RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 ADCY7P51828 1080 aa22.68■■□□□ 1.22
LIME1-205ENST00000480139 MTFR1Q15390 333 aa22.68■■□□□ 1.22
LIME1-205ENST00000480139 USP17L6PQ6QN14 398 aa22.68■■□□□ 1.22
LIME1-205ENST00000480139 CCDC83Q8IWF9 413 aa22.68■■□□□ 1.22
LIME1-205ENST00000480139 SMARCC2Q8TAQ2 1214 aa22.68■■□□□ 1.22
LIME1-205ENST00000480139 TMX3Q96JJ7 454 aa22.68■■□□□ 1.22
LIME1-205ENST00000480139 PAK6Q9NQU5 681 aaPredicted RBP22.68■■□□□ 1.22
LIME1-205ENST00000480139 PXMP2Q9NR77 195 aa22.68■■□□□ 1.22
LIME1-205ENST00000480139 FDPSP14324 419 aaKnown RBP22.67■■□□□ 1.22
LIME1-205ENST00000480139 GNA11P29992 359 aa22.67■■□□□ 1.22
LIME1-205ENST00000480139 KATNBL1Q9H079 304 aa22.67■■□□□ 1.22
LIME1-205ENST00000480139 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.67■■□□□ 1.229e-9■■■■■ 70.5
LIME1-205ENST00000480139 UNC93B1Q9H1C4 597 aa22.67■■□□□ 1.22
LIME1-205ENST00000480139 C6orf50Q9HD87 102 aa22.67■■□□□ 1.22
LIME1-205ENST00000480139 ORC3Q9UBD5 711 aaPredicted RBP22.67■■□□□ 1.22
LIME1-205ENST00000480139 FRMPD3Q5JV73 1810 aa22.66■■□□□ 1.22
LIME1-205ENST00000480139 ZNF865P0CJ78 1059 aaPredicted RBP22.66■■□□□ 1.22
LIME1-205ENST00000480139 ARHGEF16Q5VV41 709 aa22.66■■□□□ 1.22
LIME1-205ENST00000480139 TRPV1Q8NER1 839 aa22.66■■□□□ 1.22
LIME1-205ENST00000480139 SHISA4Q96DD7 197 aa22.66■■□□□ 1.22
LIME1-205ENST00000480139 VTA1Q9NP79 307 aa22.66■■□□□ 1.22
LIME1-205ENST00000480139 VPS54Q9P1Q0 977 aa22.66■■□□□ 1.22
LIME1-205ENST00000480139 CAPN2P17655 700 aa22.65■■□□□ 1.22
LIME1-205ENST00000480139 XBP1P17861 261 aa22.65■■□□□ 1.22
LIME1-205ENST00000480139 CCND3P30281 292 aaPredicted RBP22.65■■□□□ 1.22
LIME1-205ENST00000480139 CLK2P49760 499 aaKnown RBP22.65■■□□□ 1.22
LIME1-205ENST00000480139 PDE4DQ08499 809 aa22.65■■□□□ 1.22
LIME1-205ENST00000480139 ACVR2BQ13705 512 aa22.65■■□□□ 1.22
LIME1-205ENST00000480139 MCTP2Q6DN12 878 aa22.65■■□□□ 1.22
LIME1-205ENST00000480139 FCHSD1Q86WN1 690 aa22.65■■□□□ 1.22
LIME1-205ENST00000480139 BICD2Q8TD16 824 aa22.65■■□□□ 1.22
LIME1-205ENST00000480139 PDCD2LQ9BRP1 358 aa22.65■■□□□ 1.22
LIME1-205ENST00000480139 RNF208Q9H0X6 261 aa22.65■■□□□ 1.22
LIME1-205ENST00000480139 SEPT4O43236 478 aa22.64■■□□□ 1.21
LIME1-205ENST00000480139 JAK2O60674 1132 aa22.64■■□□□ 1.21
LIME1-205ENST00000480139 MSCO60682 206 aa22.64■■□□□ 1.21
LIME1-205ENST00000480139 FOSP01100 380 aaPredicted RBP22.64■■□□□ 1.21
LIME1-205ENST00000480139 GJB1P08034 283 aa22.64■■□□□ 1.21
LIME1-205ENST00000480139 EIF2AK2P19525 551 aaKnown RBP22.64■■□□□ 1.21
LIME1-205ENST00000480139 HMGN5P82970 282 aaKnown RBP22.64■■□□□ 1.21
LIME1-205ENST00000480139 AP3B2Q13367 1082 aa22.64■■□□□ 1.21
LIME1-205ENST00000480139 UBE2SQ16763 222 aa22.64■■□□□ 1.21
LIME1-205ENST00000480139 GALNT17Q6IS24 598 aa22.64■■□□□ 1.21
LIME1-205ENST00000480139 TMEM106CQ9BVX2 250 aa22.64■■□□□ 1.21
LIME1-205ENST00000480139 KIAA1217Q5T5P2 1943 aa22.64■■□□□ 1.21
LIME1-205ENST00000480139 SPDYE3A6NKU9 549 aa22.63■■□□□ 1.21
LIME1-205ENST00000480139 NR3C2P08235 984 aa22.63■■□□□ 1.21
LIME1-205ENST00000480139 PGM5Q15124 567 aa22.63■■□□□ 1.21
LIME1-205ENST00000480139 STXBP2Q15833 593 aa22.63■■□□□ 1.21
LIME1-205ENST00000480139 PRAMEF19Q5SWL8 479 aa22.63■■□□□ 1.21
LIME1-205ENST00000480139 DAGLBQ8NCG7 672 aa22.63■■□□□ 1.21
LIME1-205ENST00000480139 SNX21Q969T3 373 aa22.63■■□□□ 1.21
LIME1-205ENST00000480139 AIFM3Q96NN9 605 aa22.63■■□□□ 1.21
LIME1-205ENST00000480139 AKR1A1P14550 325 aa22.62■■□□□ 1.21
LIME1-205ENST00000480139 NLRP5P59047 1200 aa22.62■■□□□ 1.21
LIME1-205ENST00000480139 XRRA1Q6P2D8 792 aa22.62■■□□□ 1.21
LIME1-205ENST00000480139 VSIG10LQ86VR7 867 aa22.62■■□□□ 1.21
LIME1-205ENST00000480139 REXO1Q8N1G1 1221 aaKnown RBP22.62■■□□□ 1.21
LIME1-205ENST00000480139 ALG1Q9BT22 464 aa22.62■■□□□ 1.21
LIME1-205ENST00000480139 PHF20Q9BVI0 1012 aa22.62■■□□□ 1.21
LIME1-205ENST00000480139 EHMT1Q9H9B1 1298 aa22.62■■□□□ 1.21
LIME1-205ENST00000480139 DDX20Q9UHI6 824 aaKnown RBP22.62■■□□□ 1.21
LIME1-205ENST00000480139 ZHX1Q9UKY1 873 aaPredicted RBP22.62■■□□□ 1.21
LIME1-205ENST00000480139 PCDHA6Q9UN73 950 aa22.62■■□□□ 1.21
LIME1-205ENST00000480139 PCDHA8Q9Y5H6 950 aa22.62■■□□□ 1.21
LIME1-205ENST00000480139 EIF3JO75822 258 aaKnown RBP22.61■■□□□ 1.21
LIME1-205ENST00000480139 STAM2O75886 525 aa22.61■■□□□ 1.21
LIME1-205ENST00000480139 MYCP01106 439 aaPredicted RBP22.61■■□□□ 1.21
LIME1-205ENST00000480139 CNGA1P29973 690 aa22.61■■□□□ 1.21
LIME1-205ENST00000480139 CCND2P30279 289 aa22.61■■□□□ 1.21
LIME1-205ENST00000480139 TAPT1Q6NXT6 567 aa22.61■■□□□ 1.21
LIME1-205ENST00000480139 FAM184BQ9ULE4 1060 aa22.61■■□□□ 1.21
LIME1-205ENST00000480139 PCDHA4Q9UN74 947 aa22.61■■□□□ 1.21
LIME1-205ENST00000480139 DDX49Q9Y6V7 483 aaKnown RBP22.61■■□□□ 1.21
LIME1-205ENST00000480139 RBM47A0AV96 593 aaKnown RBP22.6■■□□□ 1.21
LIME1-205ENST00000480139 GJA8P48165 433 aa22.6■■□□□ 1.21
LIME1-205ENST00000480139 CUL4AQ13619 759 aa22.6■■□□□ 1.21
LIME1-205ENST00000480139 NPY5RQ15761 445 aa22.6■■□□□ 1.21
LIME1-205ENST00000480139 CCDC144BQ3MJ40 725 aa22.6■■□□□ 1.21
LIME1-205ENST00000480139 PCNX4Q63HM2 1172 aa22.6■■□□□ 1.21
LIME1-205ENST00000480139 LHX8Q68G74 356 aa22.6■■□□□ 1.21
LIME1-205ENST00000480139 FBXO16Q8IX29 292 aaPredicted RBP22.6■■□□□ 1.21
LIME1-205ENST00000480139 IL31RAQ8NI17 732 aa22.6■■□□□ 1.21
LIME1-205ENST00000480139 DEFB118Q96PH6 123 aa22.6■■□□□ 1.21
LIME1-205ENST00000480139 CRISPLD2Q9H0B8 497 aa22.6■■□□□ 1.21
LIME1-205ENST00000480139 CCDC85CA6NKD9 419 aa22.59■■□□□ 1.21
LIME1-205ENST00000480139 DTNBO60941 627 aa22.59■■□□□ 1.21
LIME1-205ENST00000480139 SGPL1O95470 568 aa22.59■■□□□ 1.21
LIME1-205ENST00000480139 IQSEC1Q6DN90 963 aa22.59■■□□□ 1.21
LIME1-205ENST00000480139 U2AF1L4Q8WU68 220 aaKnown RBP22.59■■□□□ 1.21
LIME1-205ENST00000480139 ANO3Q9BYT9 981 aa22.59■■□□□ 1.21
LIME1-205ENST00000480139 K7ELQ4 463 aaPredicted RBP22.58■■□□□ 1.21
LIME1-205ENST00000480139 M0R2N6 131 aa22.58■■□□□ 1.21
LIME1-205ENST00000480139 EEPD1Q7L9B9 569 aa22.58■■□□□ 1.21
LIME1-205ENST00000480139 BLIDQ8IZY5 108 aa22.58■■□□□ 1.21
LIME1-205ENST00000480139 SCFD2Q8WU76 684 aa22.58■■□□□ 1.21
LIME1-205ENST00000480139 TMEM260Q9NX78 707 aa22.58■■□□□ 1.21
LIME1-205ENST00000480139 KIF3AQ9Y496 699 aa22.58■■□□□ 1.21
LIME1-205ENST00000480139 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.58■■□□□ 1.21
LIME1-205ENST00000480139 KIAA0100Q14667 2235 aaKnown RBP22.58■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms