RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 SOWAHBA6NEL2 793 aa23.45■■□□□ 1.34
PTCD3-220ENST00000627371 CCDC85CA6NKD9 419 aa23.45■■□□□ 1.34
PTCD3-220ENST00000627371 MYCP01106 439 aaPredicted RBP23.45■■□□□ 1.34
PTCD3-220ENST00000627371 CCL5P13501 91 aa23.45■■□□□ 1.34
PTCD3-220ENST00000627371 IFNAR1P17181 557 aa23.45■■□□□ 1.34
PTCD3-220ENST00000627371 CALML3P27482 149 aa23.45■■□□□ 1.34
PTCD3-220ENST00000627371 STK3Q13188 491 aa23.45■■□□□ 1.34
PTCD3-220ENST00000627371 RABEP1Q15276 862 aa23.45■■□□□ 1.34
PTCD3-220ENST00000627371 V9GY48 417 aaPredicted RBP23.45■■□□□ 1.34
PTCD3-220ENST00000627371 ASTN1O14525 1302 aa23.44■■□□□ 1.34
PTCD3-220ENST00000627371 PFKFB2O60825 505 aa23.44■■□□□ 1.34
PTCD3-220ENST00000627371 SAMD3Q8N6K7 520 aa23.44■■□□□ 1.34
PTCD3-220ENST00000627371 TBC1D5Q92609 795 aa23.44■■□□□ 1.34
PTCD3-220ENST00000627371 UNC93B1Q9H1C4 597 aa23.44■■□□□ 1.34
PTCD3-220ENST00000627371 SLKQ9H2G2 1235 aaPredicted RBP23.44■■□□□ 1.34
PTCD3-220ENST00000627371 MAP3K20Q9NYL2 800 aaKnown RBP23.44■■□□□ 1.34
PTCD3-220ENST00000627371 RBM27Q9P2N5 1060 aaKnown RBP23.44■■□□□ 1.34
PTCD3-220ENST00000627371 ADD3Q9UEY8 706 aaKnown RBP23.44■■□□□ 1.34
PTCD3-220ENST00000627371 CFBP00751 764 aa23.43■■□□□ 1.34
PTCD3-220ENST00000627371 HSD17B4P51659 736 aa23.43■■□□□ 1.34
PTCD3-220ENST00000627371 SCRN1Q12765 414 aa23.43■■□□□ 1.34
PTCD3-220ENST00000627371 NOL8Q76FK4 1167 aaKnown RBP23.43■■□□□ 1.34
PTCD3-220ENST00000627371 PURBQ96QR8 312 aaKnown RBP23.43■■□□□ 1.34
PTCD3-220ENST00000627371 RNF26Q9BY78 433 aaPredicted RBP23.43■■□□□ 1.34
PTCD3-220ENST00000627371 RNF208Q9H0X6 261 aa23.43■■□□□ 1.34
PTCD3-220ENST00000627371 HMX1Q9NP08 348 aaPredicted RBP23.43■■□□□ 1.34
PTCD3-220ENST00000627371 LOC102724159A0A0B4J2E5 919 aa23.42■■□□□ 1.34
PTCD3-220ENST00000627371 hCG_1984214I3L0E3 225 aa23.42■■□□□ 1.34
PTCD3-220ENST00000627371 CPLX1O14810 134 aa23.42■■□□□ 1.34
PTCD3-220ENST00000627371 PRPF3O43395 683 aaKnown RBP23.42■■□□□ 1.34
PTCD3-220ENST00000627371 CYBAP13498 195 aa23.42■■□□□ 1.34
PTCD3-220ENST00000627371 PWP2Q15269 919 aaKnown RBP23.42■■□□□ 1.34
PTCD3-220ENST00000627371 ME3Q16798 604 aa23.42■■□□□ 1.34
PTCD3-220ENST00000627371 WWC2Q6AWC2 1192 aa23.42■■□□□ 1.34
PTCD3-220ENST00000627371 CPLX2Q6PUV4 134 aaKnown RBP23.42■■□□□ 1.34
PTCD3-220ENST00000627371 HEATR3Q7Z4Q2 680 aa23.42■■□□□ 1.34
PTCD3-220ENST00000627371 ZNF713Q8N859 430 aaPredicted RBP23.42■■□□□ 1.34
PTCD3-220ENST00000627371 IL27Q8NEV9 243 aa23.42■■□□□ 1.34
PTCD3-220ENST00000627371 DNERQ8NFT8 737 aa23.42■■□□□ 1.34
PTCD3-220ENST00000627371 SYTL5Q8TDW5 730 aaPredicted RBP23.42■■□□□ 1.34
PTCD3-220ENST00000627371 GPKOWQ92917 476 aaPredicted RBP eCLIP23.42■■□□□ 1.34
PTCD3-220ENST00000627371 PHKBQ93100 1093 aa23.42■■□□□ 1.34
PTCD3-220ENST00000627371 TMEM106CQ9BVX2 250 aa23.42■■□□□ 1.34
PTCD3-220ENST00000627371 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.42■■□□□ 1.34
PTCD3-220ENST00000627371 PAK6Q9NQU5 681 aaPredicted RBP23.42■■□□□ 1.34
PTCD3-220ENST00000627371 NRBP1Q9UHY1 535 aa23.42■■□□□ 1.34
PTCD3-220ENST00000627371 ASB14A6NK59 587 aa23.41■■□□□ 1.34
PTCD3-220ENST00000627371 ALDH5A1P51649 535 aaPredicted RBP23.41■■□□□ 1.34
PTCD3-220ENST00000627371 PFKFB3Q16875 520 aaPredicted RBP23.41■■□□□ 1.34
PTCD3-220ENST00000627371 ARMCX2Q7L311 632 aa23.41■■□□□ 1.34
PTCD3-220ENST00000627371 TRPV1Q8NER1 839 aa23.41■■□□□ 1.34
PTCD3-220ENST00000627371 COL20A1Q9P218 1284 aa23.41■■□□□ 1.34
PTCD3-220ENST00000627371 LARGE1O95461 756 aa23.4■■□□□ 1.34
PTCD3-220ENST00000627371 SNAI1O95863 264 aaPredicted RBP23.4■■□□□ 1.34
PTCD3-220ENST00000627371 CCND3P30281 292 aaPredicted RBP23.4■■□□□ 1.34
PTCD3-220ENST00000627371 AKAP17AQ02040 695 aaKnown RBP23.4■■□□□ 1.34
PTCD3-220ENST00000627371 PPP1R18Q6NYC8 613 aa23.4■■□□□ 1.34
PTCD3-220ENST00000627371 MORC4Q8TE76 937 aa23.4■■□□□ 1.34
PTCD3-220ENST00000627371 SLC26A6Q9BXS9 759 aa23.4■■□□□ 1.34
PTCD3-220ENST00000627371 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.4■■□□□ 1.34
PTCD3-220ENST00000627371 CNPY2Q9Y2B0 182 aa23.4■■□□□ 1.34
PTCD3-220ENST00000627371 KIAA1217Q5T5P2 1943 aa23.39■■□□□ 1.34
PTCD3-220ENST00000627371 GCOM1H8Y6P7 765 aaPredicted RBP23.39■■□□□ 1.33
PTCD3-220ENST00000627371 GJB1P08034 283 aa23.39■■□□□ 1.33
PTCD3-220ENST00000627371 POLR2MP0CAP2 368 aa23.39■■□□□ 1.33
PTCD3-220ENST00000627371 SCG2P13521 617 aa23.39■■□□□ 1.33
PTCD3-220ENST00000627371 PKN1Q16512 942 aa23.39■■□□□ 1.33
PTCD3-220ENST00000627371 PRAMEF19Q5SWL8 479 aa23.39■■□□□ 1.33
PTCD3-220ENST00000627371 TRIM22Q8IYM9 498 aa23.39■■□□□ 1.33
PTCD3-220ENST00000627371 GTF3C6Q969F1 213 aa23.39■■□□□ 1.33
PTCD3-220ENST00000627371 BARHL2Q9NY43 387 aa23.39■■□□□ 1.33
PTCD3-220ENST00000627371 LIMCH1Q9UPQ0 1083 aa23.39■■□□□ 1.33
PTCD3-220ENST00000627371 STXBP3O00186 592 aa23.38■■□□□ 1.33
PTCD3-220ENST00000627371 ST18O60284 1047 aa23.38■■□□□ 1.33
PTCD3-220ENST00000627371 CDKL5O76039 1030 aa23.38■■□□□ 1.33
PTCD3-220ENST00000627371 HOXA13P31271 388 aaPredicted RBP23.38■■□□□ 1.33
PTCD3-220ENST00000627371 NAPAP54920 295 aa23.38■■□□□ 1.33
PTCD3-220ENST00000627371 SSRP1Q08945 709 aaKnown RBP23.38■■□□□ 1.33
PTCD3-220ENST00000627371 TYW1BQ6NUM6 668 aa23.38■■□□□ 1.33
PTCD3-220ENST00000627371 TAAR1Q96RJ0 339 aa23.38■■□□□ 1.33
PTCD3-220ENST00000627371 POTEFA5A3E0 1075 aa23.37■■□□□ 1.33
PTCD3-220ENST00000627371 PIK3CDO00329 1044 aa23.37■■□□□ 1.33
PTCD3-220ENST00000627371 PPFIA3O75145 1194 aa23.37■■□□□ 1.33
PTCD3-220ENST00000627371 ZNF865P0CJ78 1059 aaPredicted RBP23.37■■□□□ 1.33
PTCD3-220ENST00000627371 EDNRBP24530 442 aa23.37■■□□□ 1.33
PTCD3-220ENST00000627371 SOX10P56693 466 aa23.37■■□□□ 1.33
PTCD3-220ENST00000627371 NECAB1Q8N987 351 aa23.37■■□□□ 1.33
PTCD3-220ENST00000627371 NSUN6Q8TEA1 469 aaKnown RBP23.37■■□□□ 1.33
PTCD3-220ENST00000627371 DEFB118Q96PH6 123 aa23.37■■□□□ 1.33
PTCD3-220ENST00000627371 RMDN3Q96TC7 470 aa23.37■■□□□ 1.33
PTCD3-220ENST00000627371 MPHOSPH6Q99547 160 aaKnown RBP23.37■■□□□ 1.33
PTCD3-220ENST00000627371 KATNBL1Q9H079 304 aa23.37■■□□□ 1.33
PTCD3-220ENST00000627371 ABHD16BQ9H3Z7 469 aa23.37■■□□□ 1.33
PTCD3-220ENST00000627371 PSTPIP2Q9H939 334 aa23.37■■□□□ 1.33
PTCD3-220ENST00000627371 B4DLN1 442 aa23.36■■□□□ 1.33
PTCD3-220ENST00000627371 SEPT4O43236 478 aa23.36■■□□□ 1.33
PTCD3-220ENST00000627371 CNGA1P29973 690 aa23.36■■□□□ 1.33
PTCD3-220ENST00000627371 GJA8P48165 433 aa23.36■■□□□ 1.33
PTCD3-220ENST00000627371 MRPL12P52815 198 aaKnown RBP23.36■■□□□ 1.33
PTCD3-220ENST00000627371 U2AF1L4Q8WU68 220 aaKnown RBP23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms