.84■□□□□ 0.77
VPS29-204ENST00000548259 SSTR3P32745 418 aaPredicted RBP19.84■□□□□ 0.77
VPS29-204ENST00000548259 ZNF543Q08ER8 600 aa19.84■□□□□ 0.77
VPS29-204ENST00000548259 STXBP2Q15833 593 aa19.84■□□□□ 0.77
VPS29-204ENST00000548259 CSPP1Q1MSJ5 1256 aa19.84■□□□□ 0.77
VPS29-204ENST00000548259 PUS10Q3MIT2 529 aaKnown RBP19.84■□□□□ 0.77
VPS29-204ENST00000548259 GJD3Q8N144 294 aa19.84■□□□□ 0.77
VPS29-204ENST00000548259 NSUN6Q8TEA1 469 aaKnown RBP19.84■□□□□ 0.77
VPS29-204ENST00000548259 SUGCTQ9HAC7 445 aa19.84■□□□□ 0.77
VPS29-204ENST00000548259 INSL6Q9Y581 213 aa19.84■□□□□ 0.77
VPS29-204ENST00000548259 PIEZO1Q92508 2521 aa19.84■□□□□ 0.77
VPS29-204ENST00000548259 CKBP12277 381 aa19.83■□□□□ 0.77
VPS29-204ENST00000548259 MX1P20591 662 aa19.83■□□□□ 0.77
VPS29-204ENST00000548259 DEFB103AP81534 67 aa19.83■□□□□ 0.77
VPS29-204ENST00000548259 PTPROQ16827 1216 aa19.83■□□□□ 0.77
VPS29-204ENST00000548259 LEXMQ3ZCV2 418 aa19.83■□□□□ 0.77
VPS29-204ENST00000548259 USH1GQ495M9 461 aa19.83■□□□□ 0.77
VPS29-204ENST00000548259 CCDC62Q6P9F0 684 aa19.83■□□□□ 0.77
VPS29-204ENST00000548259 SEPT14Q6ZU15 432 aa19.83■□□□□ 0.77
VPS29-204ENST00000548259 CHST3Q7LGC8 479 aa19.83■□□□□ 0.77
VPS29-204ENST00000548259 MCF2L2Q86YR7 1114 aa19.83■□□□□ 0.77
VPS29-204ENST00000548259 MIER1Q8N108 512 aa19.83■□□□□ 0.77
VPS29-204ENST00000548259 IWS1Q96ST2 819 aa19.83■□□□□ 0.77
VPS29-204ENST00000548259 HELLSQ9NRZ9 838 aa19.83■□□□□ 0.77
VPS29-204ENST00000548259 GTF2IRD1Q9UHL9 959 aa19.83■□□□□ 0.77
VPS29-204ENST00000548259 FAM50BQ9Y247 325 aa19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms