RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 FCF1Q9Y324 198 aaKnown RBP7.94□□□□□ -1.14
VPS52-219ENST00000493379 PFASO15067 1338 aa7.94□□□□□ -1.14
VPS52-219ENST00000493379 DOCK1Q14185 1865 aa7.94□□□□□ -1.14
VPS52-219ENST00000493379 PTPRZ1P23471 2315 aaPredicted RBP7.94□□□□□ -1.14
VPS52-219ENST00000493379 GREB1LQ9C091 1923 aaPredicted RBP7.93□□□□□ -1.14
VPS52-219ENST00000493379 BAZ2AQ9UIF9 1905 aaKnown RBP7.93□□□□□ -1.14
VPS52-219ENST00000493379 USP17L15C9J2P7 530 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 USP17L13C9JLJ4 530 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 USP17L11C9JVI0 530 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 USP17L18D6R9N7 530 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 USP17L22D6RA61 530 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 USP17L17D6RBQ6 530 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 USP17L19D6RCP7 530 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 USP17L20D6RJB6 530 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 PRDM1O75626 825 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 TTLL1O95922 423 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 ICA1Q05084 483 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 USP17L24Q0WX57 530 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 PTK7Q13308 1070 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 PABPC4Q13310 644 aaKnown RBP eCLIP7.93□□□□□ -1.14
VPS52-219ENST00000493379 RAB3GAP1Q15042 981 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 CCDC178Q5BJE1 867 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 TREML2Q5T2D2 321 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 CASC1Q6TDU7 716 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 BPHLQ86WA6 291 aaPredicted RBP7.93□□□□□ -1.14
VPS52-219ENST00000493379 ZNF511Q8NB15 262 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 GTF3C2Q8WUA4 911 aaPredicted RBP7.93□□□□□ -1.14
VPS52-219ENST00000493379 ESR2Q92731 530 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 CEP95Q96GE4 821 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 KRT23Q9C075 422 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 C11orf49Q9H6J7 331 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 SH2D4AQ9H788 454 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 CNNM2Q9H8M5 875 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 ARHGEF10LQ9HCE6 1279 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 PAK6Q9NQU5 681 aaPredicted RBP7.93□□□□□ -1.14
VPS52-219ENST00000493379 ZSWIM5Q9P217 1185 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 CPA4Q9UI42 421 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 RALYQ9UKM9 306 aaKnown RBP7.93□□□□□ -1.14
VPS52-219ENST00000493379 MGAMO43451 1857 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 NAV1Q8NEY1 1877 aa7.93□□□□□ -1.14
VPS52-219ENST00000493379 LTBP2Q14767 1821 aa7.92□□□□□ -1.14
VPS52-219ENST00000493379 ANKRD11Q6UB99 2663 aaPredicted RBP7.92□□□□□ -1.14
VPS52-219ENST00000493379 F5H6K3 240 aa7.92□□□□□ -1.14
VPS52-219ENST00000493379 WDR46O15213 610 aaKnown RBP7.92□□□□□ -1.14
VPS52-219ENST00000493379 TSPY3P0CV98 308 aa7.92□□□□□ -1.14
VPS52-219ENST00000493379 TSPY8P0CW00 308 aa7.92□□□□□ -1.14
VPS52-219ENST00000493379 SNHG28P0DPA3 235 aa7.92□□□□□ -1.14
VPS52-219ENST00000493379 VCAM1P19320 739 aa7.92□□□□□ -1.14
VPS52-219ENST00000493379 HSPA4P34932 840 aa7.92□□□□□ -1.14
VPS52-219ENST00000493379 GCLCP48506 637 aaPredicted RBP7.92□□□□□ -1.14
VPS52-219ENST00000493379 SMAD3P84022 425 aaKnown RBP7.92□□□□□ -1.14
VPS52-219ENST00000493379 KLRC3Q07444 240 aa7.92□□□□□ -1.14
VPS52-219ENST00000493379 COG2Q14746 738 aa7.92□□□□□ -1.14
VPS52-219ENST00000493379 SEC23AQ15436 765 aa7.92□□□□□ -1.14
VPS52-219ENST00000493379 LRRC26Q2I0M4 334 aa7.92□□□□□ -1.14
VPS52-219ENST00000493379 LINC01559Q495D7 138 aa7.92□□□□□ -1.14
VPS52-219ENST00000493379 C4orf48Q5BLP8 95 aa7.92□□□□□ -1.14
VPS52-219ENST00000493379 KIAA1211Q6ZU35 1233 aa7.92□□□□□ -1.14
VPS52-219ENST00000493379 FBXL16Q8N461 479 aa7.92□□□□□ -1.14
VPS52-219ENST00000493379 FOXJ1Q92949 421 aa7.92□□□□□ -1.14
VPS52-219ENST00000493379 GMCL1Q96IK5 515 aa7.92□□□□□ -1.14
VPS52-219ENST00000493379 PARK7Q99497 189 aaKnown RBP7.92□□□□□ -1.14
VPS52-219ENST00000493379 USP26Q9BXU7 913 aa7.92□□□□□ -1.14
VPS52-219ENST00000493379 ASCC2Q9H1I8 757 aaPredicted RBP7.92□□□□□ -1.14
VPS52-219ENST00000493379 HOXC10Q9NYD6 342 aa7.92□□□□□ -1.14
VPS52-219ENST00000493379 TMOD4Q9NZQ9 345 aa7.92□□□□□ -1.14
VPS52-219ENST00000493379 MORF4L1Q9UBU8 362 aa7.92□□□□□ -1.14
VPS52-219ENST00000493379 CLIP2Q9UDT6 1046 aa7.92□□□□□ -1.14
VPS52-219ENST00000493379 RBM8AQ9Y5S9 174 aaKnown RBP7.92□□□□□ -1.14
VPS52-219ENST00000493379 ZNF318Q5VUA4 2279 aa7.92□□□□□ -1.14
VPS52-219ENST00000493379 FASNP49327 2511 aaKnown RBP7.91□□□□□ -1.14
VPS52-219ENST00000493379 TSPY2A6NKD2 308 aa7.91□□□□□ -1.14
VPS52-219ENST00000493379 E7EWF7 191 aa7.91□□□□□ -1.14
VPS52-219ENST00000493379 MPHOSPH10O00566 681 aaKnown RBP7.91□□□□□ -1.14
VPS52-219ENST00000493379 SLC27A2O14975 620 aa7.91□□□□□ -1.14
VPS52-219ENST00000493379 ADCY3O60266 1144 aa7.91□□□□□ -1.14
VPS52-219ENST00000493379 RGS20O76081 388 aa7.91□□□□□ -1.14
VPS52-219ENST00000493379 REC8O95072 547 aa7.91□□□□□ -1.14
VPS52-219ENST00000493379 HAND2P61296 217 aa7.91□□□□□ -1.14
VPS52-219ENST00000493379 EXOSC10Q01780 885 aaKnown RBP7.91□□□□□ -1.14
VPS52-219ENST00000493379 AGERQ15109 404 aa7.91□□□□□ -1.14
VPS52-219ENST00000493379 FAM110CQ1W6H9 321 aa7.91□□□□□ -1.14
VPS52-219ENST00000493379 EML3Q32P44 896 aa7.91□□□□□ -1.14
VPS52-219ENST00000493379 FAM47AQ5JRC9 791 aa7.91□□□□□ -1.14
VPS52-219ENST00000493379 CREB3L3Q68CJ9 461 aa7.91□□□□□ -1.14
VPS52-219ENST00000493379 BTNL9Q6UXG8 535 aa7.91□□□□□ -1.14
VPS52-219ENST00000493379 STOX1Q6ZVD7 989 aa7.91□□□□□ -1.14
VPS52-219ENST00000493379 IGDCC4Q8TDY8 1250 aa7.91□□□□□ -1.14
VPS52-219ENST00000493379 RBPJLQ9UBG7 517 aa7.91□□□□□ -1.14
VPS52-219ENST00000493379 RABGAP1Q9Y3P9 1069 aa7.91□□□□□ -1.14
VPS52-219ENST00000493379 TAF6LQ9Y6J9 622 aa7.91□□□□□ -1.14
VPS52-219ENST00000493379 NEDD4P46934 1319 aa7.91□□□□□ -1.14
VPS52-219ENST00000493379 PTPRFP10586 1907 aa7.9□□□□□ -1.14
VPS52-219ENST00000493379 WDR19Q8NEZ3 1342 aa7.9□□□□□ -1.14
VPS52-219ENST00000493379 PRR33A8MZF0 331 aa7.9□□□□□ -1.14
VPS52-219ENST00000493379 ATP2A1O14983 1001 aa7.9□□□□□ -1.14
VPS52-219ENST00000493379 RANBP6O60518 1105 aaKnown RBP7.9□□□□□ -1.14
VPS52-219ENST00000493379 NMT2O60551 498 aa7.9□□□□□ -1.14
VPS52-219ENST00000493379 EIF5BO60841 1220 aaKnown RBP7.9□□□□□ -1.14
VPS52-219ENST00000493379 NDUFB10O96000 172 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms