RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 FAM177A1Q8N128 213 aaPredicted RBP6.19□□□□□ -1.42
VPS29-202ENST00000447578 TSPAN17Q96FV3 270 aa6.19□□□□□ -1.42
VPS29-202ENST00000447578 SYT3Q9BQG1 590 aa6.19□□□□□ -1.42
VPS29-202ENST00000447578 SPATA6Q9NWH7 488 aaPredicted RBP6.19□□□□□ -1.42
VPS29-202ENST00000447578 CGGBP1Q9UFW8 167 aaPredicted RBP6.19□□□□□ -1.42
VPS29-202ENST00000447578 SIT1Q9Y3P8 196 aa6.19□□□□□ -1.42
VPS29-202ENST00000447578 CNR2P34972 360 aa6.18□□□□□ -1.42
VPS29-202ENST00000447578 EIF6P56537 245 aaKnown RBP6.18□□□□□ -1.42
VPS29-202ENST00000447578 AMPD2Q01433 879 aa6.18□□□□□ -1.42
VPS29-202ENST00000447578 USP33Q8TEY7 942 aa6.18□□□□□ -1.42
VPS29-202ENST00000447578 KLHL6Q8WZ60 621 aa6.18□□□□□ -1.42
VPS29-202ENST00000447578 DDX11Q96FC9 970 aa6.18□□□□□ -1.42
VPS29-202ENST00000447578 GBP3Q9H0R5 595 aa6.18□□□□□ -1.42
VPS29-202ENST00000447578 BACE2Q9Y5Z0 518 aa6.18□□□□□ -1.42
VPS29-202ENST00000447578 K7ESM1 405 aa6.17□□□□□ -1.42
VPS29-202ENST00000447578 PPM1BO75688 479 aa6.17□□□□□ -1.42
VPS29-202ENST00000447578 GIPRP48546 466 aa6.17□□□□□ -1.42
VPS29-202ENST00000447578 SMAD4Q13485 552 aaKnown RBP6.17□□□□□ -1.42
VPS29-202ENST00000447578 PPP2R5EQ16537 467 aa6.17□□□□□ -1.42
VPS29-202ENST00000447578 ARHGEF39Q8N4T4 335 aa6.17□□□□□ -1.42
VPS29-202ENST00000447578 NETO2Q8NC67 525 aa6.17□□□□□ -1.42
VPS29-202ENST00000447578 ZBTB8AQ96BR9 441 aa6.17□□□□□ -1.42
VPS29-202ENST00000447578 PEX11GQ96HA9 241 aa6.17□□□□□ -1.42
VPS29-202ENST00000447578 PUS7Q96PZ0 661 aaKnown RBP6.17□□□□□ -1.42
VPS29-202ENST00000447578 TANGO6Q9C0B7 1094 aa6.17□□□□□ -1.42
VPS29-202ENST00000447578 TGIF2Q9GZN2 237 aa6.17□□□□□ -1.42
VPS29-202ENST00000447578 CCSER2Q9H7U1 834 aa6.17□□□□□ -1.42
VPS29-202ENST00000447578 PHAXQ9H814 394 aaKnown RBP6.17□□□□□ -1.42
VPS29-202ENST00000447578 CAPN10Q9HC96 672 aa6.17□□□□□ -1.42
VPS29-202ENST00000447578 SUGT1Q9Y2Z0 365 aa6.17□□□□□ -1.42
VPS29-202ENST00000447578 NPHP3-ACAD11A0A0J9YXS1 232 aa6.16□□□□□ -1.42
VPS29-202ENST00000447578 C7orf72A4D263 438 aa6.16□□□□□ -1.42
VPS29-202ENST00000447578 AKAP8O43823 692 aaKnown RBP6.16□□□□□ -1.42
VPS29-202ENST00000447578 FUCA1P04066 466 aa6.16□□□□□ -1.42
VPS29-202ENST00000447578 NTRK1P04629 796 aa6.16□□□□□ -1.42
VPS29-202ENST00000447578 HSP90B1P14625 803 aaKnown RBP6.16□□□□□ -1.42
VPS29-202ENST00000447578 PAMP19021 973 aa6.16□□□□□ -1.42
VPS29-202ENST00000447578 SOX9P48436 509 aa6.16□□□□□ -1.42
VPS29-202ENST00000447578 SARSP49591 514 aaKnown RBP6.16□□□□□ -1.42
VPS29-202ENST00000447578 CACNB2Q08289 660 aaPredicted RBP6.16□□□□□ -1.42
VPS29-202ENST00000447578 MBLAC2Q68D91 279 aa6.16□□□□□ -1.42
VPS29-202ENST00000447578 WWC2Q6AWC2 1192 aa6.16□□□□□ -1.42
VPS29-202ENST00000447578 ZNF654Q8IZM8 581 aa6.16□□□□□ -1.42
VPS29-202ENST00000447578 CPA5Q8WXQ8 436 aa6.16□□□□□ -1.42
VPS29-202ENST00000447578 LNPKQ9C0E8 428 aa6.16□□□□□ -1.42
VPS29-202ENST00000447578 GPRC5CQ9NQ84 441 aa6.16□□□□□ -1.42
VPS29-202ENST00000447578 APEX2Q9UBZ4 518 aa6.16□□□□□ -1.42
VPS29-202ENST00000447578 NUDT5Q9UKK9 219 aa6.16□□□□□ -1.42
VPS29-202ENST00000447578 SLC12A7Q9Y666 1083 aa6.16□□□□□ -1.42
VPS29-202ENST00000447578 GJA9P57773 515 aa6.15□□□□□ -1.42
VPS29-202ENST00000447578 GNL2Q13823 731 aaKnown RBP6.15□□□□□ -1.42
VPS29-202ENST00000447578 COL9A2Q14055 689 aaPredicted RBP6.15□□□□□ -1.42
VPS29-202ENST00000447578 PUM1Q14671 1186 aaKnown RBP eCLIP6.15□□□□□ -1.42
VPS29-202ENST00000447578 SLC9A5Q14940 896 aa6.15□□□□□ -1.42
VPS29-202ENST00000447578 ZNF761Q86XN6 746 aaPredicted RBP6.15□□□□□ -1.42
VPS29-202ENST00000447578 ZNF513Q8N8E2 541 aaPredicted RBP6.15□□□□□ -1.42
VPS29-202ENST00000447578 RCC1LQ96I51 464 aaKnown RBP6.15□□□□□ -1.42
VPS29-202ENST00000447578 CLEC1BQ9P126 229 aa6.15□□□□□ -1.42
VPS29-202ENST00000447578 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.15□□□□□ -1.42
VPS29-202ENST00000447578 CCDC180Q9P1Z9 1646 aa6.14□□□□□ -1.43
VPS29-202ENST00000447578 C8BP07358 591 aa6.14□□□□□ -1.43
VPS29-202ENST00000447578 KIAA1211LQ6NV74 962 aa6.14□□□□□ -1.43
VPS29-202ENST00000447578 C19orf47Q8N9M1 422 aaKnown RBP6.14□□□□□ -1.43
VPS29-202ENST00000447578 SLC43A3Q8NBI5 491 aa6.14□□□□□ -1.43
VPS29-202ENST00000447578 PLEKHO2Q8TD55 490 aa6.14□□□□□ -1.43
VPS29-202ENST00000447578 DPF3Q92784 378 aa6.14□□□□□ -1.43
VPS29-202ENST00000447578 GPR20Q99678 358 aa6.14□□□□□ -1.43
VPS29-202ENST00000447578 GORASP1Q9BQQ3 440 aa6.14□□□□□ -1.43
VPS29-202ENST00000447578 ACBD3Q9H3P7 528 aa6.14□□□□□ -1.43
VPS29-202ENST00000447578 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.14□□□□□ -1.43
VPS29-202ENST00000447578 NTMQ9P121 344 aa6.14□□□□□ -1.43
VPS29-202ENST00000447578 MYRFQ9Y2G1 1151 aa6.14□□□□□ -1.43
VPS29-202ENST00000447578 SMARCA5O60264 1052 aaPredicted RBP6.13□□□□□ -1.43
VPS29-202ENST00000447578 NPHS1O60500 1241 aa6.13□□□□□ -1.43
VPS29-202ENST00000447578 KCNH1O95259 989 aa6.13□□□□□ -1.43
VPS29-202ENST00000447578 ZBTB7AO95365 584 aa6.13□□□□□ -1.43
VPS29-202ENST00000447578 PLS3P13797 630 aa6.13□□□□□ -1.43
VPS29-202ENST00000447578 ATP2B1P20020 1258 aa6.13□□□□□ -1.43
VPS29-202ENST00000447578 GRB10Q13322 594 aa6.13□□□□□ -1.43
VPS29-202ENST00000447578 ZNF827Q17R98 1081 aa6.13□□□□□ -1.43
VPS29-202ENST00000447578 TTLL7Q6ZT98 887 aa6.13□□□□□ -1.43
VPS29-202ENST00000447578 STK32CQ86UX6 486 aa6.13□□□□□ -1.43
VPS29-202ENST00000447578 FAM26EQ8N5C1 309 aa6.13□□□□□ -1.43
VPS29-202ENST00000447578 GPRASP2Q96D09 838 aa6.13□□□□□ -1.43
VPS29-202ENST00000447578 TINF2Q9BSI4 451 aa6.13□□□□□ -1.43
VPS29-202ENST00000447578 LGR4Q9BXB1 951 aa6.13□□□□□ -1.43
VPS29-202ENST00000447578 BTG4Q9NY30 223 aa6.13□□□□□ -1.43
VPS29-202ENST00000447578 MARCH2Q9P0N8 246 aa6.13□□□□□ -1.43
VPS29-202ENST00000447578 AKT3Q9Y243 479 aa6.13□□□□□ -1.43
VPS29-202ENST00000447578 CYP2C8P10632 490 aa6.12□□□□□ -1.43
VPS29-202ENST00000447578 CANXP27824 592 aaKnown RBP6.12□□□□□ -1.43
VPS29-202ENST00000447578 NASPP49321 788 aaPredicted RBP6.12□□□□□ -1.43
VPS29-202ENST00000447578 SCRN1Q12765 414 aa6.12□□□□□ -1.43
VPS29-202ENST00000447578 INF2Q27J81 1249 aa6.12□□□□□ -1.43
VPS29-202ENST00000447578 VHLLQ6RSH7 139 aa6.12□□□□□ -1.43
VPS29-202ENST00000447578 TEX2Q8IWB9 1127 aa6.12□□□□□ -1.43
VPS29-202ENST00000447578 LINC00482Q8N8I6 264 aa6.12□□□□□ -1.43
VPS29-202ENST00000447578 RASGRP4Q8TDF6 673 aa6.12□□□□□ -1.43
VPS29-202ENST00000447578 ADAMTS17Q8TE56 1095 aa6.12□□□□□ -1.43
VPS29-202ENST00000447578 SHDQ96IW2 340 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms