RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 TDHQ8IZJ6 230 aa10.86□□□□□ -0.67
HDAC3-215ENST00000519474 NSUN6Q8TEA1 469 aaKnown RBP10.86□□□□□ -0.67
HDAC3-215ENST00000519474 LRCH3Q96II8 777 aa10.86□□□□□ -0.67
HDAC3-215ENST00000519474 GLT1D1Q96MS3 346 aa10.86□□□□□ -0.67
HDAC3-215ENST00000519474 LBHD1Q9BQE6 289 aaPredicted RBP10.86□□□□□ -0.67
HDAC3-215ENST00000519474 MYL10Q9BUA6 226 aa10.86□□□□□ -0.67
HDAC3-215ENST00000519474 PRKAG2Q9UGJ0 569 aa10.86□□□□□ -0.67
HDAC3-215ENST00000519474 LCTP09848 1927 aa10.86□□□□□ -0.67
HDAC3-215ENST00000519474 B4DLN1 442 aa10.85□□□□□ -0.67
HDAC3-215ENST00000519474 SH2B2O14492 632 aaPredicted RBP10.85□□□□□ -0.67
HDAC3-215ENST00000519474 PQBP1O60828 265 aaKnown RBP10.85□□□□□ -0.67
HDAC3-215ENST00000519474 NR3C2P08235 984 aa10.85□□□□□ -0.67
HDAC3-215ENST00000519474 CLTBP09497 229 aa10.85□□□□□ -0.67
HDAC3-215ENST00000519474 SMARCA1P28370 1054 aa10.85□□□□□ -0.67
HDAC3-215ENST00000519474 MRPL12P52815 198 aaKnown RBP10.85□□□□□ -0.67
HDAC3-215ENST00000519474 ADCK5Q3MIX3 580 aa10.85□□□□□ -0.67
HDAC3-215ENST00000519474 LRIT3Q3SXY7 679 aa10.85□□□□□ -0.67
HDAC3-215ENST00000519474 CASC1Q6TDU7 716 aa10.85□□□□□ -0.67
HDAC3-215ENST00000519474 ZNF654Q8IZM8 581 aa10.85□□□□□ -0.67
HDAC3-215ENST00000519474 SRBD1Q8N5C6 995 aaKnown RBP10.85□□□□□ -0.67
HDAC3-215ENST00000519474 SAMD3Q8N6K7 520 aa10.85□□□□□ -0.67
HDAC3-215ENST00000519474 COPS5Q92905 334 aa10.85□□□□□ -0.67
HDAC3-215ENST00000519474 NEK1Q96PY6 1258 aa10.85□□□□□ -0.67
HDAC3-215ENST00000519474 IWS1Q96ST2 819 aa10.85□□□□□ -0.67
HDAC3-215ENST00000519474 RMDN3Q96TC7 470 aa10.85□□□□□ -0.67
HDAC3-215ENST00000519474 LRRC2Q9BYS8 371 aa10.85□□□□□ -0.67
HDAC3-215ENST00000519474 PRDM5Q9NQX1 630 aaPredicted RBP10.85□□□□□ -0.67
HDAC3-215ENST00000519474 TMEM39AQ9NV64 488 aa10.85□□□□□ -0.67
HDAC3-215ENST00000519474 MAP3K20Q9NYL2 800 aaKnown RBP10.85□□□□□ -0.67
HDAC3-215ENST00000519474 BAZ2BQ9UIF8 2168 aaKnown RBP10.84□□□□□ -0.67
HDAC3-215ENST00000519474 A0A0U1RQG5 324 aaPredicted RBP10.84□□□□□ -0.67
HDAC3-215ENST00000519474 NKRFO15226 690 aaKnown RBP eCLIP10.84□□□□□ -0.67
HDAC3-215ENST00000519474 ZEB2O60315 1214 aa10.84□□□□□ -0.67
HDAC3-215ENST00000519474 CDC45O75419 566 aa10.84□□□□□ -0.67
HDAC3-215ENST00000519474 CABYRO75952 493 aa10.84□□□□□ -0.67
HDAC3-215ENST00000519474 ARIH2O95376 493 aa10.84□□□□□ -0.67
HDAC3-215ENST00000519474 CD4P01730 458 aa10.84□□□□□ -0.67
HDAC3-215ENST00000519474 TXNP10599 105 aaKnown RBP10.84□□□□□ -0.67
HDAC3-215ENST00000519474 ITGA7Q13683 1181 aa10.84□□□□□ -0.67
HDAC3-215ENST00000519474 SHHQ15465 462 aa10.84□□□□□ -0.67
HDAC3-215ENST00000519474 STXBP2Q15833 593 aa10.84□□□□□ -0.67
HDAC3-215ENST00000519474 LY6KQ17RY6 165 aa10.84□□□□□ -0.67
HDAC3-215ENST00000519474 ARHGEF16Q5VV41 709 aa10.84□□□□□ -0.67
HDAC3-215ENST00000519474 SEPT14Q6ZU15 432 aa10.84□□□□□ -0.67
HDAC3-215ENST00000519474 HOMER1Q86YM7 354 aa10.84□□□□□ -0.67
HDAC3-215ENST00000519474 FANCBQ8NB91 859 aa10.84□□□□□ -0.67
HDAC3-215ENST00000519474 SCFD2Q8WU76 684 aa10.84□□□□□ -0.67
HDAC3-215ENST00000519474 PIBF1Q8WXW3 757 aa10.84□□□□□ -0.67
HDAC3-215ENST00000519474 KCNB2Q92953 911 aa10.84□□□□□ -0.67
HDAC3-215ENST00000519474 PXMP2Q9NR77 195 aa10.84□□□□□ -0.67
HDAC3-215ENST00000519474 CEP290O15078 2479 aa10.84□□□□□ -0.67
HDAC3-215ENST00000519474 CCDC69A6NI79 296 aa10.83□□□□□ -0.68
HDAC3-215ENST00000519474 A6NJR5 290 aa10.83□□□□□ -0.68
HDAC3-215ENST00000519474 EIF3JO75822 258 aaKnown RBP10.83□□□□□ -0.68
HDAC3-215ENST00000519474 RGS20O76081 388 aa10.83□□□□□ -0.68
HDAC3-215ENST00000519474 DDAH1O94760 285 aa10.83□□□□□ -0.68
HDAC3-215ENST00000519474 TIMP1P01033 207 aa10.83□□□□□ -0.68
HDAC3-215ENST00000519474 RAG1P15918 1043 aa10.83□□□□□ -0.68
HDAC3-215ENST00000519474 EIF2AK2P19525 551 aaKnown RBP10.83□□□□□ -0.68
HDAC3-215ENST00000519474 RXRAP19793 462 aa10.83□□□□□ -0.68
HDAC3-215ENST00000519474 HOXA13P31271 388 aaPredicted RBP10.83□□□□□ -0.68
HDAC3-215ENST00000519474 EPHB4P54760 987 aa10.83□□□□□ -0.68
HDAC3-215ENST00000519474 PSMC6P62333 389 aa10.83□□□□□ -0.68
HDAC3-215ENST00000519474 C9orf50Q5SZB4 431 aa10.83□□□□□ -0.68
HDAC3-215ENST00000519474 RNF20Q5VTR2 975 aa10.83□□□□□ -0.68
HDAC3-215ENST00000519474 NFXL1Q6ZNB6 911 aa10.83□□□□□ -0.68
HDAC3-215ENST00000519474 DHX32Q7L7V1 743 aaKnown RBP10.83□□□□□ -0.68
HDAC3-215ENST00000519474 VSIG10LQ86VR7 867 aa10.83□□□□□ -0.68
HDAC3-215ENST00000519474 SGMS1Q86VZ5 419 aa10.83□□□□□ -0.68
HDAC3-215ENST00000519474 FAM126BQ8IXS8 530 aa10.83□□□□□ -0.68
HDAC3-215ENST00000519474 CMTR1Q8N1G2 835 aaKnown RBP10.83□□□□□ -0.68
HDAC3-215ENST00000519474 OR6J1Q8NGC5 347 aa10.83□□□□□ -0.68
HDAC3-215ENST00000519474 MPHOSPH6Q99547 160 aaKnown RBP10.83□□□□□ -0.68
HDAC3-215ENST00000519474 LZTS2Q9BRK4 669 aa10.83□□□□□ -0.68
HDAC3-215ENST00000519474 SPZ1Q9BXG8 430 aa10.83□□□□□ -0.68
HDAC3-215ENST00000519474 DDX41Q9UJV9 622 aaKnown RBP10.83□□□□□ -0.68
HDAC3-215ENST00000519474 TBX21Q9UL17 535 aa10.83□□□□□ -0.68
HDAC3-215ENST00000519474 GCOM1H8Y6P7 765 aaPredicted RBP10.82□□□□□ -0.68
HDAC3-215ENST00000519474 PLEKHA8P1O95397 391 aa10.82□□□□□ -0.68
HDAC3-215ENST00000519474 POLR2MP0CAP2 368 aa10.82□□□□□ -0.68
HDAC3-215ENST00000519474 KIF5BP33176 963 aa10.82□□□□□ -0.68
HDAC3-215ENST00000519474 GNAQP50148 359 aa10.82□□□□□ -0.68
HDAC3-215ENST00000519474 PURAQ00577 322 aaKnown RBP10.82□□□□□ -0.68
HDAC3-215ENST00000519474 TRAF1Q13077 416 aa10.82□□□□□ -0.68
HDAC3-215ENST00000519474 TTLL4Q14679 1199 aa10.82□□□□□ -0.68
HDAC3-215ENST00000519474 C16orf59Q7L2K0 433 aa10.82□□□□□ -0.68
HDAC3-215ENST00000519474 RAB11FIP4Q86YS3 637 aa10.82□□□□□ -0.68
HDAC3-215ENST00000519474 CCDC82Q8N4S0 544 aa10.82□□□□□ -0.68
HDAC3-215ENST00000519474 CTCFLQ8NI51 663 aaPredicted RBP10.82□□□□□ -0.68
HDAC3-215ENST00000519474 ZFP91Q96JP5 570 aaPredicted RBP10.82□□□□□ -0.68
HDAC3-215ENST00000519474 TCEANC2Q96MN5 208 aa10.82□□□□□ -0.68
HDAC3-215ENST00000519474 PDCD2LQ9BRP1 358 aa10.82□□□□□ -0.68
HDAC3-215ENST00000519474 POLR3EQ9NVU0 708 aa10.82□□□□□ -0.68
HDAC3-215ENST00000519474 BCCIPQ9P287 314 aaKnown RBP eCLIP10.82□□□□□ -0.68
HDAC3-215ENST00000519474 BRPF3Q9ULD4 1205 aa10.82□□□□□ -0.68
HDAC3-215ENST00000519474 TRIOBPQ9H2D6 2365 aa10.81□□□□□ -0.68
HDAC3-215ENST00000519474 MEIS2O14770 477 aa10.81□□□□□ -0.68
HDAC3-215ENST00000519474 MYL3P08590 195 aa10.81□□□□□ -0.68
HDAC3-215ENST00000519474 CALM1P0DP23 149 aa10.81□□□□□ -0.68
HDAC3-215ENST00000519474 CALM2P0DP24 149 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms