RNA–Protein interactions for RNA: ENST00000416651.5

NIF3L1-206, Transcript of NGG1 interacting factor 3 like 1, human

TSL 2 BASIC

Gene NIF3L1, Length 967 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NIF3L1-206	ENST00000416651	TLR7	Q9NYK1	1049 aa	Known RBP	10.53	□□□□□ -0.72
NIF3L1-206	ENST00000416651	TECTA	O75443	2155 aa		10.53	□□□□□ -0.72
NIF3L1-206	ENST00000416651	CYP2D7	A0A087X1C5	515 aa		10.52	□□□□□ -0.73
NIF3L1-206	ENST00000416651	PNMA6E	A0A0J9YXQ4	647 aa		10.52	□□□□□ -0.73
NIF3L1-206	ENST00000416651		J3QL48	77 aa		10.52	□□□□□ -0.73
NIF3L1-206	ENST00000416651	DCX	O43602	365 aa		10.52	□□□□□ -0.73
NIF3L1-206	ENST00000416651	CNTN2	Q02246	1040 aa		10.52	□□□□□ -0.73
NIF3L1-206	ENST00000416651	LEXM	Q3ZCV2	418 aa		10.52	□□□□□ -0.73
NIF3L1-206	ENST00000416651	SLFNL1	Q499Z3	407 aa		10.52	□□□□□ -0.73
NIF3L1-206	ENST00000416651	MSS51	Q4VC12	460 aa		10.52	□□□□□ -0.73
NIF3L1-206	ENST00000416651	PTCRA	Q6ISU1	281 aa	Predicted RBP	10.52	□□□□□ -0.73
NIF3L1-206	ENST00000416651	ATF7IP	Q6VMQ6	1270 aa		10.52	□□□□□ -0.73
NIF3L1-206	ENST00000416651	HERC6	Q8IVU3	1022 aa		10.52	□□□□□ -0.73
NIF3L1-206	ENST00000416651	MAGEB6	Q8N7X4	407 aa		10.52	□□□□□ -0.73
NIF3L1-206	ENST00000416651	MRGPRX2	Q96LB1	330 aa		10.52	□□□□□ -0.73
NIF3L1-206	ENST00000416651	VCPKMT	Q9H867	229 aa		10.52	□□□□□ -0.73
NIF3L1-206	ENST00000416651	SUGCT	Q9HAC7	445 aa		10.52	□□□□□ -0.73
NIF3L1-206	ENST00000416651	ALG13	Q9NP73	1137 aa	Known RBP	10.52	□□□□□ -0.73
NIF3L1-206	ENST00000416651	PDGFC	Q9NRA1	345 aa		10.52	□□□□□ -0.73
NIF3L1-206	ENST00000416651	TNN	Q9UQP3	1299 aa		10.52	□□□□□ -0.73
NIF3L1-206	ENST00000416651	UQCRFS1P1	P0C7P4	283 aa		10.51	□□□□□ -0.73
NIF3L1-206	ENST00000416651	TCF15	Q12870	199 aa		10.51	□□□□□ -0.73
NIF3L1-206	ENST00000416651	TTC39A	Q5SRH9	613 aa		10.51	□□□□□ -0.73
NIF3L1-206	ENST00000416651	FAM83B	Q5T0W9	1011 aa		10.51	□□□□□ -0.73
NIF3L1-206	ENST00000416651	ARMCX2	Q7L311	632 aa		10.51	□□□□□ -0.73
NIF3L1-206	ENST00000416651	RIOK1	Q9BRS2	568 aa	Known RBP	10.51	□□□□□ -0.73
NIF3L1-206	ENST00000416651	TMX2	Q9Y320	296 aa		10.51	□□□□□ -0.73
NIF3L1-206	ENST00000416651	NAV1	Q8NEY1	1877 aa		10.51	□□□□□ -0.73
NIF3L1-206	ENST00000416651	IDH1	O75874	414 aa	Known RBP	10.5	□□□□□ -0.73
NIF3L1-206	ENST00000416651	POLR3D	P05423	398 aa	Predicted RBP	10.5	□□□□□ -0.73
NIF3L1-206	ENST00000416651	ALAD	P13716	330 aa		10.5	□□□□□ -0.73
NIF3L1-206	ENST00000416651	IRS1	P35568	1242 aa		10.5	□□□□□ -0.73
NIF3L1-206	ENST00000416651	DEFB103A	P81534	67 aa		10.5	□□□□□ -0.73
NIF3L1-206	ENST00000416651	GPNMB	Q14956	572 aa		10.5	□□□□□ -0.73
NIF3L1-206	ENST00000416651	SNRNP48	Q6IEG0	339 aa	Known RBP	10.5	□□□□□ -0.73
NIF3L1-206	ENST00000416651	RNF19B	Q6ZMZ0	732 aa		10.5	□□□□□ -0.73
NIF3L1-206	ENST00000416651	TTC6	Q86TZ1	520 aa		10.5	□□□□□ -0.73
NIF3L1-206	ENST00000416651	CCDC144CP	Q8IYA2	1237 aa		10.5	□□□□□ -0.73
NIF3L1-206	ENST00000416651	RPUSD2	Q8IZ73	545 aa	Known RBP	10.5	□□□□□ -0.73
NIF3L1-206	ENST00000416651	SDR42E1	Q8WUS8	393 aa		10.5	□□□□□ -0.73
NIF3L1-206	ENST00000416651	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	10.5	□□□□□ -0.73
NIF3L1-206	ENST00000416651	PPP1R9A	Q9ULJ8	1098 aa		10.5	□□□□□ -0.73
NIF3L1-206	ENST00000416651	GNE	Q9Y223	722 aa	Known RBP	10.5	□□□□□ -0.73
NIF3L1-206	ENST00000416651	C5orf42	Q9H799	3197 aa		10.5	□□□□□ -0.73
NIF3L1-206	ENST00000416651	WDR46	O15213	610 aa	Known RBP	10.49	□□□□□ -0.73
NIF3L1-206	ENST00000416651	DYNC1LI2	O43237	492 aa	Predicted RBP	10.49	□□□□□ -0.73
NIF3L1-206	ENST00000416651	RAD21	O60216	631 aa		10.49	□□□□□ -0.73
NIF3L1-206	ENST00000416651	EEF2	P13639	858 aa	Known RBP	10.49	□□□□□ -0.73
NIF3L1-206	ENST00000416651	NKX3-2	P78367	333 aa		10.49	□□□□□ -0.73
NIF3L1-206	ENST00000416651	TNFAIP2	Q03169	654 aa		10.49	□□□□□ -0.73
NIF3L1-206	ENST00000416651	ICA1	Q05084	483 aa		10.49	□□□□□ -0.73
NIF3L1-206	ENST00000416651	ZP2	Q05996	745 aa		10.49	□□□□□ -0.73
NIF3L1-206	ENST00000416651	NOL8	Q76FK4	1167 aa	Known RBP	10.49	□□□□□ -0.73
NIF3L1-206	ENST00000416651	CPXCR1	Q8N123	301 aa		10.49	□□□□□ -0.73
NIF3L1-206	ENST00000416651	HPS1	Q92902	700 aa		10.49	□□□□□ -0.73
NIF3L1-206	ENST00000416651	DDX11	Q96FC9	970 aa		10.49	□□□□□ -0.73
NIF3L1-206	ENST00000416651	PURB	Q96QR8	312 aa	Known RBP	10.49	□□□□□ -0.73
NIF3L1-206	ENST00000416651	MUTYH	Q9UIF7	546 aa		10.49	□□□□□ -0.73
NIF3L1-206	ENST00000416651	NOB1	Q9ULX3	412 aa	Known RBP	10.49	□□□□□ -0.73
NIF3L1-206	ENST00000416651	MYO7A	Q13402	2215 aa		10.49	□□□□□ -0.73
NIF3L1-206	ENST00000416651	PRKAB2	O43741	272 aa		10.48	□□□□□ -0.73
NIF3L1-206	ENST00000416651	CHGB	P05060	677 aa		10.48	□□□□□ -0.73
NIF3L1-206	ENST00000416651	FSCN1	Q16658	493 aa	Known RBP	10.48	□□□□□ -0.73
NIF3L1-206	ENST00000416651	TNNI3K	Q59H18	835 aa		10.48	□□□□□ -0.73
NIF3L1-206	ENST00000416651	FAM117B	Q6P1L5	589 aa		10.48	□□□□□ -0.73
NIF3L1-206	ENST00000416651	EEPD1	Q7L9B9	569 aa		10.48	□□□□□ -0.73
NIF3L1-206	ENST00000416651	TLK2	Q86UE8	772 aa		10.48	□□□□□ -0.73
NIF3L1-206	ENST00000416651	NEK9	Q8TD19	979 aa		10.48	□□□□□ -0.73
NIF3L1-206	ENST00000416651	KIFC2	Q96AC6	838 aa		10.48	□□□□□ -0.73
NIF3L1-206	ENST00000416651	SLC9A7	Q96T83	725 aa		10.48	□□□□□ -0.73
NIF3L1-206	ENST00000416651	CCDC8	Q9H0W5	538 aa	Predicted RBP	10.48	□□□□□ -0.73
NIF3L1-206	ENST00000416651	ABHD16B	Q9H3Z7	469 aa		10.48	□□□□□ -0.73
NIF3L1-206	ENST00000416651	SPC25	Q9HBM1	224 aa		10.48	□□□□□ -0.73
NIF3L1-206	ENST00000416651	RAVER2	Q9HCJ3	691 aa	Known RBP	10.48	□□□□□ -0.73
NIF3L1-206	ENST00000416651	MCM9	Q9NXL9	1143 aa		10.48	□□□□□ -0.73
NIF3L1-206	ENST00000416651	DBNL	Q9UJU6	430 aa	Known RBP	10.48	□□□□□ -0.73
NIF3L1-206	ENST00000416651	FPGT-TNNI3K	V9GXZ4	949 aa		10.48	□□□□□ -0.73
NIF3L1-206	ENST00000416651	PLXNA3	P51805	1871 aa		10.47	□□□□□ -0.73
NIF3L1-206	ENST00000416651	IQCF3	P0C7M6	154 aa		10.47	□□□□□ -0.73
NIF3L1-206	ENST00000416651	MTX1	Q13505	466 aa		10.47	□□□□□ -0.73
NIF3L1-206	ENST00000416651	TMEM179	Q6ZVK1	233 aa		10.47	□□□□□ -0.73
NIF3L1-206	ENST00000416651	MSL3	Q8N5Y2	521 aa	Known RBP	10.47	□□□□□ -0.73
NIF3L1-206	ENST00000416651	C17orf80	Q9BSJ5	609 aa		10.47	□□□□□ -0.73
NIF3L1-206	ENST00000416651	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	10.47	□□□□□ -0.73
NIF3L1-206	ENST00000416651	MRS2	Q9HD23	443 aa		10.47	□□□□□ -0.73
NIF3L1-206	ENST00000416651	ZNF536	O15090	1300 aa		10.47	□□□□□ -0.73
NIF3L1-206	ENST00000416651	TNKS	O95271	1327 aa		10.47	□□□□□ -0.73
NIF3L1-206	ENST00000416651	COL4A6	Q14031	1691 aa		10.47	□□□□□ -0.73
NIF3L1-206	ENST00000416651	TRIP12	Q14669	1992 aa	Predicted RBP	10.46	□□□□□ -0.73
NIF3L1-206	ENST00000416651	PTPRZ1	P23471	2315 aa	Predicted RBP	10.46	□□□□□ -0.73
NIF3L1-206	ENST00000416651	LINC01553	A4QN01	128 aa		10.46	□□□□□ -0.73
NIF3L1-206	ENST00000416651	KRT37	O76014	449 aa		10.46	□□□□□ -0.73
NIF3L1-206	ENST00000416651	WDR5	P61964	334 aa	Known RBP	10.46	□□□□□ -0.73
NIF3L1-206	ENST00000416651	USP46	P62068	366 aa		10.46	□□□□□ -0.73
NIF3L1-206	ENST00000416651	CLUL1	Q15846	466 aa		10.46	□□□□□ -0.73
NIF3L1-206	ENST00000416651	TAPT1	Q6NXT6	567 aa		10.46	□□□□□ -0.73
NIF3L1-206	ENST00000416651	EP400NL	Q6ZTU2	488 aa		10.46	□□□□□ -0.73
NIF3L1-206	ENST00000416651	FBXO16	Q8IX29	292 aa	Predicted RBP	10.46	□□□□□ -0.73
NIF3L1-206	ENST00000416651	LCORL	Q8N3X6	602 aa		10.46	□□□□□ -0.73
NIF3L1-206	ENST00000416651	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	10.46	□□□□□ -0.73

Retrieved 100 of 20,778 RNA–protein pairs in 39 ms