RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 KIF3AQ9Y496 699 aa16.74■□□□□ 0.27
USP49-203ENST00000394253 PDE4CQ08493 712 aa16.74■□□□□ 0.27
USP49-203ENST00000394253 ACBD3Q9H3P7 528 aa16.74■□□□□ 0.27
USP49-203ENST00000394253 TPM2P07951 284 aa16.74■□□□□ 0.27
USP49-203ENST00000394253 TAF7LQ5H9L4 462 aa16.73■□□□□ 0.27
USP49-203ENST00000394253 RUFY1Q96T51 708 aa16.73■□□□□ 0.27
USP49-203ENST00000394253 CCAR2Q8N163 923 aaKnown RBP16.73■□□□□ 0.27
USP49-203ENST00000394253 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.73■□□□□ 0.27
USP49-203ENST00000394253 GPATCH3Q96I76 525 aa16.72■□□□□ 0.27
USP49-203ENST00000394253 RASSF8Q8NHQ8 419 aa16.72■□□□□ 0.27
USP49-203ENST00000394253 CCDC66A2RUB6 948 aa16.71■□□□□ 0.27
USP49-203ENST00000394253 GOLGA6L19H0YKK7 550 aa16.71■□□□□ 0.27
USP49-203ENST00000394253 ARID3CA6NKF2 412 aa16.71■□□□□ 0.26
USP49-203ENST00000394253 KIF16BQ96L93 1317 aa16.7■□□□□ 0.26
USP49-203ENST00000394253 IPO7O95373 1038 aaKnown RBP16.7■□□□□ 0.26
USP49-203ENST00000394253 PPP1R15AO75807 674 aaPredicted RBP16.68■□□□□ 0.26
USP49-203ENST00000394253 ARGLU1Q9NWB6 273 aaPredicted RBP16.68■□□□□ 0.26
USP49-203ENST00000394253 RBM19Q9Y4C8 960 aaKnown RBP16.68■□□□□ 0.26
USP49-203ENST00000394253 P3H3Q8IVL6 736 aa16.68■□□□□ 0.26
USP49-203ENST00000394253 HSP90B2PQ58FF3 399 aa16.68■□□□□ 0.26
USP49-203ENST00000394253 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.68■□□□□ 0.26
USP49-203ENST00000394253 TPD52L1Q16890 204 aaPredicted RBP16.68■□□□□ 0.26
USP49-203ENST00000394253 TCERG1O14776 1098 aaKnown RBP16.67■□□□□ 0.26
USP49-203ENST00000394253 H0YHG0 523 aa16.67■□□□□ 0.26
USP49-203ENST00000394253 TSPY4P0CV99 314 aa16.67■□□□□ 0.26
USP49-203ENST00000394253 TSPY10P0CW01 314 aa16.67■□□□□ 0.26
USP49-203ENST00000394253 B4GALNT3Q6L9W6 998 aa16.66■□□□□ 0.26
USP49-203ENST00000394253 PLPPR3Q6T4P5 718 aa16.66■□□□□ 0.26
USP49-203ENST00000394253 ATP6V1DQ9Y5K8 247 aa16.66■□□□□ 0.26
USP49-203ENST00000394253 CREBRFQ8IUR6 639 aa16.66■□□□□ 0.26
USP49-203ENST00000394253 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.66■□□□□ 0.26
USP49-203ENST00000394253 NEXNQ0ZGT2 675 aa16.65■□□□□ 0.26
USP49-203ENST00000394253 IPO8O15397 1037 aaKnown RBP16.65■□□□□ 0.26
USP49-203ENST00000394253 SKOR2Q2VWA4 1001 aaPredicted RBP16.65■□□□□ 0.26
USP49-203ENST00000394253 SLKQ9H2G2 1235 aaPredicted RBP16.65■□□□□ 0.26
USP49-203ENST00000394253 CHMP4CQ96CF2 233 aa16.64■□□□□ 0.25
USP49-203ENST00000394253 PES1O00541 588 aaKnown RBP16.64■□□□□ 0.25
USP49-203ENST00000394253 KRI1Q8N9T8 703 aaKnown RBP16.64■□□□□ 0.25
USP49-203ENST00000394253 ZRSR2Q15696 482 aaKnown RBP16.63■□□□□ 0.25
USP49-203ENST00000394253 ST18O60284 1047 aa16.63■□□□□ 0.25
USP49-203ENST00000394253 NPM1P06748 294 aaKnown RBP eCLIP16.63■□□□□ 0.25
USP49-203ENST00000394253 NEFHP12036 1026 aa16.63■□□□□ 0.25
USP49-203ENST00000394253 INCENPQ9NQS7 918 aa16.62■□□□□ 0.25
USP49-203ENST00000394253 DYDC1Q8WWB3 177 aa16.61■□□□□ 0.25
USP49-203ENST00000394253 ANKRD20A12PQ8NF67 263 aa16.6■□□□□ 0.25
USP49-203ENST00000394253 MYO6Q9UM54 1294 aa16.6■□□□□ 0.25
USP49-203ENST00000394253 IPO9Q96P70 1041 aaKnown RBP16.6■□□□□ 0.25
USP49-203ENST00000394253 NEUROD2Q15784 382 aa16.6■□□□□ 0.25
USP49-203ENST00000394253 MEX3CQ5U5Q3 659 aaKnown RBP16.6■□□□□ 0.25
USP49-203ENST00000394253 MTUS2Q5JR59 1369 aa16.59■□□□□ 0.25
USP49-203ENST00000394253 CHMP4AQ9BY43 222 aa16.58■□□□□ 0.25
USP49-203ENST00000394253 BECN2A8MW95 431 aa16.58■□□□□ 0.25
USP49-203ENST00000394253 CAGE1Q8TC20 777 aa16.58■□□□□ 0.24
USP49-203ENST00000394253 FBXO3Q9UK99 471 aa16.57■□□□□ 0.24
USP49-203ENST00000394253 HOOK1Q9UJC3 728 aaKnown RBP16.56■□□□□ 0.24
USP49-203ENST00000394253 FAM13BQ9NYF5 915 aa16.56■□□□□ 0.24
USP49-203ENST00000394253 SF3A1Q15459 793 aaKnown RBP16.56■□□□□ 0.24
USP49-203ENST00000394253 CSRNP3Q8WYN3 585 aa16.56■□□□□ 0.24
USP49-203ENST00000394253 RWDD1Q9H446 243 aaPredicted RBP16.56■□□□□ 0.24
USP49-203ENST00000394253 HDAC5Q9UQL6 1122 aa16.55■□□□□ 0.24
USP49-203ENST00000394253 GOLGA6L7A0A1B0GV03 622 aa16.55■□□□□ 0.24
USP49-203ENST00000394253 PKNOX2Q96KN3 472 aa16.54■□□□□ 0.24
USP49-203ENST00000394253 PODXL2Q9NZ53 605 aa16.54■□□□□ 0.24
USP49-203ENST00000394253 ZNF592Q92610 1267 aa16.54■□□□□ 0.24
USP49-203ENST00000394253 HOMER1Q86YM7 354 aa16.54■□□□□ 0.24
USP49-203ENST00000394253 TAF3Q5VWG9 929 aa16.53■□□□□ 0.24
USP49-203ENST00000394253 ERCC4Q92889 916 aaPredicted RBP16.53■□□□□ 0.24
USP49-203ENST00000394253 TMX4Q9H1E5 349 aaPredicted RBP16.53■□□□□ 0.24
USP49-203ENST00000394253 CHIC2Q9UKJ5 165 aa16.52■□□□□ 0.24
USP49-203ENST00000394253 CCDC173Q0VFZ6 552 aa16.52■□□□□ 0.24
USP49-203ENST00000394253 PMFBP1Q8TBY8 1022 aa16.52■□□□□ 0.24
USP49-203ENST00000394253 PLEKHG5O94827 1062 aa16.52■□□□□ 0.23
USP49-203ENST00000394253 GSE1Q14687 1217 aa16.52■□□□□ 0.23
USP49-203ENST00000394253 LEKR1Q6ZMV7 388 aa16.51■□□□□ 0.23
USP49-203ENST00000394253 USP8P40818 1118 aa16.51■□□□□ 0.23
USP49-203ENST00000394253 H3BQV1 296 aa16.51■□□□□ 0.23
USP49-203ENST00000394253 IFFO2Q5TF58 517 aa16.51■□□□□ 0.23
USP49-203ENST00000394253 HIRIP3Q9BW71 556 aaPredicted RBP16.51■□□□□ 0.23
USP49-203ENST00000394253 HSP90AB3PQ58FF7 597 aa16.5■□□□□ 0.23
USP49-203ENST00000394253 DIAPH3Q9NSV4 1193 aa16.49■□□□□ 0.23
USP49-203ENST00000394253 RSF1Q96T23 1441 aaPredicted RBP16.48■□□□□ 0.23
USP49-203ENST00000394253 U2SURPO15042 1029 aaKnown RBP16.47■□□□□ 0.23
USP49-203ENST00000394253 MARCH6O60337 910 aa16.47■□□□□ 0.23
USP49-203ENST00000394253 RTF1Q92541 710 aaKnown RBP16.47■□□□□ 0.23
USP49-203ENST00000394253 TRIM6-TRIM34B2RNG4 842 aa16.47■□□□□ 0.23
USP49-203ENST00000394253 FAM43AQ8N2R8 423 aa16.47■□□□□ 0.23
USP49-203ENST00000394253 ODF2Q5BJF6 829 aa16.47■□□□□ 0.23
USP49-203ENST00000394253 VPS53Q5VIR6 699 aa16.47■□□□□ 0.23
USP49-203ENST00000394253 CARD11Q9BXL7 1154 aa16.46■□□□□ 0.23
USP49-203ENST00000394253 TCEAL9Q9UHQ7 104 aa16.46■□□□□ 0.23
USP49-203ENST00000394253 PLCD4Q9BRC7 762 aa16.46■□□□□ 0.23
USP49-203ENST00000394253 MNS1Q8NEH6 495 aa16.46■□□□□ 0.22
USP49-203ENST00000394253 GORABQ5T7V8 394 aa16.45■□□□□ 0.22
USP49-203ENST00000394253 DEF6Q9H4E7 631 aa16.44■□□□□ 0.22
USP49-203ENST00000394253 KIAA0754O94854 1291 aa16.44■□□□□ 0.22
USP49-203ENST00000394253 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.44■□□□□ 0.228e-7■■■■■ 91.3
USP49-203ENST00000394253 DDX49Q9Y6V7 483 aaKnown RBP16.43■□□□□ 0.22
USP49-203ENST00000394253 PCMTD1Q96MG8 357 aaPredicted RBP16.43■□□□□ 0.22
USP49-203ENST00000394253 CT47A1Q5JQC4 288 aaPredicted RBP16.43■□□□□ 0.22
USP49-203ENST00000394253 MFAP1P55081 439 aaKnown RBP16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms