RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 TMX4Q9H1E5 349 aaPredicted RBP10.95□□□□□ -0.66
NIPBL-201ENST00000282516 ZCCHC6Q5VYS8 1495 aaKnown RBP10.95□□□□□ -0.66
NIPBL-201ENST00000282516 CALD1Q05682 793 aaKnown RBP10.94□□□□□ -0.66
NIPBL-201ENST00000282516 GOLGA6L3A6NEY3 463 aa10.94□□□□□ -0.66
NIPBL-201ENST00000282516 GPS2Q13227 327 aa10.94□□□□□ -0.66
NIPBL-201ENST00000282516 RGL3Q3MIN7 710 aa10.93□□□□□ -0.66
NIPBL-201ENST00000282516 HSP90B1P14625 803 aaKnown RBP10.93□□□□□ -0.66
NIPBL-201ENST00000282516 KANK1Q14678 1352 aa10.93□□□□□ -0.66
NIPBL-201ENST00000282516 CHMP7Q8WUX9 453 aaPredicted RBP10.93□□□□□ -0.66
NIPBL-201ENST00000282516 CHMP4AQ9BY43 222 aa10.93□□□□□ -0.66
NIPBL-201ENST00000282516 RTF1Q92541 710 aaKnown RBP10.92□□□□□ -0.66
NIPBL-201ENST00000282516 TSR1Q2NL82 804 aaKnown RBP10.92□□□□□ -0.66
NIPBL-201ENST00000282516 KIF3AQ9Y496 699 aa10.91□□□□□ -0.66
NIPBL-201ENST00000282516 RRP12Q5JTH9 1297 aaKnown RBP10.91□□□□□ -0.66
NIPBL-201ENST00000282516 GZF1Q9H116 711 aaPredicted RBP10.9□□□□□ -0.66
NIPBL-201ENST00000282516 TPM1P09493 284 aa10.9□□□□□ -0.66
NIPBL-201ENST00000282516 GOLGA3Q08378 1498 aa10.9□□□□□ -0.66
NIPBL-201ENST00000282516 PLEKHD1A6NEE1 506 aa10.9□□□□□ -0.66
NIPBL-201ENST00000282516 CC2D1BQ5T0F9 858 aaKnown RBP10.9□□□□□ -0.66
NIPBL-201ENST00000282516 HDAC5Q9UQL6 1122 aa10.89□□□□□ -0.67
NIPBL-201ENST00000282516 HSP90AA2PQ14568 343 aaPredicted RBP10.89□□□□□ -0.67
NIPBL-201ENST00000282516 TPM2P07951 284 aa10.89□□□□□ -0.67
NIPBL-201ENST00000282516 B4GALNT3Q6L9W6 998 aa10.89□□□□□ -0.67
NIPBL-201ENST00000282516 RWDD1Q9H446 243 aaPredicted RBP10.89□□□□□ -0.67
NIPBL-201ENST00000282516 RSPH6AQ9H0K4 717 aa10.88□□□□□ -0.67
NIPBL-201ENST00000282516 SENP3-EIF4A1A0A087X0R7 540 aa10.88□□□□□ -0.67
NIPBL-201ENST00000282516 GORABQ5T7V8 394 aa10.88□□□□□ -0.67
NIPBL-201ENST00000282516 KTN1Q86UP2 1357 aaKnown RBP10.88□□□□□ -0.67
NIPBL-201ENST00000282516 TCERG1O14776 1098 aaKnown RBP10.87□□□□□ -0.67
NIPBL-201ENST00000282516 KIF16BQ96L93 1317 aa10.87□□□□□ -0.67
NIPBL-201ENST00000282516 TMF1P82094 1093 aa10.87□□□□□ -0.67
NIPBL-201ENST00000282516 KRI1Q8N9T8 703 aaKnown RBP10.87□□□□□ -0.67
NIPBL-201ENST00000282516 EEA1Q15075 1411 aa10.87□□□□□ -0.67
NIPBL-201ENST00000282516 PATL2C9JE40 543 aaKnown RBP10.87□□□□□ -0.67
NIPBL-201ENST00000282516 CREBRFQ8IUR6 639 aa10.87□□□□□ -0.67
NIPBL-201ENST00000282516 VPS53Q5VIR6 699 aa10.87□□□□□ -0.67
NIPBL-201ENST00000282516 SLKQ9H2G2 1235 aaPredicted RBP10.87□□□□□ -0.67
NIPBL-201ENST00000282516 DDX11L8A8MPP1 907 aa10.87□□□□□ -0.67
NIPBL-201ENST00000282516 HMMRO75330 724 aa10.87□□□□□ -0.67
NIPBL-201ENST00000282516 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.86□□□□□ -0.67
NIPBL-201ENST00000282516 TEX35Q5T0J7 233 aa10.86□□□□□ -0.67
NIPBL-201ENST00000282516 ITPRIPQ8IWB1 547 aa10.86□□□□□ -0.67
NIPBL-201ENST00000282516 MORC1Q86VD1 984 aa10.86□□□□□ -0.67
NIPBL-201ENST00000282516 KCNH8Q96L42 1107 aa10.86□□□□□ -0.67
NIPBL-201ENST00000282516 CFDP1Q9UEE9 299 aaPredicted RBP10.86□□□□□ -0.67
NIPBL-201ENST00000282516 APBB1O00213 710 aa10.85□□□□□ -0.67
NIPBL-201ENST00000282516 TPD52L1Q16890 204 aaPredicted RBP10.85□□□□□ -0.67
NIPBL-201ENST00000282516 HDGFP51858 240 aaKnown RBP10.85□□□□□ -0.67
NIPBL-201ENST00000282516 CHMP4CQ96CF2 233 aa10.85□□□□□ -0.67
NIPBL-201ENST00000282516 ST18O60284 1047 aa10.84□□□□□ -0.67
NIPBL-201ENST00000282516 CCAR2Q8N163 923 aaKnown RBP10.84□□□□□ -0.67
NIPBL-201ENST00000282516 EIF3AQ14152 1382 aaKnown RBP10.84□□□□□ -0.67
NIPBL-201ENST00000282516 SPAG9O60271 1321 aaKnown RBP10.84□□□□□ -0.67
NIPBL-201ENST00000282516 PES1O00541 588 aaKnown RBP10.84□□□□□ -0.67
NIPBL-201ENST00000282516 MARCH6O60337 910 aa10.83□□□□□ -0.68
NIPBL-201ENST00000282516 NOM1Q5C9Z4 860 aaKnown RBP10.83□□□□□ -0.68
NIPBL-201ENST00000282516 TCEAL9Q9UHQ7 104 aa10.83□□□□□ -0.68
NIPBL-201ENST00000282516 IPO7O95373 1038 aaKnown RBP10.83□□□□□ -0.68
NIPBL-201ENST00000282516 ATP6V1DQ9Y5K8 247 aa10.83□□□□□ -0.68
NIPBL-201ENST00000282516 ZNF771Q7L3S4 317 aaPredicted RBP10.82□□□□□ -0.68
NIPBL-201ENST00000282516 STK31Q9BXU1 1019 aa10.82□□□□□ -0.68
NIPBL-201ENST00000282516 CEP162Q5TB80 1403 aa10.82□□□□□ -0.68
NIPBL-201ENST00000282516 TRIM6-TRIM34B2RNG4 842 aa10.82□□□□□ -0.68
NIPBL-201ENST00000282516 CDR1P51861 262 aa10.82□□□□□ -0.68
NIPBL-201ENST00000282516 SRPK2P78362 688 aaKnown RBP10.82□□□□□ -0.68
NIPBL-201ENST00000282516 TAF7LQ5H9L4 462 aa10.81□□□□□ -0.68
NIPBL-201ENST00000282516 PMFBP1Q8TBY8 1022 aa10.81□□□□□ -0.68
NIPBL-201ENST00000282516 SF3A1Q15459 793 aaKnown RBP10.81□□□□□ -0.68
NIPBL-201ENST00000282516 GOLGA6L19H0YKK7 550 aa10.81□□□□□ -0.68
NIPBL-201ENST00000282516 ANKRD20A12PQ8NF67 263 aa10.8□□□□□ -0.68
NIPBL-201ENST00000282516 CHMP3Q9Y3E7 222 aa10.8□□□□□ -0.68
NIPBL-201ENST00000282516 AK7Q96M32 723 aa10.8□□□□□ -0.68
NIPBL-201ENST00000282516 HDGFL2Q7Z4V5 671 aaPredicted RBP10.79□□□□□ -0.68
NIPBL-201ENST00000282516 MFAP1P55081 439 aaKnown RBP10.79□□□□□ -0.68
NIPBL-201ENST00000282516 H3BQV1 296 aa10.79□□□□□ -0.68
NIPBL-201ENST00000282516 IFFO2Q5TF58 517 aa10.79□□□□□ -0.68
NIPBL-201ENST00000282516 G3V3G9 751 aa10.79□□□□□ -0.68
NIPBL-201ENST00000282516 DCAF8Q5TAQ9 597 aa10.79□□□□□ -0.68
NIPBL-201ENST00000282516 FBXO3Q9UK99 471 aa10.78□□□□□ -0.68
NIPBL-201ENST00000282516 ZNF330Q9Y3S2 320 aaPredicted RBP10.78□□□□□ -0.68
NIPBL-201ENST00000282516 ACBD3Q9H3P7 528 aa10.78□□□□□ -0.68
NIPBL-201ENST00000282516 CCNB3Q8WWL7 1395 aa10.78□□□□□ -0.68
NIPBL-201ENST00000282516 RUFY1Q96T51 708 aa10.78□□□□□ -0.68
NIPBL-201ENST00000282516 CCER2I3L3R5 266 aa10.77□□□□□ -0.69
NIPBL-201ENST00000282516 RBM19Q9Y4C8 960 aaKnown RBP10.77□□□□□ -0.69
NIPBL-201ENST00000282516 BECN2A8MW95 431 aa10.77□□□□□ -0.69
NIPBL-201ENST00000282516 AKAP17AQ02040 695 aaKnown RBP10.77□□□□□ -0.69
NIPBL-201ENST00000282516 CNKSR2Q8WXI2 1034 aa10.77□□□□□ -0.69
NIPBL-201ENST00000282516 CCDC191Q8NCU4 936 aa10.77□□□□□ -0.69
NIPBL-201ENST00000282516 SKOR2Q2VWA4 1001 aaPredicted RBP10.77□□□□□ -0.69
NIPBL-201ENST00000282516 DCTN1Q14203 1278 aa10.77□□□□□ -0.69
NIPBL-201ENST00000282516 HOOK1Q9UJC3 728 aaKnown RBP10.77□□□□□ -0.69
NIPBL-201ENST00000282516 SOX12O15370 315 aa10.76□□□□□ -0.69
NIPBL-201ENST00000282516 RCAN3Q9UKA8 241 aa10.76□□□□□ -0.69
NIPBL-201ENST00000282516 TOMM22Q9NS69 142 aa10.76□□□□□ -0.69
NIPBL-201ENST00000282516 RDXP35241 583 aaKnown RBP10.76□□□□□ -0.69
NIPBL-201ENST00000282516 CEP164Q9UPV0 1460 aa10.75□□□□□ -0.69
NIPBL-201ENST00000282516 CSB-PGBD3P0DP91 1061 aa10.75□□□□□ -0.69
NIPBL-201ENST00000282516 FHAD1B1AJZ9 1412 aa10.75□□□□□ -0.69
NIPBL-201ENST00000282516 IPO9Q96P70 1041 aaKnown RBP10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 899.9 ms