RNA–Protein interactions for RNA: ENST00000393773.7

CHMP3-202, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-202ENST00000393773 RNF207Q6ZRF8 634 aa18.11■□□□□ 0.49
CHMP3-202ENST00000393773 COPS5Q92905 334 aa18.11■□□□□ 0.49
CHMP3-202ENST00000393773 TSPYL2Q9H2G4 693 aaPredicted RBP18.11■□□□□ 0.49
CHMP3-202ENST00000393773 TCP11L1Q9NUJ3 509 aa18.11■□□□□ 0.49
CHMP3-202ENST00000393773 MICAL3Q7RTP6 2002 aa18.11■□□□□ 0.49
CHMP3-202ENST00000393773 A0A0D9SFI3 127 aa18.1■□□□□ 0.49
CHMP3-202ENST00000393773 ARIH2O95376 493 aa18.1■□□□□ 0.49
CHMP3-202ENST00000393773 IQCF3P0C7M6 154 aa18.1■□□□□ 0.49
CHMP3-202ENST00000393773 SNHG28P0DPA3 235 aa18.1■□□□□ 0.49
CHMP3-202ENST00000393773 ACTN1P12814 892 aa18.1■□□□□ 0.49
CHMP3-202ENST00000393773 PDE4DQ08499 809 aa18.1■□□□□ 0.49
CHMP3-202ENST00000393773 ZNF543Q08ER8 600 aa18.1■□□□□ 0.49
CHMP3-202ENST00000393773 FAM47CQ5HY64 1035 aa18.1■□□□□ 0.49
CHMP3-202ENST00000393773 SCFD2Q8WU76 684 aa18.1■□□□□ 0.49
CHMP3-202ENST00000393773 HELLSQ9NRZ9 838 aa18.1■□□□□ 0.49
CHMP3-202ENST00000393773 TAP1Q03518 808 aa18.09■□□□□ 0.49
CHMP3-202ENST00000393773 PTPN11Q06124 597 aaPredicted RBP18.09■□□□□ 0.49
CHMP3-202ENST00000393773 RRP12Q5JTH9 1297 aaKnown RBP18.09■□□□□ 0.49
CHMP3-202ENST00000393773 HERC6Q8IVU3 1022 aa18.09■□□□□ 0.49
CHMP3-202ENST00000393773 DNERQ8NFT8 737 aa18.09■□□□□ 0.49
CHMP3-202ENST00000393773 EVI5LQ96CN4 794 aa18.09■□□□□ 0.49
CHMP3-202ENST00000393773 FAM227BQ96M60 508 aa18.09■□□□□ 0.49
CHMP3-202ENST00000393773 CTAGE1Q96RT6 745 aa18.09■□□□□ 0.49
CHMP3-202ENST00000393773 CERS4Q9HA82 394 aa18.09■□□□□ 0.49
CHMP3-202ENST00000393773 GPHNQ9NQX3 736 aaPredicted RBP18.09■□□□□ 0.49
CHMP3-202ENST00000393773 TOMM22Q9NS69 142 aa18.09■□□□□ 0.49
CHMP3-202ENST00000393773 KPNA6O60684 536 aa18.08■□□□□ 0.48
CHMP3-202ENST00000393773 FGAP02671 866 aa18.08■□□□□ 0.48
CHMP3-202ENST00000393773 BRDTQ58F21 947 aaPredicted RBP18.08■□□□□ 0.48
CHMP3-202ENST00000393773 KRT40Q6A162 431 aa18.08■□□□□ 0.48
CHMP3-202ENST00000393773 SPRED2Q7Z698 418 aa18.08■□□□□ 0.48
CHMP3-202ENST00000393773 ZNF589Q86UQ0 364 aaPredicted RBP18.08■□□□□ 0.48
CHMP3-202ENST00000393773 PHOSPHO2Q8TCD6 241 aa18.08■□□□□ 0.48
CHMP3-202ENST00000393773 PNMA2Q9UL42 364 aa18.08■□□□□ 0.48
CHMP3-202ENST00000393773 GTPBP6O43824 516 aaPredicted RBP18.07■□□□□ 0.48
CHMP3-202ENST00000393773 BAIAP3O94812 1187 aa18.07■□□□□ 0.48
CHMP3-202ENST00000393773 TXNP10599 105 aaKnown RBP18.07■□□□□ 0.48
CHMP3-202ENST00000393773 HSPD1P10809 573 aaKnown RBP18.07■□□□□ 0.48
CHMP3-202ENST00000393773 AAK1Q2M2I8 961 aa18.07■□□□□ 0.48
CHMP3-202ENST00000393773 TBC1D10CQ8IV04 446 aa18.07■□□□□ 0.48
CHMP3-202ENST00000393773 MPHOSPH6Q99547 160 aaKnown RBP18.07■□□□□ 0.48
CHMP3-202ENST00000393773 ATG2AQ2TAZ0 1938 aa18.06■□□□□ 0.48
CHMP3-202ENST00000393773 NEDD4P46934 1319 aa18.06■□□□□ 0.48
CHMP3-202ENST00000393773 NLRC5Q86WI3 1866 aa18.06■□□□□ 0.48
CHMP3-202ENST00000393773 PLA2G5P39877 138 aa18.06■□□□□ 0.48
CHMP3-202ENST00000393773 HAND2P61296 217 aa18.06■□□□□ 0.48
CHMP3-202ENST00000393773 BFSP2Q13515 415 aa18.06■□□□□ 0.48
CHMP3-202ENST00000393773 GPNMBQ14956 572 aa18.06■□□□□ 0.48
CHMP3-202ENST00000393773 SKIV2LQ15477 1246 aaKnown RBP18.06■□□□□ 0.48
CHMP3-202ENST00000393773 CCDC62Q6P9F0 684 aa18.06■□□□□ 0.48
CHMP3-202ENST00000393773 ARNTL2Q8WYA1 636 aa18.06■□□□□ 0.48
CHMP3-202ENST00000393773 DHX38Q92620 1227 aaKnown RBP18.06■□□□□ 0.48
CHMP3-202ENST00000393773 LPXNO60711 386 aa18.05■□□□□ 0.48
CHMP3-202ENST00000393773 MMP3P08254 477 aa18.05■□□□□ 0.48
CHMP3-202ENST00000393773 ARHGAP1Q07960 439 aa18.05■□□□□ 0.48
CHMP3-202ENST00000393773 RBL2Q08999 1139 aa18.05■□□□□ 0.48
CHMP3-202ENST00000393773 USH1GQ495M9 461 aa18.05■□□□□ 0.48
CHMP3-202ENST00000393773 MCMDC2Q4G0Z9 681 aa18.05■□□□□ 0.48
CHMP3-202ENST00000393773 SESTD1Q86VW0 696 aa18.05■□□□□ 0.48
CHMP3-202ENST00000393773 RETREG2Q8NC44 543 aa18.05■□□□□ 0.48
CHMP3-202ENST00000393773 FTOQ9C0B1 505 aaKnown RBP eCLIP18.05■□□□□ 0.48
CHMP3-202ENST00000393773 CPVLQ9H3G5 476 aa18.05■□□□□ 0.48
CHMP3-202ENST00000393773 CCDC171Q6TFL3 1326 aa18.04■□□□□ 0.48
CHMP3-202ENST00000393773 LCHNA4D1U4 455 aa18.04■□□□□ 0.48
CHMP3-202ENST00000393773 PCP11498 1178 aaKnown RBP18.04■□□□□ 0.48
CHMP3-202ENST00000393773 PDE1AP54750 535 aa18.04■□□□□ 0.48
CHMP3-202ENST00000393773 WDR5P61964 334 aaKnown RBP18.04■□□□□ 0.48
CHMP3-202ENST00000393773 NMIQ13287 307 aaPredicted RBP18.04■□□□□ 0.48
CHMP3-202ENST00000393773 GRB10Q13322 594 aa18.04■□□□□ 0.48
CHMP3-202ENST00000393773 PTGISQ16647 500 aa18.04■□□□□ 0.48
CHMP3-202ENST00000393773 GPATCH4Q5T3I0 446 aaKnown RBP18.04■□□□□ 0.48
CHMP3-202ENST00000393773 GDF6Q6KF10 455 aaPredicted RBP18.04■□□□□ 0.48
CHMP3-202ENST00000393773 RGS22Q8NE09 1264 aa18.04■□□□□ 0.48
CHMP3-202ENST00000393773 CAGE1Q8TC20 777 aa18.04■□□□□ 0.48
CHMP3-202ENST00000393773 AFAP1L1Q8TED9 768 aa18.04■□□□□ 0.48
CHMP3-202ENST00000393773 AFG1LQ8WV93 481 aa18.04■□□□□ 0.48
CHMP3-202ENST00000393773 KAT2BQ92831 832 aa18.04■□□□□ 0.48
CHMP3-202ENST00000393773 TTC14Q96N46 770 aa18.04■□□□□ 0.48
CHMP3-202ENST00000393773 COL20A1Q9P218 1284 aa18.04■□□□□ 0.48
CHMP3-202ENST00000393773 COG5Q9UP83 839 aa18.04■□□□□ 0.48
CHMP3-202ENST00000393773 NOD1Q9Y239 953 aa18.04■□□□□ 0.48
CHMP3-202ENST00000393773 GOLGA8HP0CJ92 632 aa18.03■□□□□ 0.48
CHMP3-202ENST00000393773 TICAM2Q86XR7 235 aa18.03■□□□□ 0.48
CHMP3-202ENST00000393773 CCDC155Q8N6L0 562 aa18.03■□□□□ 0.48
CHMP3-202ENST00000393773 C1QTNF1Q9BXJ1 281 aa18.03■□□□□ 0.48
CHMP3-202ENST00000393773 DOCK5Q9H7D0 1870 aa18.03■□□□□ 0.48
CHMP3-202ENST00000393773 B4DLN1 442 aa18.02■□□□□ 0.48
CHMP3-202ENST00000393773 TLL1O43897 1013 aa18.02■□□□□ 0.48
CHMP3-202ENST00000393773 CXCL10P02778 98 aa18.02■□□□□ 0.48
CHMP3-202ENST00000393773 KCNJ6P48051 423 aa18.02■□□□□ 0.48
CHMP3-202ENST00000393773 MRPL12P52815 198 aaKnown RBP18.02■□□□□ 0.48
CHMP3-202ENST00000393773 DEFB103AP81534 67 aa18.02■□□□□ 0.48
CHMP3-202ENST00000393773 CDC37Q16543 378 aaPredicted RBP18.02■□□□□ 0.48
CHMP3-202ENST00000393773 LY6KQ17RY6 165 aa18.02■□□□□ 0.48
CHMP3-202ENST00000393773 TCTN1Q2MV58 587 aa18.02■□□□□ 0.48
CHMP3-202ENST00000393773 RALGAPA2Q2PPJ7 1873 aa18.02■□□□□ 0.48
CHMP3-202ENST00000393773 MFSD6Q6ZSS7 791 aa18.02■□□□□ 0.48
CHMP3-202ENST00000393773 TMCO2Q7Z6W1 182 aaPredicted RBP18.02■□□□□ 0.48
CHMP3-202ENST00000393773 GDPD5Q8WTR4 605 aa18.02■□□□□ 0.48
CHMP3-202ENST00000393773 MAF1Q9H063 256 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms