RNA–Protein interactions for RNA: ENST00000475835.2

LSM2-211, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 5

Gene LSM2, Length 211 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM2-211	ENST00000475835	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	5.07	□□□□□ -1.6
LSM2-211	ENST00000475835	CCDC27	Q2M243	656 aa		5.06	□□□□□ -1.6
LSM2-211	ENST00000475835	UTP14C	Q5TAP6	766 aa	Known RBP	5.06	□□□□□ -1.6
LSM2-211	ENST00000475835	NBPF11	Q86T75	865 aa		5.06	□□□□□ -1.6
LSM2-211	ENST00000475835	WIZ	O95785	1651 aa		5.05	□□□□□ -1.6
LSM2-211	ENST00000475835	NACAD	O15069	1562 aa		5.05	□□□□□ -1.6
LSM2-211	ENST00000475835	TTC36	A6NLP5	189 aa		5.05	□□□□□ -1.6
LSM2-211	ENST00000475835	PATL2	C9JE40	543 aa	Known RBP	5.05	□□□□□ -1.6
LSM2-211	ENST00000475835	SLC20A2	Q08357	652 aa		5.05	□□□□□ -1.6
LSM2-211	ENST00000475835	NBPF1	Q3BBV0	1214 aa		5.05	□□□□□ -1.6
LSM2-211	ENST00000475835	FAM43B	Q6ZT52	329 aa	Predicted RBP	5.05	□□□□□ -1.6
LSM2-211	ENST00000475835	SMAP1	Q8IYB5	467 aa	Predicted RBP	5.05	□□□□□ -1.6
LSM2-211	ENST00000475835	PHF23	Q9BUL5	403 aa	Predicted RBP	5.05	□□□□□ -1.6
LSM2-211	ENST00000475835	PDCL3	Q9H2J4	239 aa		5.05	□□□□□ -1.6
LSM2-211	ENST00000475835	ZNF316	A6NFI3	1004 aa	Predicted RBP	5.04	□□□□□ -1.6
LSM2-211	ENST00000475835	OS9	Q13438	667 aa	Predicted RBP	5.04	□□□□□ -1.6
LSM2-211	ENST00000475835	FAM177A1	Q8N128	213 aa	Predicted RBP	5.04	□□□□□ -1.6
LSM2-211	ENST00000475835	NECTIN2	Q92692	538 aa		5.04	□□□□□ -1.6
LSM2-211	ENST00000475835	MAP7D2	Q96T17	732 aa		5.04	□□□□□ -1.6
LSM2-211	ENST00000475835	HDAC5	Q9UQL6	1122 aa		5.04	□□□□□ -1.6
LSM2-211	ENST00000475835	EIF4G1	Q04637	1599 aa	Known RBP	5.04	□□□□□ -1.6
LSM2-211	ENST00000475835	PLEKHD1	A6NEE1	506 aa		5.03	□□□□□ -1.6
LSM2-211	ENST00000475835	CASC1	Q6TDU7	716 aa		5.03	□□□□□ -1.6
LSM2-211	ENST00000475835	ZNF526	Q8TF50	670 aa	Predicted RBP	5.03	□□□□□ -1.6
LSM2-211	ENST00000475835	YY1AP1	Q9H869	796 aa		5.03	□□□□□ -1.6
LSM2-211	ENST00000475835	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	5.03	□□□□□ -1.6
LSM2-211	ENST00000475835	NRDC	O43847	1150 aa		5.02	□□□□□ -1.61
LSM2-211	ENST00000475835	RAD21	O60216	631 aa		5.02	□□□□□ -1.61
LSM2-211	ENST00000475835	CC2D1B	Q5T0F9	858 aa	Known RBP	5.02	□□□□□ -1.61
LSM2-211	ENST00000475835	EXOC8	Q8IYI6	725 aa		5.02	□□□□□ -1.61
LSM2-211	ENST00000475835	MROH2B	Q7Z745	1585 aa		5.01	□□□□□ -1.61
LSM2-211	ENST00000475835	APP	P05067	770 aa		5.01	□□□□□ -1.61
LSM2-211	ENST00000475835	PSEN1	P49768	467 aa		5.01	□□□□□ -1.61
LSM2-211	ENST00000475835	NBPF9	Q3BBW0	867 aa		5.01	□□□□□ -1.61
LSM2-211	ENST00000475835	GOLGA6L3	A6NEY3	463 aa		5	□□□□□ -1.61
LSM2-211	ENST00000475835	KIF20A	O95235	890 aa		5	□□□□□ -1.61
LSM2-211	ENST00000475835	TPM2	P07951	284 aa		5	□□□□□ -1.61
LSM2-211	ENST00000475835	FKBP8	Q14318	412 aa		5	□□□□□ -1.61
LSM2-211	ENST00000475835	RALBP1	Q15311	655 aa		5	□□□□□ -1.61
LSM2-211	ENST00000475835	TMEM51	Q9NW97	253 aa		5	□□□□□ -1.61
LSM2-211	ENST00000475835	TCERG1	O14776	1098 aa	Known RBP	4.99	□□□□□ -1.61
LSM2-211	ENST00000475835	TNNT2	P45379	298 aa	Predicted RBP	4.99	□□□□□ -1.61
LSM2-211	ENST00000475835	RGS3	P49796	1198 aa		4.99	□□□□□ -1.61
LSM2-211	ENST00000475835	HSP90AB3P	Q58FF7	597 aa		4.99	□□□□□ -1.61
LSM2-211	ENST00000475835	TSHZ1	Q6ZSZ6	1077 aa		4.99	□□□□□ -1.61
LSM2-211	ENST00000475835	MTERF4	Q7Z6M4	381 aa	Known RBP	4.99	□□□□□ -1.61
LSM2-211	ENST00000475835	EGFL6	Q8IUX8	553 aa		4.99	□□□□□ -1.61
LSM2-211	ENST00000475835	KCTD17	Q8N5Z5	321 aa		4.99	□□□□□ -1.61
LSM2-211	ENST00000475835	ZNF830	Q96NB3	372 aa	Predicted RBP	4.99	□□□□□ -1.61
LSM2-211	ENST00000475835	CARD10	Q9BWT7	1032 aa		4.99	□□□□□ -1.61
LSM2-211	ENST00000475835	TOP2A	P11388	1531 aa	Known RBP	4.98	□□□□□ -1.61
LSM2-211	ENST00000475835	SETDB1	Q15047	1291 aa		4.98	□□□□□ -1.61
LSM2-211	ENST00000475835	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	4.98	□□□□□ -1.61
LSM2-211	ENST00000475835	BSDC1	Q9NW68	430 aa	Predicted RBP	4.98	□□□□□ -1.61
LSM2-211	ENST00000475835	GEMIN8	Q9NWZ8	242 aa	Known RBP	4.98	□□□□□ -1.61
LSM2-211	ENST00000475835	CECR2	Q9BXF3	1484 aa		4.98	□□□□□ -1.61
LSM2-211	ENST00000475835		E9PSI1	815 aa		4.97	□□□□□ -1.61
LSM2-211	ENST00000475835	CALR	P27797	417 aa	Known RBP	4.97	□□□□□ -1.61
LSM2-211	ENST00000475835	TMTC2	Q8N394	836 aa		4.97	□□□□□ -1.61
LSM2-211	ENST00000475835	OTUD6B	Q8N6M0	293 aa		4.97	□□□□□ -1.61
LSM2-211	ENST00000475835	MKL1	Q969V6	931 aa		4.97	□□□□□ -1.61
LSM2-211	ENST00000475835	LOC102724159	A0A0B4J2E5	919 aa		4.96	□□□□□ -1.62
LSM2-211	ENST00000475835	SSR1	P43307	286 aa	Known RBP	4.96	□□□□□ -1.62
LSM2-211	ENST00000475835	RBM25	P49756	843 aa	Known RBP	4.96	□□□□□ -1.62
LSM2-211	ENST00000475835	PWP2	Q15269	919 aa	Known RBP	4.96	□□□□□ -1.62
LSM2-211	ENST00000475835	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	4.96	□□□□□ -1.62
LSM2-211	ENST00000475835	RAI14	Q9P0K7	980 aa		4.96	□□□□□ -1.62
LSM2-211	ENST00000475835	SMARCA4	P51532	1647 aa		4.96	□□□□□ -1.62
LSM2-211	ENST00000475835	WRN	Q14191	1432 aa	Predicted RBP eCLIP	4.96	□□□□□ -1.62
LSM2-211	ENST00000475835	ABCC8	Q09428	1581 aa		4.95	□□□□□ -1.62
LSM2-211	ENST00000475835	CADPS	Q9ULU8	1353 aa		4.95	□□□□□ -1.62
LSM2-211	ENST00000475835	HMGB1P1	B2RPK0	211 aa	Predicted RBP	4.95	□□□□□ -1.62
LSM2-211	ENST00000475835	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	4.95	□□□□□ -1.62
LSM2-211	ENST00000475835	GOLIM4	O00461	696 aa		4.95	□□□□□ -1.62
LSM2-211	ENST00000475835	KDM4A	O75164	1064 aa		4.95	□□□□□ -1.62
LSM2-211	ENST00000475835	ERCC3	P19447	782 aa		4.95	□□□□□ -1.62
LSM2-211	ENST00000475835	TERF2IP	Q9NYB0	399 aa		4.95	□□□□□ -1.62
LSM2-211	ENST00000475835	MTMR7	Q9Y216	660 aa		4.95	□□□□□ -1.62
LSM2-211	ENST00000475835	CEP162	Q5TB80	1403 aa		4.95	□□□□□ -1.62
LSM2-211	ENST00000475835	SMARCA2	P51531	1590 aa		4.95	□□□□□ -1.62
LSM2-211	ENST00000475835	LETM1	O95202	739 aa	Predicted RBP	4.94	□□□□□ -1.62
LSM2-211	ENST00000475835	DMTN	Q08495	405 aa		4.94	□□□□□ -1.62
LSM2-211	ENST00000475835	HDAC1	Q13547	482 aa	Predicted RBP	4.94	□□□□□ -1.62
LSM2-211	ENST00000475835	FAM50A	Q14320	339 aa	Known RBP	4.94	□□□□□ -1.62
LSM2-211	ENST00000475835	NBPF6	Q5VWK0	638 aa		4.94	□□□□□ -1.62
LSM2-211	ENST00000475835	NBPF10	Q6P3W6	841 aa	Known RBP	4.94	□□□□□ -1.62
LSM2-211	ENST00000475835	RINL	Q6ZS11	566 aa		4.94	□□□□□ -1.62
LSM2-211	ENST00000475835	NBPF5P	Q86XG9	351 aa	Predicted RBP	4.94	□□□□□ -1.62
LSM2-211	ENST00000475835	CCDC125	Q86Z20	511 aa		4.94	□□□□□ -1.62
LSM2-211	ENST00000475835	NBPF4	Q96M43	638 aa		4.94	□□□□□ -1.62
LSM2-211	ENST00000475835	RBM28	Q9NW13	759 aa	Known RBP	4.94	□□□□□ -1.62
LSM2-211	ENST00000475835	SLC52A1	Q9NWF4	448 aa		4.94	□□□□□ -1.62
LSM2-211	ENST00000475835	FEZ2	Q9UHY8	353 aa	Predicted RBP	4.94	□□□□□ -1.62
LSM2-211	ENST00000475835	SH3BP1	Q9Y3L3	701 aa		4.94	□□□□□ -1.62
LSM2-211	ENST00000475835	EEA1	Q15075	1411 aa		4.94	□□□□□ -1.62
LSM2-211	ENST00000475835	MYCN	P04198	464 aa	Predicted RBP	4.93	□□□□□ -1.62
LSM2-211	ENST00000475835	PRDM2	Q13029	1718 aa		4.93	□□□□□ -1.62
LSM2-211	ENST00000475835	PPP4R3B	Q5MIZ7	849 aa		4.93	□□□□□ -1.62
LSM2-211	ENST00000475835	SPTY2D1	Q68D10	685 aa	Predicted RBP	4.93	□□□□□ -1.62
LSM2-211	ENST00000475835	DDRGK1	Q96HY6	314 aa		4.93	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms