RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 MAP3K21Q5TCX8 1036 aa22.72■■□□□ 1.23
SHKBP1-214ENST00000597396 NOL8Q76FK4 1167 aaKnown RBP22.72■■□□□ 1.23
SHKBP1-214ENST00000597396 MSL3Q8N5Y2 521 aaKnown RBP22.72■■□□□ 1.23
SHKBP1-214ENST00000597396 RGS22Q8NE09 1264 aa22.72■■□□□ 1.23
SHKBP1-214ENST00000597396 BACH2Q9BYV9 841 aa22.72■■□□□ 1.23
SHKBP1-214ENST00000597396 MAF1Q9H063 256 aa22.72■■□□□ 1.23
SHKBP1-214ENST00000597396 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.72■■□□□ 1.23
SHKBP1-214ENST00000597396 ADD3Q9UEY8 706 aaKnown RBP22.72■■□□□ 1.23
SHKBP1-214ENST00000597396 CFBP00751 764 aa22.71■■□□□ 1.23
SHKBP1-214ENST00000597396 FUT2Q10981 343 aa22.71■■□□□ 1.23
SHKBP1-214ENST00000597396 TBC1D5Q92609 795 aa22.71■■□□□ 1.23
SHKBP1-214ENST00000597396 FGD4Q96M96 766 aa22.71■■□□□ 1.23
SHKBP1-214ENST00000597396 NCOA5Q9HCD5 579 aaKnown RBP22.71■■□□□ 1.23
SHKBP1-214ENST00000597396 CENPFP49454 3210 aa22.71■■□□□ 1.23
SHKBP1-214ENST00000597396 SOWAHBA6NEL2 793 aa22.7■■□□□ 1.22
SHKBP1-214ENST00000597396 IGHA2P01877 340 aa22.7■■□□□ 1.22
SHKBP1-214ENST00000597396 CNGA1P29973 690 aa22.7■■□□□ 1.22
SHKBP1-214ENST00000597396 CCND3P30281 292 aaPredicted RBP22.7■■□□□ 1.22
SHKBP1-214ENST00000597396 MAMDC4Q6UXC1 1216 aa22.7■■□□□ 1.22
SHKBP1-214ENST00000597396 PURBQ96QR8 312 aaKnown RBP22.7■■□□□ 1.22
SHKBP1-214ENST00000597396 V9GY48 417 aaPredicted RBP22.7■■□□□ 1.22
SHKBP1-214ENST00000597396 SYNGAP1Q96PV0 1343 aa22.7■■□□□ 1.22
SHKBP1-214ENST00000597396 LRRC37A2A6NM11 1700 aa22.69■■□□□ 1.22
SHKBP1-214ENST00000597396 ASB14A6NK59 587 aa22.69■■□□□ 1.22
SHKBP1-214ENST00000597396 CPLX1O14810 134 aa22.69■■□□□ 1.22
SHKBP1-214ENST00000597396 AKAP17AQ02040 695 aaKnown RBP22.69■■□□□ 1.22
SHKBP1-214ENST00000597396 CPLX2Q6PUV4 134 aaKnown RBP22.69■■□□□ 1.22
SHKBP1-214ENST00000597396 ARMCX2Q7L311 632 aa22.69■■□□□ 1.22
SHKBP1-214ENST00000597396 HEATR3Q7Z4Q2 680 aa22.69■■□□□ 1.22
SHKBP1-214ENST00000597396 KIF2CQ99661 725 aa22.69■■□□□ 1.22
SHKBP1-214ENST00000597396 SLKQ9H2G2 1235 aaPredicted RBP22.69■■□□□ 1.22
SHKBP1-214ENST00000597396 TPCN1Q9ULQ1 816 aa22.69■■□□□ 1.22
SHKBP1-214ENST00000597396 CNPY2Q9Y2B0 182 aa22.69■■□□□ 1.22
SHKBP1-214ENST00000597396 OPLAHO14841 1288 aa22.68■■□□□ 1.22
SHKBP1-214ENST00000597396 GJB1P08034 283 aa22.68■■□□□ 1.22
SHKBP1-214ENST00000597396 CYBAP13498 195 aa22.68■■□□□ 1.22
SHKBP1-214ENST00000597396 ALDH5A1P51649 535 aaPredicted RBP22.68■■□□□ 1.22
SHKBP1-214ENST00000597396 PRAMEF19Q5SWL8 479 aa22.68■■□□□ 1.22
SHKBP1-214ENST00000597396 SYTL5Q8TDW5 730 aaPredicted RBP22.68■■□□□ 1.22
SHKBP1-214ENST00000597396 GPKOWQ92917 476 aaPredicted RBP eCLIP22.68■■□□□ 1.22
SHKBP1-214ENST00000597396 DEFB118Q96PH6 123 aa22.68■■□□□ 1.22
SHKBP1-214ENST00000597396 MPHOSPH6Q99547 160 aaKnown RBP22.68■■□□□ 1.22
SHKBP1-214ENST00000597396 PAK6Q9NQU5 681 aaPredicted RBP22.68■■□□□ 1.22
SHKBP1-214ENST00000597396 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.68■■□□□ 1.22
SHKBP1-214ENST00000597396 RBM27Q9P2N5 1060 aaKnown RBP22.68■■□□□ 1.22
SHKBP1-214ENST00000597396 GCOM1H8Y6P7 765 aaPredicted RBP22.67■■□□□ 1.22
SHKBP1-214ENST00000597396 POLR2MP0CAP2 368 aa22.67■■□□□ 1.22
SHKBP1-214ENST00000597396 IFNAR1P17181 557 aa22.67■■□□□ 1.22
SHKBP1-214ENST00000597396 SAMD3Q8N6K7 520 aa22.67■■□□□ 1.22
SHKBP1-214ENST00000597396 TRPV1Q8NER1 839 aa22.67■■□□□ 1.22
SHKBP1-214ENST00000597396 DNERQ8NFT8 737 aa22.67■■□□□ 1.22
SHKBP1-214ENST00000597396 PHKBQ93100 1093 aa22.67■■□□□ 1.22
SHKBP1-214ENST00000597396 TBC1D32Q96NH3 1257 aa22.67■■□□□ 1.22
SHKBP1-214ENST00000597396 MAP3K20Q9NYL2 800 aaKnown RBP22.67■■□□□ 1.22
SHKBP1-214ENST00000597396 NRBP1Q9UHY1 535 aa22.67■■□□□ 1.22
SHKBP1-214ENST00000597396 ASTN1O14525 1302 aa22.66■■□□□ 1.22
SHKBP1-214ENST00000597396 B4DLN1 442 aa22.66■■□□□ 1.22
SHKBP1-214ENST00000597396 PRPF3O43395 683 aaKnown RBP22.66■■□□□ 1.22
SHKBP1-214ENST00000597396 SNAI1O95863 264 aaPredicted RBP22.66■■□□□ 1.22
SHKBP1-214ENST00000597396 HSD17B4P51659 736 aa22.66■■□□□ 1.22
SHKBP1-214ENST00000597396 MRPL12P52815 198 aaKnown RBP22.66■■□□□ 1.22
SHKBP1-214ENST00000597396 RABEP1Q15276 862 aa22.66■■□□□ 1.22
SHKBP1-214ENST00000597396 NTRK3Q16288 839 aa22.66■■□□□ 1.22
SHKBP1-214ENST00000597396 CUL5Q93034 780 aa22.66■■□□□ 1.22
SHKBP1-214ENST00000597396 SLC26A6Q9BXS9 759 aa22.66■■□□□ 1.22
SHKBP1-214ENST00000597396 RNF26Q9BY78 433 aaPredicted RBP22.66■■□□□ 1.22
SHKBP1-214ENST00000597396 ZHX1Q9UKY1 873 aaPredicted RBP22.66■■□□□ 1.22
SHKBP1-214ENST00000597396 KIAA1217Q5T5P2 1943 aa22.65■■□□□ 1.22
SHKBP1-214ENST00000597396 LOC102724159A0A0B4J2E5 919 aa22.65■■□□□ 1.22
SHKBP1-214ENST00000597396 hCG_1984214I3L0E3 225 aa22.65■■□□□ 1.22
SHKBP1-214ENST00000597396 PFKFB2O60825 505 aa22.65■■□□□ 1.22
SHKBP1-214ENST00000597396 HOXA13P31271 388 aaPredicted RBP22.65■■□□□ 1.22
SHKBP1-214ENST00000597396 NAPAP54920 295 aa22.65■■□□□ 1.22
SHKBP1-214ENST00000597396 GHRHRQ02643 423 aa22.65■■□□□ 1.22
SHKBP1-214ENST00000597396 PWP2Q15269 919 aaKnown RBP22.65■■□□□ 1.22
SHKBP1-214ENST00000597396 WWC2Q6AWC2 1192 aa22.65■■□□□ 1.22
SHKBP1-214ENST00000597396 TRIM22Q8IYM9 498 aa22.65■■□□□ 1.22
SHKBP1-214ENST00000597396 ZNF713Q8N859 430 aaPredicted RBP22.65■■□□□ 1.22
SHKBP1-214ENST00000597396 U2AF1L4Q8WU68 220 aaKnown RBP22.65■■□□□ 1.22
SHKBP1-214ENST00000597396 TAAR1Q96RJ0 339 aa22.65■■□□□ 1.22
SHKBP1-214ENST00000597396 ABHD16BQ9H3Z7 469 aa22.65■■□□□ 1.22
SHKBP1-214ENST00000597396 COL20A1Q9P218 1284 aa22.65■■□□□ 1.22
SHKBP1-214ENST00000597396 MSCO60682 206 aa22.64■■□□□ 1.21
SHKBP1-214ENST00000597396 PPFIA3O75145 1194 aa22.64■■□□□ 1.21
SHKBP1-214ENST00000597396 SGPL1O95470 568 aa22.64■■□□□ 1.21
SHKBP1-214ENST00000597396 SCG2P13521 617 aa22.64■■□□□ 1.21
SHKBP1-214ENST00000597396 GJA8P48165 433 aa22.64■■□□□ 1.21
SHKBP1-214ENST00000597396 SSRP1Q08945 709 aaKnown RBP22.64■■□□□ 1.21
SHKBP1-214ENST00000597396 SCRN1Q12765 414 aa22.64■■□□□ 1.21
SHKBP1-214ENST00000597396 PFKFB3Q16875 520 aaPredicted RBP22.64■■□□□ 1.21
SHKBP1-214ENST00000597396 FCHSD1Q86WN1 690 aa22.64■■□□□ 1.21
SHKBP1-214ENST00000597396 SMARCC2Q8TAQ2 1214 aa22.64■■□□□ 1.21
SHKBP1-214ENST00000597396 RMDN3Q96TC7 470 aa22.64■■□□□ 1.21
SHKBP1-214ENST00000597396 DDX20Q9UHI6 824 aaKnown RBP22.64■■□□□ 1.21
SHKBP1-214ENST00000597396 DDX49Q9Y6V7 483 aaKnown RBP22.64■■□□□ 1.21
SHKBP1-214ENST00000597396 SEPT4O43236 478 aa22.63■■□□□ 1.21
SHKBP1-214ENST00000597396 CDKL5O76039 1030 aa22.63■■□□□ 1.21
SHKBP1-214ENST00000597396 TFRCP02786 760 aaKnown RBP22.63■■□□□ 1.21
SHKBP1-214ENST00000597396 ZNF865P0CJ78 1059 aaPredicted RBP22.63■■□□□ 1.21
SHKBP1-214ENST00000597396 PDE4DQ08499 809 aa22.63■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 154.1 ms