RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 SYNJ1O43426 1573 aa10.93□□□□□ -0.66
USP48-203ENST00000374732 C1orf115Q9H7X2 142 aa10.92□□□□□ -0.66
USP48-203ENST00000374732 IL27Q8NEV9 243 aa10.91□□□□□ -0.66
USP48-203ENST00000374732 FOXD1Q16676 465 aa10.9□□□□□ -0.66
USP48-203ENST00000374732 FOXD4L5Q5VV16 416 aaPredicted RBP10.9□□□□□ -0.66
USP48-203ENST00000374732 FOXD4L4Q8WXT5 416 aaPredicted RBP10.9□□□□□ -0.66
USP48-203ENST00000374732 CHD1O14646 1710 aa10.9□□□□□ -0.66
USP48-203ENST00000374732 RBM25P49756 843 aaKnown RBP10.9□□□□□ -0.66
USP48-203ENST00000374732 NBR1Q14596 966 aa10.9□□□□□ -0.66
USP48-203ENST00000374732 USP35Q9P2H5 1018 aa10.9□□□□□ -0.66
USP48-203ENST00000374732 FAM177A1Q8N128 213 aaPredicted RBP10.9□□□□□ -0.67
USP48-203ENST00000374732 PPM1GO15355 546 aaPredicted RBP10.89□□□□□ -0.67
USP48-203ENST00000374732 RAD21O60216 631 aa10.89□□□□□ -0.67
USP48-203ENST00000374732 PATL2C9JE40 543 aaKnown RBP10.88□□□□□ -0.67
USP48-203ENST00000374732 NPM1P06748 294 aaKnown RBP eCLIP10.87□□□□□ -0.67
USP48-203ENST00000374732 PTMSP20962 102 aa10.87□□□□□ -0.67
USP48-203ENST00000374732 CANXP27824 592 aaKnown RBP10.87□□□□□ -0.67
USP48-203ENST00000374732 OS9Q13438 667 aaPredicted RBP10.87□□□□□ -0.67
USP48-203ENST00000374732 SHROOM2Q13796 1616 aa10.85□□□□□ -0.67
USP48-203ENST00000374732 GRIPAP1Q4V328 841 aa10.85□□□□□ -0.67
USP48-203ENST00000374732 MTMR7Q9Y216 660 aa10.85□□□□□ -0.67
USP48-203ENST00000374732 KCTD17Q8N5Z5 321 aa10.84□□□□□ -0.67
USP48-203ENST00000374732 ABCA5Q8WWZ7 1642 aa10.84□□□□□ -0.67
USP48-203ENST00000374732 KDM4AO75164 1064 aa10.83□□□□□ -0.68
USP48-203ENST00000374732 FAM193AP78312 1265 aa10.83□□□□□ -0.68
USP48-203ENST00000374732 EEA1Q15075 1411 aa10.82□□□□□ -0.68
USP48-203ENST00000374732 CCDC27Q2M243 656 aa10.82□□□□□ -0.68
USP48-203ENST00000374732 CC2D2BQ6DHV5 1058 aa10.82□□□□□ -0.68
USP48-203ENST00000374732 STAC3Q96MF2 364 aa10.82□□□□□ -0.68
USP48-203ENST00000374732 PBRM1Q86U86 1689 aa10.82□□□□□ -0.68
USP48-203ENST00000374732 ANAPC15P60006 121 aa10.82□□□□□ -0.68
USP48-203ENST00000374732 ARID3CA6NKF2 412 aa10.81□□□□□ -0.68
USP48-203ENST00000374732 PCGF6Q9BYE7 350 aa10.81□□□□□ -0.68
USP48-203ENST00000374732 SYNJ2O15056 1496 aa10.81□□□□□ -0.68
USP48-203ENST00000374732 GRIN2BQ13224 1484 aa10.81□□□□□ -0.68
USP48-203ENST00000374732 PLCD3Q8N3E9 789 aa10.8□□□□□ -0.68
USP48-203ENST00000374732 POLA1P09884 1462 aaPredicted RBP10.8□□□□□ -0.68
USP48-203ENST00000374732 CNGB1Q14028 1251 aaPredicted RBP10.8□□□□□ -0.68
USP48-203ENST00000374732 RTL5Q5HYW3 569 aaPredicted RBP10.8□□□□□ -0.68
USP48-203ENST00000374732 ABCA10Q8WWZ4 1543 aa10.8□□□□□ -0.68
USP48-203ENST00000374732 ARAP1Q96P48 1450 aa10.8□□□□□ -0.68
USP48-203ENST00000374732 BIVM-ERCC5R4GMW8 1640 aa10.79□□□□□ -0.68
USP48-203ENST00000374732 PIAS4Q8N2W9 510 aaPredicted RBP10.79□□□□□ -0.68
USP48-203ENST00000374732 PTMAP06454 111 aaKnown RBP10.78□□□□□ -0.68
USP48-203ENST00000374732 GPATCH11Q8N954 259 aa10.76□□□□□ -0.69
USP48-203ENST00000374732 MCCP23508 829 aa10.76□□□□□ -0.69
USP48-203ENST00000374732 FAM50AQ14320 339 aaKnown RBP10.76□□□□□ -0.69
USP48-203ENST00000374732 FAM9BQ8IZU0 186 aa10.76□□□□□ -0.69
USP48-203ENST00000374732 ZNF608Q9ULD9 1512 aaPredicted RBP10.75□□□□□ -0.69
USP48-203ENST00000374732 ERICH3Q5RHP9 1530 aa10.75□□□□□ -0.69
USP48-203ENST00000374732 RGS22Q8NE09 1264 aa10.74□□□□□ -0.69
USP48-203ENST00000374732 WRNQ14191 1432 aaPredicted RBP eCLIP10.74□□□□□ -0.69
USP48-203ENST00000374732 SOX12O15370 315 aa10.73□□□□□ -0.69
USP48-203ENST00000374732 DNAJC2Q99543 621 aaKnown RBP10.72□□□□□ -0.69
USP48-203ENST00000374732 NUP160Q12769 1436 aa10.72□□□□□ -0.69
USP48-203ENST00000374732 SETQ01105 290 aaPredicted RBP10.71□□□□□ -0.69
USP48-203ENST00000374732 ADAMTS12P58397 1594 aa10.71□□□□□ -0.69
USP48-203ENST00000374732 NEFMP07197 916 aa10.69□□□□□ -0.7
USP48-203ENST00000374732 ADRA2BP18089 450 aa10.69□□□□□ -0.7
USP48-203ENST00000374732 TNIKQ9UKE5 1360 aa10.69□□□□□ -0.7
USP48-203ENST00000374732 SOGA1O94964 1423 aa10.68□□□□□ -0.7
USP48-203ENST00000374732 CUX1P39880 1505 aa10.68□□□□□ -0.7
USP48-203ENST00000374732 BRPF1P55201 1214 aaPredicted RBP10.68□□□□□ -0.7
USP48-203ENST00000374732 MAPKBP1O60336 1514 aa10.67□□□□□ -0.7
USP48-203ENST00000374732 NPM3O75607 178 aaKnown RBP10.67□□□□□ -0.7
USP48-203ENST00000374732 TOP2BQ02880 1626 aa10.67□□□□□ -0.7
USP48-203ENST00000374732 SNAPC4Q5SXM2 1469 aa10.67□□□□□ -0.7
USP48-203ENST00000374732 FGD5Q6ZNL6 1462 aa10.66□□□□□ -0.7
USP48-203ENST00000374732 ZNF830Q96NB3 372 aaPredicted RBP10.65□□□□□ -0.7
USP48-203ENST00000374732 KIF21BO75037 1637 aa10.65□□□□□ -0.7
USP48-203ENST00000374732 MAFGO15525 162 aa10.64□□□□□ -0.71
USP48-203ENST00000374732 YTHDC1Q96MU7 727 aaKnown RBP10.64□□□□□ -0.71
USP48-203ENST00000374732 GOLGA3Q08378 1498 aa10.64□□□□□ -0.71
USP48-203ENST00000374732 CDCA8Q53HL2 280 aa10.63□□□□□ -0.71
USP48-203ENST00000374732 PLEKHD1A6NEE1 506 aa10.63□□□□□ -0.71
USP48-203ENST00000374732 CLGNO14967 610 aa10.62□□□□□ -0.71
USP48-203ENST00000374732 RUSC2Q8N2Y8 1516 aa10.62□□□□□ -0.71
USP48-203ENST00000374732 RGS3P49796 1198 aa10.62□□□□□ -0.71
USP48-203ENST00000374732 FOXD4L6Q3SYB3 417 aaPredicted RBP10.62□□□□□ -0.71
USP48-203ENST00000374732 FOXD4L3Q6VB84 417 aaPredicted RBP10.62□□□□□ -0.71
USP48-203ENST00000374732 GAPVD1Q14C86 1478 aa10.62□□□□□ -0.71
USP48-203ENST00000374732 FHAD1B1AJZ9 1412 aa10.61□□□□□ -0.71
USP48-203ENST00000374732 GRIN2AQ12879 1464 aa10.61□□□□□ -0.71
USP48-203ENST00000374732 MSH5O43196 834 aa10.61□□□□□ -0.71
USP48-203ENST00000374732 PRDM4Q9UKN5 801 aa10.61□□□□□ -0.71
USP48-203ENST00000374732 CUL7Q14999 1698 aa10.61□□□□□ -0.71
USP48-203ENST00000374732 GLI2P10070 1586 aa10.6□□□□□ -0.71
USP48-203ENST00000374732 CEP162Q5TB80 1403 aa10.6□□□□□ -0.71
USP48-203ENST00000374732 TMTC2Q8N394 836 aa10.6□□□□□ -0.71
USP48-203ENST00000374732 LAS1LQ9Y4W2 734 aaKnown RBP10.6□□□□□ -0.71
USP48-203ENST00000374732 HSP90AA2PQ14568 343 aaPredicted RBP10.6□□□□□ -0.71
USP48-203ENST00000374732 AEBP1Q8IUX7 1158 aa10.6□□□□□ -0.71
USP48-203ENST00000374732 HDAC5Q9UQL6 1122 aa10.59□□□□□ -0.71
USP48-203ENST00000374732 SGSM3Q96HU1 749 aa10.58□□□□□ -0.72
USP48-203ENST00000374732 CEP170Q5SW79 1584 aa10.58□□□□□ -0.72
USP48-203ENST00000374732 MYCNP04198 464 aaPredicted RBP10.58□□□□□ -0.72
USP48-203ENST00000374732 RRP9O43818 475 aaKnown RBP10.57□□□□□ -0.72
USP48-203ENST00000374732 PHF14O94880 888 aa10.57□□□□□ -0.72
USP48-203ENST00000374732 ZNF622Q969S3 477 aaKnown RBP eCLIP10.57□□□□□ -0.723e-9■■■□□ 16.3
USP48-203ENST00000374732 SLC52A1Q9NWF4 448 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms