RNA–Protein interactions for RNA: ENST00000466274.1

NCL-208, Transcript of nucleolin, humanhuman

TSL 2

Gene NCL, Length 671 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCL-208ENST00000466274 PHF8Q9UPP1 1060 aa12.05□□□□□ -0.48
NCL-208ENST00000466274 PKD2Q13563 968 aa12.04□□□□□ -0.48
NCL-208ENST00000466274 MS4A4AQ96JQ5 239 aa12.04□□□□□ -0.48
NCL-208ENST00000466274 TMEM121BQ9BXQ6 578 aaPredicted RBP12.04□□□□□ -0.48
NCL-208ENST00000466274 BCL11BQ9C0K0 894 aaPredicted RBP12.03□□□□□ -0.48
NCL-208ENST00000466274 NESP48681 1621 aa12.02□□□□□ -0.49
NCL-208ENST00000466274 TAOK2Q9UL54 1235 aa12□□□□□ -0.49
NCL-208ENST00000466274 STK24Q9Y6E0 443 aa12□□□□□ -0.49
NCL-208ENST00000466274 RGL2O15211 777 aa11.99□□□□□ -0.49
NCL-208ENST00000466274 MICALL2Q8IY33 904 aa11.99□□□□□ -0.49
NCL-208ENST00000466274 ATAD2BQ9ULI0 1458 aa11.97□□□□□ -0.49
NCL-208ENST00000466274 STK25O00506 426 aa11.97□□□□□ -0.49
NCL-208ENST00000466274 THOC2Q8NI27 1593 aaKnown RBP11.96□□□□□ -0.49
NCL-208ENST00000466274 PDS5BQ9NTI5 1447 aa11.96□□□□□ -0.49
NCL-208ENST00000466274 HOXB3P14651 431 aaPredicted RBP11.95□□□□□ -0.5
NCL-208ENST00000466274 TMEM92Q6UXU6 159 aa11.94□□□□□ -0.5
NCL-208ENST00000466274 EMP3P54852 163 aa11.93□□□□□ -0.5
NCL-208ENST00000466274 NLRP6P59044 892 aa11.93□□□□□ -0.5
NCL-208ENST00000466274 FBXO22Q8NEZ5 403 aa11.93□□□□□ -0.5
NCL-208ENST00000466274 HMGXB3Q12766 1538 aa11.91□□□□□ -0.5
NCL-208ENST00000466274 MFRPQ9BY79 579 aa11.91□□□□□ -0.5
NCL-208ENST00000466274 SMARCA2P51531 1590 aa11.91□□□□□ -0.5
NCL-208ENST00000466274 LAMC3Q9Y6N6 1575 aa11.88□□□□□ -0.51
NCL-208ENST00000466274 POTEB3A0JP26 581 aa11.88□□□□□ -0.51
NCL-208ENST00000466274 POTEBQ6S5H4 581 aa11.88□□□□□ -0.51
NCL-208ENST00000466274 FAM205CA6NFA0 338 aa11.87□□□□□ -0.51
NCL-208ENST00000466274 ZNF710Q8N1W2 664 aa11.87□□□□□ -0.51
NCL-208ENST00000466274 DOK7Q18PE1 504 aa11.86□□□□□ -0.51
NCL-208ENST00000466274 HS3ST6Q96QI5 342 aa11.84□□□□□ -0.51
NCL-208ENST00000466274 BAZ1BQ9UIG0 1483 aaKnown RBP11.83□□□□□ -0.52
NCL-208ENST00000466274 HOXB1P14653 301 aaPredicted RBP11.82□□□□□ -0.52
NCL-208ENST00000466274 BAZ1AQ9NRL2 1556 aaPredicted RBP11.81□□□□□ -0.52
NCL-208ENST00000466274 MRC2Q9UBG0 1479 aa11.81□□□□□ -0.52
NCL-208ENST00000466274 RIMBP2O15034 1052 aa11.77□□□□□ -0.53
NCL-208ENST00000466274 CADPSQ9ULU8 1353 aa11.77□□□□□ -0.53
NCL-208ENST00000466274 SPNS2Q8IVW8 549 aa11.76□□□□□ -0.53
NCL-208ENST00000466274 CYB5RLQ6IPT4 315 aa11.75□□□□□ -0.53
NCL-208ENST00000466274 WDR62O43379 1518 aa11.75□□□□□ -0.53
NCL-208ENST00000466274 PPP1R37O75864 691 aa11.74□□□□□ -0.53
NCL-208ENST00000466274 KRTAP3-3Q9BYR6 98 aa11.74□□□□□ -0.53
NCL-208ENST00000466274 KRTAP3-2Q9BYR7 98 aa11.74□□□□□ -0.53
NCL-208ENST00000466274 ERBB3P21860 1342 aa11.74□□□□□ -0.53
NCL-208ENST00000466274 GPR153Q6NV75 609 aa11.72□□□□□ -0.53
NCL-208ENST00000466274 KIF21AQ7Z4S6 1674 aa11.71□□□□□ -0.53
NCL-208ENST00000466274 C2orf72A6NCS6 295 aa11.71□□□□□ -0.53
NCL-208ENST00000466274 ZSWIM6Q9HCJ5 1215 aa11.71□□□□□ -0.53
NCL-208ENST00000466274 SMARCA4P51532 1647 aa11.71□□□□□ -0.54
NCL-208ENST00000466274 KIF3CO14782 793 aa11.7□□□□□ -0.54
NCL-208ENST00000466274 MMRN1Q13201 1228 aa11.7□□□□□ -0.54
NCL-208ENST00000466274 ARSIQ5FYB1 569 aa11.7□□□□□ -0.54
NCL-208ENST00000466274 HS6ST3Q8IZP7 471 aa11.7□□□□□ -0.54
NCL-208ENST00000466274 RIMBP3CA6NJZ7 1639 aa11.7□□□□□ -0.54
NCL-208ENST00000466274 RIMBP3BA6NNM3 1639 aa11.7□□□□□ -0.54
NCL-208ENST00000466274 RIMBP3Q9UFD9 1639 aa11.7□□□□□ -0.54
NCL-208ENST00000466274 CHGAP10645 457 aaKnown RBP11.69□□□□□ -0.54
NCL-208ENST00000466274 VARS2Q5ST30 1063 aaKnown RBP11.68□□□□□ -0.54
NCL-208ENST00000466274 ARHGEF11O15085 1522 aa11.67□□□□□ -0.54
NCL-208ENST00000466274 KHSRPQ92945 711 aaKnown RBP eCLIP11.67□□□□□ -0.544e-11■■■■□ 26.7
NCL-208ENST00000466274 CEP164Q9UPV0 1460 aa11.65□□□□□ -0.54
NCL-208ENST00000466274 TMC2Q8TDI7 906 aa11.63□□□□□ -0.55
NCL-208ENST00000466274 PEG3Q9GZU2 1588 aa11.62□□□□□ -0.55
NCL-208ENST00000466274 NKX1-1Q15270 411 aaPredicted RBP11.59□□□□□ -0.55
NCL-208ENST00000466274 ZNF687Q8N1G0 1237 aa11.58□□□□□ -0.56
NCL-208ENST00000466274 FANCD2Q9BXW9 1451 aa11.57□□□□□ -0.56
NCL-208ENST00000466274 ZNF316A6NFI3 1004 aaPredicted RBP11.56□□□□□ -0.56
NCL-208ENST00000466274 NUDT7P0C024 238 aa11.56□□□□□ -0.56
NCL-208ENST00000466274 PCDHGA4Q9Y5G9 962 aa11.55□□□□□ -0.56
NCL-208ENST00000466274 SLC34A2O95436 690 aa11.54□□□□□ -0.56
NCL-208ENST00000466274 ARAP1Q96P48 1450 aa11.51□□□□□ -0.57
NCL-208ENST00000466274 GPHNQ9NQX3 736 aaPredicted RBP11.49□□□□□ -0.57
NCL-208ENST00000466274 LHX6Q9UPM6 363 aa11.49□□□□□ -0.57
NCL-208ENST00000466274 PLPP6Q8IY26 295 aa11.48□□□□□ -0.57
NCL-208ENST00000466274 RSF1Q96T23 1441 aaPredicted RBP11.48□□□□□ -0.57
NCL-208ENST00000466274 IFT140Q96RY7 1462 aa11.47□□□□□ -0.57
NCL-208ENST00000466274 FOXK1P85037 733 aa11.47□□□□□ -0.57
NCL-208ENST00000466274 DSG2Q14126 1118 aa11.47□□□□□ -0.57
NCL-208ENST00000466274 MROH2BQ7Z745 1585 aa11.46□□□□□ -0.57
NCL-208ENST00000466274 URB2Q14146 1524 aaKnown RBP11.45□□□□□ -0.58
NCL-208ENST00000466274 CFTRP13569 1480 aa11.45□□□□□ -0.58
NCL-208ENST00000466274 ANKRD13DQ6ZTN6 518 aa11.45□□□□□ -0.58
NCL-208ENST00000466274 PTCD2Q8WV60 388 aaKnown RBP11.43□□□□□ -0.58
NCL-208ENST00000466274 RYDENQ9NUL5 291 aaKnown RBP11.43□□□□□ -0.58
NCL-208ENST00000466274 ZNF608Q9ULD9 1512 aaPredicted RBP11.43□□□□□ -0.58
NCL-208ENST00000466274 GTPBP6O43824 516 aaPredicted RBP11.41□□□□□ -0.58
NCL-208ENST00000466274 AXIN2Q9Y2T1 843 aa11.41□□□□□ -0.58
NCL-208ENST00000466274 KDM4FA0A1W2PPD8 638 aa11.4□□□□□ -0.58
NCL-208ENST00000466274 POTEEQ6S8J3 1075 aa11.4□□□□□ -0.58
NCL-208ENST00000466274 LSM11P83369 360 aaKnown RBP eCLIP11.39□□□□□ -0.59
NCL-208ENST00000466274 RNF166Q96A37 237 aaPredicted RBP11.39□□□□□ -0.59
NCL-208ENST00000466274 MYT1LQ9UL68 1186 aa11.39□□□□□ -0.59
NCL-208ENST00000466274 CRISPLD2Q9H0B8 497 aa11.37□□□□□ -0.59
NCL-208ENST00000466274 PBX2P40425 430 aa11.35□□□□□ -0.59
NCL-208ENST00000466274 NCKAP5LQ9HCH0 1330 aa11.35□□□□□ -0.59
NCL-208ENST00000466274 TBC1D12O60347 775 aa11.34□□□□□ -0.59
NCL-208ENST00000466274 UPF1Q92900 1129 aaKnown RBP eCLIP11.33□□□□□ -0.6
NCL-208ENST00000466274 PPP1R15BQ5SWA1 713 aa11.32□□□□□ -0.6
NCL-208ENST00000466274 PSDA5PKW4 1024 aaPredicted RBP11.31□□□□□ -0.6
NCL-208ENST00000466274 PDE4AP27815 886 aa11.31□□□□□ -0.6
NCL-208ENST00000466274 PTGER2P43116 358 aa11.31□□□□□ -0.6
NCL-208ENST00000466274 OXER1Q8TDS5 423 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms