RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 COL25A1Q9BXS0 654 aaPredicted RBP15.52■□□□□ 0.08
CPSF4-210ENST00000469897 CNNM2Q9H8M5 875 aa15.52■□□□□ 0.08
CPSF4-210ENST00000469897 JMJD4Q9H9V9 463 aa15.52■□□□□ 0.08
CPSF4-210ENST00000469897 ABCB11O95342 1321 aa15.51■□□□□ 0.07
CPSF4-210ENST00000469897 A6NJR5 290 aa15.51■□□□□ 0.07
CPSF4-210ENST00000469897 NKRFO15226 690 aaKnown RBP eCLIP15.51■□□□□ 0.07
CPSF4-210ENST00000469897 ARIH2O95376 493 aa15.51■□□□□ 0.07
CPSF4-210ENST00000469897 SUPT20HL2P0C7V6 817 aa15.51■□□□□ 0.07
CPSF4-210ENST00000469897 GSPT1P15170 499 aaKnown RBP15.51■□□□□ 0.07
CPSF4-210ENST00000469897 CHMP4BP1P59074 171 aa15.51■□□□□ 0.07
CPSF4-210ENST00000469897 BRDTQ58F21 947 aaPredicted RBP15.51■□□□□ 0.07
CPSF4-210ENST00000469897 FAM47CQ5HY64 1035 aa15.51■□□□□ 0.07
CPSF4-210ENST00000469897 IFIT1BQ5T764 474 aaKnown RBP15.51■□□□□ 0.07
CPSF4-210ENST00000469897 SEPT14Q6ZU15 432 aa15.51■□□□□ 0.07
CPSF4-210ENST00000469897 FBXO11Q86XK2 927 aa15.51■□□□□ 0.07
CPSF4-210ENST00000469897 MCF2L2Q86YR7 1114 aa15.51■□□□□ 0.07
CPSF4-210ENST00000469897 STAG2Q8N3U4 1231 aa15.51■□□□□ 0.07
CPSF4-210ENST00000469897 WNT8AQ9H1J5 351 aa15.51■□□□□ 0.07
CPSF4-210ENST00000469897 COL20A1Q9P218 1284 aa15.51■□□□□ 0.07
CPSF4-210ENST00000469897 IRX6P78412 446 aaPredicted RBP15.5■□□□□ 0.07
CPSF4-210ENST00000469897 TTLL4Q14679 1199 aa15.5■□□□□ 0.07
CPSF4-210ENST00000469897 LY6KQ17RY6 165 aa15.5■□□□□ 0.07
CPSF4-210ENST00000469897 CYB5R4Q7L1T6 521 aa15.5■□□□□ 0.07
CPSF4-210ENST00000469897 RPUSD2Q8IZ73 545 aaKnown RBP15.5■□□□□ 0.07
CPSF4-210ENST00000469897 NSUN6Q8TEA1 469 aaKnown RBP15.5■□□□□ 0.07
CPSF4-210ENST00000469897 MRPL11Q9Y3B7 192 aaKnown RBP15.5■□□□□ 0.07
CPSF4-210ENST00000469897 KLRF2D3W0D1 207 aa15.49■□□□□ 0.07
CPSF4-210ENST00000469897 KPNA6O60684 536 aa15.49■□□□□ 0.07
CPSF4-210ENST00000469897 STXBP2Q15833 593 aa15.49■□□□□ 0.07
CPSF4-210ENST00000469897 TTC22Q5TAA0 569 aa15.49■□□□□ 0.07
CPSF4-210ENST00000469897 ARHGEF16Q5VV41 709 aa15.49■□□□□ 0.07
CPSF4-210ENST00000469897 CCDC62Q6P9F0 684 aa15.49■□□□□ 0.07
CPSF4-210ENST00000469897 VWCEQ96DN2 955 aa15.49■□□□□ 0.07
CPSF4-210ENST00000469897 RMDN3Q96TC7 470 aa15.49■□□□□ 0.07
CPSF4-210ENST00000469897 MAF1Q9H063 256 aa15.49■□□□□ 0.07
CPSF4-210ENST00000469897 MSRAQ9UJ68 235 aa15.49■□□□□ 0.07
CPSF4-210ENST00000469897 RAD50Q92878 1312 aa15.48■□□□□ 0.07
CPSF4-210ENST00000469897 CFBP00751 764 aa15.48■□□□□ 0.07
CPSF4-210ENST00000469897 EIF2AK2P19525 551 aaKnown RBP15.48■□□□□ 0.07
CPSF4-210ENST00000469897 PTH1RQ03431 593 aa15.48■□□□□ 0.07
CPSF4-210ENST00000469897 SEC23AQ15436 765 aa15.48■□□□□ 0.07
CPSF4-210ENST00000469897 CHST3Q7LGC8 479 aa15.48■□□□□ 0.07
CPSF4-210ENST00000469897 DEFB128Q7Z7B8 93 aa15.48■□□□□ 0.07
CPSF4-210ENST00000469897 AFG1LQ8WV93 481 aa15.48■□□□□ 0.07
CPSF4-210ENST00000469897 IWS1Q96ST2 819 aa15.48■□□□□ 0.07
CPSF4-210ENST00000469897 AMNQ9BXJ7 453 aa15.48■□□□□ 0.07
CPSF4-210ENST00000469897 MTIF3Q9H2K0 278 aaKnown RBP15.48■□□□□ 0.07
CPSF4-210ENST00000469897 PRDM12Q9H4Q4 367 aa15.48■□□□□ 0.07
CPSF4-210ENST00000469897 MAD2L2Q9UI95 211 aa15.48■□□□□ 0.07
CPSF4-210ENST00000469897 ZBBXA8MT70 800 aa15.47■□□□□ 0.07
CPSF4-210ENST00000469897 GH1P01241 217 aa15.47■□□□□ 0.07
CPSF4-210ENST00000469897 CHMLP26374 656 aa15.47■□□□□ 0.07
CPSF4-210ENST00000469897 RABGGTBP53611 331 aa15.47■□□□□ 0.07
CPSF4-210ENST00000469897 TRDNQ13061 729 aa15.47■□□□□ 0.07
CPSF4-210ENST00000469897 NFRKBQ6P4R8 1299 aa15.47■□□□□ 0.07
CPSF4-210ENST00000469897 PPM1EQ8WY54 764 aa15.47■□□□□ 0.07
CPSF4-210ENST00000469897 NKX2-4Q9H2Z4 354 aa15.47■□□□□ 0.07
CPSF4-210ENST00000469897 SLC4A7Q9Y6M7 1214 aa15.47■□□□□ 0.07
CPSF4-210ENST00000469897 LAMA2P24043 3122 aaKnown RBP15.47■□□□□ 0.07
CPSF4-210ENST00000469897 PALM3A6NDB9 673 aaPredicted RBP15.46■□□□□ 0.07
CPSF4-210ENST00000469897 OPLAHO14841 1288 aa15.46■□□□□ 0.07
CPSF4-210ENST00000469897 IFIT3O14879 490 aaKnown RBP15.46■□□□□ 0.07
CPSF4-210ENST00000469897 PPP1R11O60927 126 aaPredicted RBP15.46■□□□□ 0.07
CPSF4-210ENST00000469897 EIF3JO75822 258 aaKnown RBP15.46■□□□□ 0.07
CPSF4-210ENST00000469897 NR3C2P08235 984 aa15.46■□□□□ 0.07
CPSF4-210ENST00000469897 CYP21A2P08686 494 aa15.46■□□□□ 0.07
CPSF4-210ENST00000469897 PTPN11Q06124 597 aaPredicted RBP15.46■□□□□ 0.07
CPSF4-210ENST00000469897 RAB30Q15771 203 aa15.46■□□□□ 0.07
CPSF4-210ENST00000469897 RETREG2Q8NC44 543 aa15.46■□□□□ 0.07
CPSF4-210ENST00000469897 RUFY2Q8WXA3 655 aa15.46■□□□□ 0.07
CPSF4-210ENST00000469897 SLC28A3Q9HAS3 691 aa15.46■□□□□ 0.07
CPSF4-210ENST00000469897 SENP2Q9HC62 589 aa15.46■□□□□ 0.07
CPSF4-210ENST00000469897 PXMP2Q9NR77 195 aa15.46■□□□□ 0.07
CPSF4-210ENST00000469897 DDX41Q9UJV9 622 aaKnown RBP15.46■□□□□ 0.07
CPSF4-210ENST00000469897 YBX2Q9Y2T7 364 aaKnown RBP15.46■□□□□ 0.07
CPSF4-210ENST00000469897 PCDHA1Q9Y5I3 950 aa15.46■□□□□ 0.07
CPSF4-210ENST00000469897 TAF6LQ9Y6J9 622 aa15.46■□□□□ 0.07
CPSF4-210ENST00000469897 U3KPZ7 1027 aaPredicted RBP15.46■□□□□ 0.07
CPSF4-210ENST00000469897 ZBTB5O15062 677 aa15.45■□□□□ 0.06
CPSF4-210ENST00000469897 IQCF3P0C7M6 154 aa15.45■□□□□ 0.06
CPSF4-210ENST00000469897 MYCLP12524 364 aaPredicted RBP15.45■□□□□ 0.06
CPSF4-210ENST00000469897 MYOGP15173 224 aa15.45■□□□□ 0.06
CPSF4-210ENST00000469897 CASTP20810 708 aaKnown RBP15.45■□□□□ 0.06
CPSF4-210ENST00000469897 HOXA13P31271 388 aaPredicted RBP15.45■□□□□ 0.06
CPSF4-210ENST00000469897 ARHGAP1Q07960 439 aa15.45■□□□□ 0.06
CPSF4-210ENST00000469897 HOMER1Q86YM7 354 aa15.45■□□□□ 0.06
CPSF4-210ENST00000469897 USP38Q8NB14 1042 aa15.45■□□□□ 0.06
CPSF4-210ENST00000469897 MTMR8Q96EF0 704 aa15.45■□□□□ 0.06
CPSF4-210ENST00000469897 ZFP91Q96JP5 570 aaPredicted RBP15.45■□□□□ 0.06
CPSF4-210ENST00000469897 GAS2L1Q99501 681 aaPredicted RBP15.45■□□□□ 0.06
CPSF4-210ENST00000469897 NOD1Q9Y239 953 aa15.45■□□□□ 0.06
CPSF4-210ENST00000469897 A0A0C4DFX4 3053 aa15.45■□□□□ 0.06
CPSF4-210ENST00000469897 E7EWF7 191 aa15.44■□□□□ 0.06
CPSF4-210ENST00000469897 MMP3P08254 477 aa15.44■□□□□ 0.06
CPSF4-210ENST00000469897 ATP2A2P16615 1042 aaKnown RBP15.44■□□□□ 0.06
CPSF4-210ENST00000469897 IGFBP4P22692 258 aa15.44■□□□□ 0.06
CPSF4-210ENST00000469897 HSD17B4P51659 736 aa15.44■□□□□ 0.06
CPSF4-210ENST00000469897 ADGRE1Q14246 886 aa15.44■□□□□ 0.06
CPSF4-210ENST00000469897 PTGISQ16647 500 aa15.44■□□□□ 0.06
CPSF4-210ENST00000469897 SLC35G1Q2M3R5 365 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms