RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 DESI2Q9BSY9 194 aa10.32□□□□□ -0.76
TMEM39A-201ENST00000319172 CYP2J2P51589 502 aa10.32□□□□□ -0.76
TMEM39A-201ENST00000319172 KMT5BQ4FZB7 885 aa10.32□□□□□ -0.76
TMEM39A-201ENST00000319172 PROM2Q8N271 834 aa10.32□□□□□ -0.76
TMEM39A-201ENST00000319172 CACTINQ8WUQ7 758 aaKnown RBP10.32□□□□□ -0.76
TMEM39A-201ENST00000319172 PRIMPOLQ96LW4 560 aa10.32□□□□□ -0.76
TMEM39A-201ENST00000319172 ALS2CR12Q96Q35 445 aa10.32□□□□□ -0.76
TMEM39A-201ENST00000319172 JMJD4Q9H9V9 463 aa10.32□□□□□ -0.76
TMEM39A-201ENST00000319172 NYAP2Q9P242 653 aa10.32□□□□□ -0.76
TMEM39A-201ENST00000319172 TRPM3Q9HCF6 1732 aaPredicted RBP10.32□□□□□ -0.76
TMEM39A-201ENST00000319172 IKBKBO14920 756 aa10.32□□□□□ -0.76
TMEM39A-201ENST00000319172 CTTNQ14247 550 aaKnown RBP10.32□□□□□ -0.76
TMEM39A-201ENST00000319172 NBPF9Q3BBW0 867 aa10.32□□□□□ -0.76
TMEM39A-201ENST00000319172 AXDND1Q5T1B0 1012 aaPredicted RBP10.32□□□□□ -0.76
TMEM39A-201ENST00000319172 FAM178BQ8IXR5 827 aa10.32□□□□□ -0.76
TMEM39A-201ENST00000319172 ACER1Q8TDN7 264 aa10.32□□□□□ -0.76
TMEM39A-201ENST00000319172 TBC1D5Q92609 795 aa10.32□□□□□ -0.76
TMEM39A-201ENST00000319172 SLF1Q9BQI6 1058 aa10.32□□□□□ -0.76
TMEM39A-201ENST00000319172 MTFR1LQ9H019 292 aa10.32□□□□□ -0.76
TMEM39A-201ENST00000319172 CALUO43852 315 aaPredicted RBP10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 HDLBPQ00341 1268 aaKnown RBP10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 PRPF4BQ13523 1007 aaKnown RBP10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 DACT2Q5SW24 774 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 FAM102BQ5T8I3 360 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 APOBEC3HQ6NTF7 200 aaKnown RBP10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 KRT26Q7Z3Y9 468 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 METTL16Q86W50 562 aaKnown RBP10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 CUEDC2Q9H467 287 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 STK24Q9Y6E0 443 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 MACROD2A1Z1Q3 448 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 FOXP2O15409 715 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 POTEJP0CG39 1038 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 STAT3P40763 770 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 ECE1P42892 770 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 HMGCS2P54868 508 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 ARID5BQ14865 1188 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 ZNF658Q5TYW1 1059 aaPredicted RBP10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 USP37Q86T82 979 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 LRRC8AQ8IWT6 810 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 IFT74Q96LB3 600 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 TMEM60Q9H2L4 133 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 BHMT2Q9H2M3 363 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 PLA2G4BP0C869 781 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 PAFAH1B1P43034 410 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 KRT83P78385 493 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 RASSF7Q02833 373 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 MTMR2Q13614 643 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 ODR4Q5SWX8 454 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 CCDC122Q5T0U0 273 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 PIGOQ8TEQ8 1089 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 DEFB129Q9H1M3 183 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 AZI2Q9H6S1 392 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 MLXIPQ9HAP2 919 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 GGA3Q9NZ52 723 aa10.31□□□□□ -0.76
TMEM39A-201ENST00000319172 PALM3A6NDB9 673 aaPredicted RBP10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 SPDYE2BA6NHP3 402 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 ARHGAP6O43182 974 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 SPDYE6P0CI01 402 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 RHBDL3P58872 404 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 ENOX1Q8TC92 643 aaKnown RBP10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 FBXO28Q9NVF7 368 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 STK17AQ9UEE5 414 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 COL4A3BPQ9Y5P4 624 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 E9PMD0 336 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 KRT86O43790 486 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 COPB1P53618 953 aaKnown RBP10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 FAM193AP78312 1265 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 AP3B2Q13367 1082 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 BIRC3Q13489 604 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 SEPT14Q6ZU15 432 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 PRPF38AQ8NAV1 312 aaKnown RBP10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 ACBD3Q9H3P7 528 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 PRR12Q9ULL5 1215 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 POTEB3A0JP26 581 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 SFI1A8K8P3 1242 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 POTECB2RU33 542 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 ADAM9Q13443 819 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 PKN1Q16512 942 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 POTEBQ6S5H4 581 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 RNF207Q6ZRF8 634 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 LDHDQ86WU2 507 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 P2RX5Q93086 422 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 CNOT6LQ96LI5 555 aaKnown RBP10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 MAGEF1Q9HAY2 307 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 AFDNP55196 1824 aaKnown RBP10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 ERLIN1O75477 346 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 IREB2P48200 963 aaKnown RBP10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 TOB1P50616 345 aaPredicted RBP10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 IQCEQ6IPM2 695 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 RRAGAQ7L523 313 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 MTERF4Q7Z6M4 381 aaKnown RBP10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 FBXL16Q8N461 479 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 RMDN3Q96TC7 470 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 TUBGCP2Q9BSJ2 902 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 RIC8AQ9NPQ8 531 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 LARSQ9P2J5 1176 aaKnown RBP10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 FEM1BQ9UK73 627 aa10.3□□□□□ -0.76
TMEM39A-201ENST00000319172 TRIM49BA6NDI0 452 aa10.29□□□□□ -0.76
TMEM39A-201ENST00000319172 K7ENM7 598 aa10.29□□□□□ -0.76
TMEM39A-201ENST00000319172 DKC1O60832 514 aaKnown RBP eCLIP10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms