RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 KRT4P19013 534 aa15.02■□□□□ -0
CSPG4-201ENST00000308508 HDAC4P56524 1084 aa15.02■□□□□ -0
CSPG4-201ENST00000308508 CYP4F22Q6NT55 531 aa15.02■□□□□ -0
CSPG4-201ENST00000308508 CRLF3Q8IUI8 442 aa15.02■□□□□ -0
CSPG4-201ENST00000308508 PLBD2Q8NHP8 589 aa15.02■□□□□ -0
CSPG4-201ENST00000308508 OTUD7AQ8TE49 926 aaPredicted RBP15.02■□□□□ -0
CSPG4-201ENST00000308508 STOML1Q9UBI4 398 aa15.02■□□□□ -0
CSPG4-201ENST00000308508 BIN2Q9UBW5 565 aaPredicted RBP15.02■□□□□ -0
CSPG4-201ENST00000308508 IQANK1A0A1B0GTG1 560 aa15.02■□□□□ -0
CSPG4-201ENST00000308508 CCDC159P0C7I6 412 aa15.02■□□□□ -0
CSPG4-201ENST00000308508 CLCN6P51797 869 aa15.02■□□□□ -0
CSPG4-201ENST00000308508 KLC3Q6P597 504 aa15.02■□□□□ -0
CSPG4-201ENST00000308508 ENOX1Q8TC92 643 aaKnown RBP15.02■□□□□ -0
CSPG4-201ENST00000308508 GSDMAQ96QA5 445 aa15.02■□□□□ -0
CSPG4-201ENST00000308508 ING2Q9H160 280 aa15.02■□□□□ -0
CSPG4-201ENST00000308508 IVNS1ABPQ9Y6Y0 642 aa15.02■□□□□ -0
CSPG4-201ENST00000308508 GYG2O15488 501 aa15.02■□□□□ -0
CSPG4-201ENST00000308508 ZMYND10O75800 440 aa15.02■□□□□ -0
CSPG4-201ENST00000308508 DYDC2Q96IM9 177 aa15.02■□□□□ -0
CSPG4-201ENST00000308508 MAPK4P31152 587 aa15.02□□□□□ -0.01
CSPG4-201ENST00000308508 HINFPQ9BQA5 517 aa15.02□□□□□ -0.01
CSPG4-201ENST00000308508 PARD6BQ9BYG5 372 aa15.02□□□□□ -0.01
CSPG4-201ENST00000308508 RTEL1Q9NZ71 1219 aa15.02□□□□□ -0.01
CSPG4-201ENST00000308508 RGS12O14924 1447 aa15.02□□□□□ -0.01
CSPG4-201ENST00000308508 TMEM259Q4ZIN3 620 aa15.02□□□□□ -0.01
CSPG4-201ENST00000308508 EMBQ6PCB8 327 aa15.02□□□□□ -0.01
CSPG4-201ENST00000308508 FBXO18Q8NFZ0 1043 aa15.02□□□□□ -0.01
CSPG4-201ENST00000308508 DCAF5Q96JK2 942 aa15.02□□□□□ -0.01
CSPG4-201ENST00000308508 CYTH2Q99418 400 aa15.02□□□□□ -0.01
CSPG4-201ENST00000308508 TBK1Q9UHD2 729 aa15.02□□□□□ -0.01
CSPG4-201ENST00000308508 SERPINI2O75830 405 aa15.02□□□□□ -0.01
CSPG4-201ENST00000308508 SLC12A1Q13621 1099 aa15.02□□□□□ -0.01
CSPG4-201ENST00000308508 ZNF654Q8IZM8 581 aa15.02□□□□□ -0.01
CSPG4-201ENST00000308508 SH3GL3Q99963 347 aa15.02□□□□□ -0.01
CSPG4-201ENST00000308508 GTPBP10A4D1E9 387 aaKnown RBP15.02□□□□□ -0.01
CSPG4-201ENST00000308508 TMEM232C9JQI7 657 aa15.02□□□□□ -0.01
CSPG4-201ENST00000308508 SESTD1Q86VW0 696 aa15.02□□□□□ -0.01
CSPG4-201ENST00000308508 USP28Q96RU2 1077 aa15.02□□□□□ -0.01
CSPG4-201ENST00000308508 DBNDD2Q9BQY9 259 aa15.02□□□□□ -0.01
CSPG4-201ENST00000308508 IKBKBO14920 756 aa15.01□□□□□ -0.01
CSPG4-201ENST00000308508 PRDM1O75626 825 aa15.01□□□□□ -0.01
CSPG4-201ENST00000308508 DLATP10515 647 aaKnown RBP15.01□□□□□ -0.01
CSPG4-201ENST00000308508 BBS5Q8N3I7 341 aa15.01□□□□□ -0.01
CSPG4-201ENST00000308508 ARPP21Q9UBL0 812 aaPredicted RBP15.01□□□□□ -0.01
CSPG4-201ENST00000308508 DDX25Q9UHL0 483 aaKnown RBP15.01□□□□□ -0.01
CSPG4-201ENST00000308508 MROH5Q6ZUA9 1318 aa15.01□□□□□ -0.01
CSPG4-201ENST00000308508 PCGF5Q86SE9 256 aa15.01□□□□□ -0.01
CSPG4-201ENST00000308508 PGBD1Q96JS3 809 aa15.01□□□□□ -0.01
CSPG4-201ENST00000308508 PCDHA7Q9UN72 937 aa15.01□□□□□ -0.01
CSPG4-201ENST00000308508 PARP3Q9Y6F1 533 aa15.01□□□□□ -0.01
CSPG4-201ENST00000308508 CHEK2O96017 543 aa15.01□□□□□ -0.01
CSPG4-201ENST00000308508 ZNF532Q9HCE3 1301 aa15.01□□□□□ -0.01
CSPG4-201ENST00000308508 LAD1O00515 517 aa15.01□□□□□ -0.01
CSPG4-201ENST00000308508 MDM2Q00987 491 aaPredicted RBP15.01□□□□□ -0.01
CSPG4-201ENST00000308508 SYT2Q8N9I0 419 aaPredicted RBP15.01□□□□□ -0.01
CSPG4-201ENST00000308508 LPIN2Q92539 896 aa15.01□□□□□ -0.01
CSPG4-201ENST00000308508 WARS2Q9UGM6 360 aaKnown RBP15.01□□□□□ -0.01
CSPG4-201ENST00000308508 CHRNA2Q15822 529 aa15.01□□□□□ -0.01
CSPG4-201ENST00000308508 SPATA5Q8NB90 893 aa15.01□□□□□ -0.01
CSPG4-201ENST00000308508 SLC13A4Q9UKG4 626 aa15.01□□□□□ -0.01
CSPG4-201ENST00000308508 KIF24Q5T7B8 1368 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 FAM170AA1A519 330 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 PFKFB2O60825 505 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 AP2B1P63010 937 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 TEDDM1Q5T9Z0 273 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 DEPDC1BQ8WUY9 529 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 DHTKD1Q96HY7 919 aaPredicted RBP15□□□□□ -0.01
CSPG4-201ENST00000308508 TTC25Q96NG3 672 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 A0A1W2PQ27 194 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 A0A1W2PQ64 194 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 A0A1W2PQD8 194 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 MYO1CO00159 1063 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 CFLARO15519 480 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 RBL2Q08999 1139 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 ARMCX5Q6P1M9 558 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 RPS6KC1Q96S38 1066 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 SLC39A2Q9NP94 309 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 SNX5Q9Y5X3 404 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 ADCY1Q08828 1119 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 GNPTABQ3T906 1256 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 PARP10Q53GL7 1025 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 NEK8Q86SG6 692 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 CADPS2Q86UW7 1296 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 NOVA2Q9UNW9 492 aaKnown RBP15□□□□□ -0.01
CSPG4-201ENST00000308508 PLS3P13797 630 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 TBC1D1Q86TI0 1168 aaPredicted RBP15□□□□□ -0.01
CSPG4-201ENST00000308508 TAB3Q8N5C8 712 aaPredicted RBP15□□□□□ -0.01
CSPG4-201ENST00000308508 ARMC2Q8NEN0 867 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 ADPGKQ9BRR6 497 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 ANO3Q9BYT9 981 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 MRC2Q9UBG0 1479 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 OCRLQ01968 901 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 IDI1Q13907 227 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 SYMPKQ92797 1274 aaKnown RBP15□□□□□ -0.01
CSPG4-201ENST00000308508 TMEM191BP0C7N4 346 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 FBLN1P23142 703 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 RWDD2BP57060 319 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 SPARCL1Q14515 664 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 FSCBQ5H9T9 825 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 METTL13Q8N6R0 699 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms