RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 ST13P5Q8NFI4 369 aaPredicted RBP5.49□□□□□ -1.53
CKS1BP3-201ENST00000600888 PMFBP1Q8TBY8 1022 aa5.49□□□□□ -1.53
CKS1BP3-201ENST00000600888 PTCHD1Q96NR3 888 aa5.49□□□□□ -1.53
CKS1BP3-201ENST00000600888 CYP26B1Q9NR63 512 aa5.49□□□□□ -1.53
CKS1BP3-201ENST00000600888 BACE2Q9Y5Z0 518 aa5.49□□□□□ -1.53
CKS1BP3-201ENST00000600888 NUP153P49790 1475 aaKnown RBP5.48□□□□□ -1.53
CKS1BP3-201ENST00000600888 A0A1W2PQ45 241 aaPredicted RBP5.48□□□□□ -1.53
CKS1BP3-201ENST00000600888 A0A1W2PQY0 241 aa5.48□□□□□ -1.53
CKS1BP3-201ENST00000600888 WTIPA6NIX2 430 aaPredicted RBP5.48□□□□□ -1.53
CKS1BP3-201ENST00000600888 CCDC85CA6NKD9 419 aa5.48□□□□□ -1.53
CKS1BP3-201ENST00000600888 PDPK1O15530 556 aa5.48□□□□□ -1.53
CKS1BP3-201ENST00000600888 TBX1O43435 398 aa5.48□□□□□ -1.53
CKS1BP3-201ENST00000600888 NRDCO43847 1150 aa5.48□□□□□ -1.53
CKS1BP3-201ENST00000600888 TBC1D8O95759 1140 aa5.48□□□□□ -1.53
CKS1BP3-201ENST00000600888 CAPNS1P04632 268 aa5.48□□□□□ -1.53
CKS1BP3-201ENST00000600888 GLI1P08151 1106 aa5.48□□□□□ -1.53
CKS1BP3-201ENST00000600888 SEPHS1P49903 392 aa5.48□□□□□ -1.53
CKS1BP3-201ENST00000600888 HLA-DQA1Q5Y7H0 255 aa5.48□□□□□ -1.53
CKS1BP3-201ENST00000600888 SLCO6A1Q86UG4 719 aa5.48□□□□□ -1.53
CKS1BP3-201ENST00000600888 BTN2A2Q8WVV5 523 aa5.48□□□□□ -1.53
CKS1BP3-201ENST00000600888 COPS5Q92905 334 aa5.48□□□□□ -1.53
CKS1BP3-201ENST00000600888 NKX2-4Q9H2Z4 354 aa5.48□□□□□ -1.53
CKS1BP3-201ENST00000600888 GPR160Q9UJ42 338 aa5.48□□□□□ -1.53
CKS1BP3-201ENST00000600888 A0A1W2PQU0 124 aa5.47□□□□□ -1.53
CKS1BP3-201ENST00000600888 ZNF503-AS2A6NEH8 195 aa5.47□□□□□ -1.53
CKS1BP3-201ENST00000600888 EFEMP2O95967 443 aa5.47□□□□□ -1.53
CKS1BP3-201ENST00000600888 HOXC12P31275 282 aa5.47□□□□□ -1.53
CKS1BP3-201ENST00000600888 SCRN1Q12765 414 aa5.47□□□□□ -1.53
CKS1BP3-201ENST00000600888 RASGRF1Q13972 1273 aa5.47□□□□□ -1.53
CKS1BP3-201ENST00000600888 HSF5Q4G112 596 aaPredicted RBP5.47□□□□□ -1.53
CKS1BP3-201ENST00000600888 GALNT18Q6P9A2 607 aa5.47□□□□□ -1.53
CKS1BP3-201ENST00000600888 CYP2R1Q6VVX0 501 aa5.47□□□□□ -1.53
CKS1BP3-201ENST00000600888 UBXN4Q92575 508 aa5.47□□□□□ -1.53
CKS1BP3-201ENST00000600888 MKL1Q969V6 931 aa5.47□□□□□ -1.53
CKS1BP3-201ENST00000600888 ZNF669Q96BR6 464 aaPredicted RBP5.47□□□□□ -1.53
CKS1BP3-201ENST00000600888 SHISA4Q96DD7 197 aa5.47□□□□□ -1.53
CKS1BP3-201ENST00000600888 SGSM3Q96HU1 749 aa5.47□□□□□ -1.53
CKS1BP3-201ENST00000600888 RNF32Q9H0A6 362 aa5.47□□□□□ -1.53
CKS1BP3-201ENST00000600888 GPRC5CQ9NQ84 441 aa5.47□□□□□ -1.53
CKS1BP3-201ENST00000600888 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.47□□□□□ -1.53
CKS1BP3-201ENST00000600888 FHOD3Q2V2M9 1422 aa5.47□□□□□ -1.53
CKS1BP3-201ENST00000600888 CD109Q6YHK3 1445 aa5.47□□□□□ -1.53
CKS1BP3-201ENST00000600888 PHLDB1Q86UU1 1377 aa5.46□□□□□ -1.54
CKS1BP3-201ENST00000600888 IQCA1LA6NCM1 817 aa5.46□□□□□ -1.54
CKS1BP3-201ENST00000600888 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.46□□□□□ -1.54
CKS1BP3-201ENST00000600888 PPP2R2AP63151 447 aa5.46□□□□□ -1.54
CKS1BP3-201ENST00000600888 CYP4F3Q08477 520 aa5.46□□□□□ -1.54
CKS1BP3-201ENST00000600888 SPATC1Q76KD6 591 aa5.46□□□□□ -1.54
CKS1BP3-201ENST00000600888 LRP10Q7Z4F1 713 aa5.46□□□□□ -1.54
CKS1BP3-201ENST00000600888 NLRX1Q86UT6 975 aa5.46□□□□□ -1.54
CKS1BP3-201ENST00000600888 JAMLQ86YT9 394 aa5.46□□□□□ -1.54
CKS1BP3-201ENST00000600888 KSR1Q8IVT5 923 aa5.46□□□□□ -1.54
CKS1BP3-201ENST00000600888 LIN37Q96GY3 246 aaPredicted RBP5.46□□□□□ -1.54
CKS1BP3-201ENST00000600888 CCDC140Q96MF4 163 aa5.46□□□□□ -1.54
CKS1BP3-201ENST00000600888 JMJD8Q96S16 334 aa5.46□□□□□ -1.54
CKS1BP3-201ENST00000600888 PLCD4Q9BRC7 762 aa5.46□□□□□ -1.54
CKS1BP3-201ENST00000600888 CWC22Q9HCG8 908 aaKnown RBP5.46□□□□□ -1.54
CKS1BP3-201ENST00000600888 LRRIQ1Q96JM4 1722 aa5.45□□□□□ -1.54
CKS1BP3-201ENST00000600888 ARHGAP35Q9NRY4 1499 aa5.45□□□□□ -1.54
CKS1BP3-201ENST00000600888 ARAP3Q8WWN8 1544 aa5.45□□□□□ -1.54
CKS1BP3-201ENST00000600888 FAM221BA6H8Z2 402 aa5.45□□□□□ -1.54
CKS1BP3-201ENST00000600888 THBDP07204 575 aa5.45□□□□□ -1.54
CKS1BP3-201ENST00000600888 PAMP19021 973 aa5.45□□□□□ -1.54
CKS1BP3-201ENST00000600888 GRIA2P42262 883 aa5.45□□□□□ -1.54
CKS1BP3-201ENST00000600888 GALK1P51570 392 aa5.45□□□□□ -1.54
CKS1BP3-201ENST00000600888 HSP90AA2PQ14568 343 aaPredicted RBP5.45□□□□□ -1.54
CKS1BP3-201ENST00000600888 RASA3Q14644 834 aa5.45□□□□□ -1.54
CKS1BP3-201ENST00000600888 KIR3DS1Q14943 382 aa5.45□□□□□ -1.54
CKS1BP3-201ENST00000600888 SF1Q15637 639 aaKnown RBP5.45□□□□□ -1.54
CKS1BP3-201ENST00000600888 SIRT2Q8IXJ6 389 aa5.45□□□□□ -1.54
CKS1BP3-201ENST00000600888 DEPDC7Q96QD5 511 aa5.45□□□□□ -1.54
CKS1BP3-201ENST00000600888 CRTAC1Q9NQ79 661 aa5.45□□□□□ -1.54
CKS1BP3-201ENST00000600888 SNTG2Q9NY99 539 aa5.45□□□□□ -1.54
CKS1BP3-201ENST00000600888 FAM53CQ9NYF3 392 aa5.45□□□□□ -1.54
CKS1BP3-201ENST00000600888 ACSL6Q9UKU0 697 aa5.45□□□□□ -1.54
CKS1BP3-201ENST00000600888 YBX2Q9Y2T7 364 aaKnown RBP5.45□□□□□ -1.54
CKS1BP3-201ENST00000600888 TAF6LQ9Y6J9 622 aa5.45□□□□□ -1.54
CKS1BP3-201ENST00000600888 FMN1Q68DA7 1419 aa5.45□□□□□ -1.54
CKS1BP3-201ENST00000600888 HECW1Q76N89 1606 aa5.45□□□□□ -1.54
CKS1BP3-201ENST00000600888 TRBV23OR9-2A0A075B6M9 112 aa5.44□□□□□ -1.54
CKS1BP3-201ENST00000600888 NPHP3-ACAD11A0A0J9YXS1 232 aa5.44□□□□□ -1.54
CKS1BP3-201ENST00000600888 PAX4O43316 350 aa5.44□□□□□ -1.54
CKS1BP3-201ENST00000600888 CPP00450 1065 aa5.44□□□□□ -1.54
CKS1BP3-201ENST00000600888 SCG5P05408 212 aa5.44□□□□□ -1.54
CKS1BP3-201ENST00000600888 SNRPB2P08579 225 aaKnown RBP5.44□□□□□ -1.54
CKS1BP3-201ENST00000600888 PLS3P13797 630 aa5.44□□□□□ -1.54
CKS1BP3-201ENST00000600888 PNLIPP16233 465 aa5.44□□□□□ -1.54
CKS1BP3-201ENST00000600888 PRKCAP17252 672 aa5.44□□□□□ -1.54
CKS1BP3-201ENST00000600888 L1CAMP32004 1257 aa5.44□□□□□ -1.54
CKS1BP3-201ENST00000600888 ECI1P42126 302 aa5.44□□□□□ -1.54
CKS1BP3-201ENST00000600888 KCNJ6P48051 423 aa5.44□□□□□ -1.54
CKS1BP3-201ENST00000600888 GFRA1P56159 465 aa5.44□□□□□ -1.54
CKS1BP3-201ENST00000600888 MTERF2Q49AM1 385 aa5.44□□□□□ -1.54
CKS1BP3-201ENST00000600888 MPZL3Q6UWV2 235 aa5.44□□□□□ -1.54
CKS1BP3-201ENST00000600888 CPNE8Q86YQ8 564 aa5.44□□□□□ -1.54
CKS1BP3-201ENST00000600888 LRRC47Q8N1G4 583 aaKnown RBP5.44□□□□□ -1.54
CKS1BP3-201ENST00000600888 NLGN2Q8NFZ4 835 aa5.44□□□□□ -1.54
CKS1BP3-201ENST00000600888 NPLOC4Q8TAT6 608 aa5.44□□□□□ -1.54
CKS1BP3-201ENST00000600888 FRS2Q8WU20 508 aa5.44□□□□□ -1.54
CKS1BP3-201ENST00000600888 SRPK1Q96SB4 655 aaKnown RBP5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms