RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 FAM114A2Q9NRY5 505 aa12.52□□□□□ -0.41
USP53-201ENST00000274030 SEMA3EO15041 775 aa12.52□□□□□ -0.41
USP53-201ENST00000274030 IFNAR2P48551 515 aa12.52□□□□□ -0.41
USP53-201ENST00000274030 PTK2Q05397 1052 aa12.52□□□□□ -0.41
USP53-201ENST00000274030 DPP9Q86TI2 863 aa12.52□□□□□ -0.41
USP53-201ENST00000274030 ZSWIM5Q9P217 1185 aa12.52□□□□□ -0.41
USP53-201ENST00000274030 AKT3Q9Y243 479 aa12.52□□□□□ -0.41
USP53-201ENST00000274030 CASQ2O14958 399 aaPredicted RBP12.52□□□□□ -0.41
USP53-201ENST00000274030 PPFIA4O75335 1185 aa12.52□□□□□ -0.41
USP53-201ENST00000274030 LARGE1O95461 756 aa12.52□□□□□ -0.41
USP53-201ENST00000274030 PHBP35232 272 aa12.52□□□□□ -0.41
USP53-201ENST00000274030 IL6STP40189 918 aaPredicted RBP12.52□□□□□ -0.41
USP53-201ENST00000274030 GRK7Q8WTQ7 553 aa12.52□□□□□ -0.41
USP53-201ENST00000274030 RNF26Q9BY78 433 aaPredicted RBP12.52□□□□□ -0.41
USP53-201ENST00000274030 FOXP1Q9H334 677 aaPredicted RBP12.52□□□□□ -0.41
USP53-201ENST00000274030 HOMER3Q9NSC5 361 aa12.52□□□□□ -0.41
USP53-201ENST00000274030 KLHL14Q9P2G3 628 aa12.52□□□□□ -0.41
USP53-201ENST00000274030 UBN2Q6ZU65 1347 aa12.52□□□□□ -0.41
USP53-201ENST00000274030 USP17L3A6NCW0 530 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 USP17L4A6NCW7 530 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 GSTA1P08263 222 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 GSTA2P09210 222 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 ATXN8OSP0DMR3 200 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 UBE2SQ16763 222 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 SLFNL1Q499Z3 407 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 USP17L1Q7RTZ2 530 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 BCAS4Q8TDM0 211 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 PPP4R1Q8TF05 950 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 FAM149B1Q96BN6 582 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 SMYD2Q9NRG4 433 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 NUB1Q9Y5A7 615 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 METP08581 1390 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 GOLGA8SH3BPF8 625 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 MYO1FO00160 1098 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 CIAO1O76071 339 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 ADAMTS12P58397 1594 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 OSTNP61366 133 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 YWHAGP61981 247 aaKnown RBP eCLIP12.51□□□□□ -0.41
USP53-201ENST00000274030 ERBB4Q15303 1308 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 MCTP2Q6DN12 878 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 CAPN7Q9Y6W3 813 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 EFCAB8A8MWE9 144 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 FOSP01100 380 aaPredicted RBP12.51□□□□□ -0.41
USP53-201ENST00000274030 TSTA3Q13630 321 aaPredicted RBP12.51□□□□□ -0.41
USP53-201ENST00000274030 KCTD2Q14681 263 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 ARHGEF25Q86VW2 580 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 MAGOHBQ96A72 148 aaKnown RBP12.51□□□□□ -0.41
USP53-201ENST00000274030 PPP1R13BQ96KQ4 1090 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 GSDMAQ96QA5 445 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 PDE11AQ9HCR9 933 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 SRP68Q9UHB9 627 aaKnown RBP12.51□□□□□ -0.41
USP53-201ENST00000274030 SEC31AO94979 1220 aaKnown RBP12.51□□□□□ -0.41
USP53-201ENST00000274030 BAG2O95816 211 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 SEPT6Q14141 434 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 GPATCH4Q5T3I0 446 aaKnown RBP12.51□□□□□ -0.41
USP53-201ENST00000274030 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.51□□□□□ -0.41
USP53-201ENST00000274030 FAM71BQ8TC56 605 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 SKA2Q8WVK7 121 aaPredicted RBP12.51□□□□□ -0.41
USP53-201ENST00000274030 NT5C1BQ96P26 610 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 SERPINB13Q9UIV8 391 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 TMEM94Q12767 1356 aa12.51□□□□□ -0.41
USP53-201ENST00000274030 A0A1W2PQ27 194 aa12.5□□□□□ -0.41
USP53-201ENST00000274030 A0A1W2PQ64 194 aa12.5□□□□□ -0.41
USP53-201ENST00000274030 A0A1W2PQD8 194 aa12.5□□□□□ -0.41
USP53-201ENST00000274030 MYCP01106 439 aaPredicted RBP12.5□□□□□ -0.41
USP53-201ENST00000274030 POLR2BP30876 1174 aaKnown RBP12.5□□□□□ -0.41
USP53-201ENST00000274030 KIF23Q02241 960 aaPredicted RBP12.5□□□□□ -0.41
USP53-201ENST00000274030 MKRN3Q13064 507 aaKnown RBP12.5□□□□□ -0.41
USP53-201ENST00000274030 FLAD1Q8NFF5 587 aa12.5□□□□□ -0.41
USP53-201ENST00000274030 ZNF653Q96CK0 615 aa12.5□□□□□ -0.41
USP53-201ENST00000274030 SAMSN1Q9NSI8 373 aaKnown RBP12.5□□□□□ -0.41
USP53-201ENST00000274030 LEMD3Q9Y2U8 911 aa12.5□□□□□ -0.41
USP53-201ENST00000274030 PEG3Q9GZU2 1588 aa12.5□□□□□ -0.41
USP53-201ENST00000274030 SESN3P58005 492 aa12.5□□□□□ -0.41
USP53-201ENST00000274030 RNF10Q8N5U6 811 aaKnown RBP12.5□□□□□ -0.41
USP53-201ENST00000274030 MLH3Q9UHC1 1453 aa12.5□□□□□ -0.41
USP53-201ENST00000274030 RBBP5Q15291 538 aaKnown RBP12.5□□□□□ -0.41
USP53-201ENST00000274030 ASPRV1Q53RT3 343 aa12.5□□□□□ -0.41
USP53-201ENST00000274030 NLRP10Q86W26 655 aa12.5□□□□□ -0.41
USP53-201ENST00000274030 FAM186BQ8IYM0 893 aa12.5□□□□□ -0.41
USP53-201ENST00000274030 P2RX5Q93086 422 aa12.5□□□□□ -0.41
USP53-201ENST00000274030 CAPS2Q9BXY5 557 aa12.5□□□□□ -0.41
USP53-201ENST00000274030 SGK1O00141 431 aa12.5□□□□□ -0.41
USP53-201ENST00000274030 CCDC38Q502W7 563 aa12.5□□□□□ -0.41
USP53-201ENST00000274030 MCUQ8NE86 351 aa12.5□□□□□ -0.41
USP53-201ENST00000274030 SLC7A3Q8WY07 619 aa12.5□□□□□ -0.41
USP53-201ENST00000274030 CEP170P1Q96L14 293 aa12.5□□□□□ -0.41
USP53-201ENST00000274030 CCDC17Q96LX7 622 aa12.5□□□□□ -0.41
USP53-201ENST00000274030 HAUS2Q9NVX0 235 aa12.5□□□□□ -0.41
USP53-201ENST00000274030 PPP6R2O75170 966 aa12.5□□□□□ -0.41
USP53-201ENST00000274030 DYNLT1P63172 113 aa12.5□□□□□ -0.41
USP53-201ENST00000274030 RFX6Q8HWS3 928 aa12.5□□□□□ -0.41
USP53-201ENST00000274030 FAM133AQ8N9E0 248 aa12.5□□□□□ -0.41
USP53-201ENST00000274030 PCDHB6Q9Y5E3 794 aa12.5□□□□□ -0.41
USP53-201ENST00000274030 H0YCG3 227 aa12.49□□□□□ -0.41
USP53-201ENST00000274030 PTPN12Q05209 780 aaKnown RBP12.49□□□□□ -0.41
USP53-201ENST00000274030 AOC3Q16853 763 aa12.49□□□□□ -0.41
USP53-201ENST00000274030 FAM160B1Q5W0V3 765 aa12.49□□□□□ -0.41
USP53-201ENST00000274030 C7orf31Q8N865 590 aa12.49□□□□□ -0.41
USP53-201ENST00000274030 ACRBPQ8NEB7 543 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms