RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 ZNF865P0CJ78 1059 aaPredicted RBP10.85□□□□□ -0.67
LDLR-211ENST00000560173 CAPN2P17655 700 aa10.85□□□□□ -0.67
LDLR-211ENST00000560173 RPS6P62753 249 aaKnown RBP10.85□□□□□ -0.67
LDLR-211ENST00000560173 GHRHRQ02643 423 aa10.85□□□□□ -0.67
LDLR-211ENST00000560173 APOBRQ0VD83 1088 aa10.85□□□□□ -0.67
LDLR-211ENST00000560173 RTN1Q16799 776 aa10.85□□□□□ -0.67
LDLR-211ENST00000560173 CHRDL2Q6WN34 429 aa10.85□□□□□ -0.67
LDLR-211ENST00000560173 RNF207Q6ZRF8 634 aa10.85□□□□□ -0.67
LDLR-211ENST00000560173 ARMCX2Q7L311 632 aa10.85□□□□□ -0.67
LDLR-211ENST00000560173 UBE2Q1Q7Z7E8 422 aa10.85□□□□□ -0.67
LDLR-211ENST00000560173 CMTR1Q8N1G2 835 aaKnown RBP10.85□□□□□ -0.67
LDLR-211ENST00000560173 PIBF1Q8WXW3 757 aa10.85□□□□□ -0.67
LDLR-211ENST00000560173 RRP36Q96EU6 259 aaKnown RBP10.85□□□□□ -0.67
LDLR-211ENST00000560173 PURBQ96QR8 312 aaKnown RBP10.85□□□□□ -0.67
LDLR-211ENST00000560173 UPF3BQ9BZI7 483 aaKnown RBP10.85□□□□□ -0.67
LDLR-211ENST00000560173 FAM217BQ9NTX9 383 aaPredicted RBP10.85□□□□□ -0.67
LDLR-211ENST00000560173 RBM28Q9NW13 759 aaKnown RBP10.85□□□□□ -0.67
LDLR-211ENST00000560173 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.85□□□□□ -0.67
LDLR-211ENST00000560173 DDX20Q9UHI6 824 aaKnown RBP10.85□□□□□ -0.67
LDLR-211ENST00000560173 OGDHLQ9ULD0 1010 aa10.85□□□□□ -0.67
LDLR-211ENST00000560173 CNPY2Q9Y2B0 182 aa10.85□□□□□ -0.67
LDLR-211ENST00000560173 MRPL11Q9Y3B7 192 aaKnown RBP10.85□□□□□ -0.67
LDLR-211ENST00000560173 PCDHA1Q9Y5I3 950 aa10.85□□□□□ -0.67
LDLR-211ENST00000560173 CYP46A1Q9Y6A2 500 aa10.85□□□□□ -0.67
LDLR-211ENST00000560173 MYH6P13533 1939 aa10.85□□□□□ -0.67
LDLR-211ENST00000560173 CNTNAP5Q8WYK1 1306 aa10.84□□□□□ -0.67
LDLR-211ENST00000560173 ASB14A6NK59 587 aa10.84□□□□□ -0.67
LDLR-211ENST00000560173 SEPT4O43236 478 aa10.84□□□□□ -0.67
LDLR-211ENST00000560173 MSCO60682 206 aa10.84□□□□□ -0.67
LDLR-211ENST00000560173 TFRCP02786 760 aaKnown RBP10.84□□□□□ -0.67
LDLR-211ENST00000560173 CALML3P27482 149 aa10.84□□□□□ -0.67
LDLR-211ENST00000560173 CNGA1P29973 690 aa10.84□□□□□ -0.67
LDLR-211ENST00000560173 ALDH5A1P51649 535 aaPredicted RBP10.84□□□□□ -0.67
LDLR-211ENST00000560173 EVCP57679 992 aa10.84□□□□□ -0.67
LDLR-211ENST00000560173 FUT2Q10981 343 aa10.84□□□□□ -0.67
LDLR-211ENST00000560173 TRAF1Q13077 416 aa10.84□□□□□ -0.67
LDLR-211ENST00000560173 TOB2Q14106 344 aaPredicted RBP10.84□□□□□ -0.67
LDLR-211ENST00000560173 MCF2L2Q86YR7 1114 aa10.84□□□□□ -0.67
LDLR-211ENST00000560173 SYTL5Q8TDW5 730 aaPredicted RBP10.84□□□□□ -0.67
LDLR-211ENST00000560173 MORC4Q8TE76 937 aa10.84□□□□□ -0.67
LDLR-211ENST00000560173 TBC1D5Q92609 795 aa10.84□□□□□ -0.67
LDLR-211ENST00000560173 KATNBL1Q9H079 304 aa10.84□□□□□ -0.67
LDLR-211ENST00000560173 RBM27Q9P2N5 1060 aaKnown RBP10.84□□□□□ -0.67
LDLR-211ENST00000560173 ADD3Q9UEY8 706 aaKnown RBP10.84□□□□□ -0.67
LDLR-211ENST00000560173 DDX49Q9Y6V7 483 aaKnown RBP10.84□□□□□ -0.67
LDLR-211ENST00000560173 MCM3APO60318 1980 aa10.84□□□□□ -0.67
LDLR-211ENST00000560173 LRRC37A2A6NM11 1700 aa10.84□□□□□ -0.67
LDLR-211ENST00000560173 LOC102724159A0A0B4J2E5 919 aa10.83□□□□□ -0.68
LDLR-211ENST00000560173 FARP2O94887 1054 aaPredicted RBP10.83□□□□□ -0.68
LDLR-211ENST00000560173 CDC27P30260 824 aa10.83□□□□□ -0.68
LDLR-211ENST00000560173 MNX1P50219 401 aaPredicted RBP10.83□□□□□ -0.68
LDLR-211ENST00000560173 METAP2P50579 478 aaKnown RBP eCLIP10.83□□□□□ -0.68
LDLR-211ENST00000560173 HSD17B4P51659 736 aa10.83□□□□□ -0.68
LDLR-211ENST00000560173 ACVR2BQ13705 512 aa10.83□□□□□ -0.68
LDLR-211ENST00000560173 PWP2Q15269 919 aaKnown RBP10.83□□□□□ -0.68
LDLR-211ENST00000560173 ANKLE1Q8NAG6 615 aa10.83□□□□□ -0.68
LDLR-211ENST00000560173 ABHD16BQ9H3Z7 469 aa10.83□□□□□ -0.68
LDLR-211ENST00000560173 PDRG1Q9NUG6 133 aa10.83□□□□□ -0.68
LDLR-211ENST00000560173 COL20A1Q9P218 1284 aa10.83□□□□□ -0.68
LDLR-211ENST00000560173 SEC63Q9UGP8 760 aaKnown RBP10.83□□□□□ -0.68
LDLR-211ENST00000560173 ZHX1Q9UKY1 873 aaPredicted RBP10.83□□□□□ -0.68
LDLR-211ENST00000560173 NAP1L2Q9ULW6 460 aaPredicted RBP10.83□□□□□ -0.68
LDLR-211ENST00000560173 FRMPD3Q5JV73 1810 aa10.82□□□□□ -0.68
LDLR-211ENST00000560173 hCG_1642624A0A1W2PR95 340 aa10.82□□□□□ -0.68
LDLR-211ENST00000560173 AKR1A1P14550 325 aa10.82□□□□□ -0.68
LDLR-211ENST00000560173 EDNRBP24530 442 aa10.82□□□□□ -0.68
LDLR-211ENST00000560173 PPP2R5BQ15173 497 aa10.82□□□□□ -0.68
LDLR-211ENST00000560173 CCDC82Q8N4S0 544 aa10.82□□□□□ -0.68
LDLR-211ENST00000560173 DNERQ8NFT8 737 aa10.82□□□□□ -0.68
LDLR-211ENST00000560173 DIS3LQ8TF46 1054 aaKnown RBP10.82□□□□□ -0.68
LDLR-211ENST00000560173 CCDC196A0A1B0GTZ2 297 aa10.81□□□□□ -0.68
LDLR-211ENST00000560173 CFBP00751 764 aa10.81□□□□□ -0.68
LDLR-211ENST00000560173 PDIA3P30101 505 aaKnown RBP10.81□□□□□ -0.68
LDLR-211ENST00000560173 ADD1P35611 737 aaKnown RBP10.81□□□□□ -0.68
LDLR-211ENST00000560173 CCDC144BQ3MJ40 725 aa10.81□□□□□ -0.68
LDLR-211ENST00000560173 ANO1Q5XXA6 986 aa10.81□□□□□ -0.68
LDLR-211ENST00000560173 FBXO16Q8IX29 292 aaPredicted RBP10.81□□□□□ -0.68
LDLR-211ENST00000560173 SAMD3Q8N6K7 520 aa10.81□□□□□ -0.68
LDLR-211ENST00000560173 LENG1Q96BZ8 264 aaPredicted RBP10.81□□□□□ -0.68
LDLR-211ENST00000560173 TAAR1Q96RJ0 339 aa10.81□□□□□ -0.68
LDLR-211ENST00000560173 ALDH8A1Q9H2A2 487 aaPredicted RBP10.81□□□□□ -0.68
LDLR-211ENST00000560173 VTA1Q9NP79 307 aa10.81□□□□□ -0.68
LDLR-211ENST00000560173 MAP3K20Q9NYL2 800 aaKnown RBP10.81□□□□□ -0.68
LDLR-211ENST00000560173 FAM184BQ9ULE4 1060 aa10.81□□□□□ -0.68
LDLR-211ENST00000560173 RBM19Q9Y4C8 960 aaKnown RBP10.81□□□□□ -0.68
LDLR-211ENST00000560173 CUL9Q8IWT3 2517 aa10.81□□□□□ -0.68
LDLR-211ENST00000560173 GCOM1H8Y6P7 765 aaPredicted RBP10.8□□□□□ -0.68
LDLR-211ENST00000560173 ADCY6O43306 1168 aa10.8□□□□□ -0.68
LDLR-211ENST00000560173 POLR2MP0CAP2 368 aa10.8□□□□□ -0.68
LDLR-211ENST00000560173 RARBP10826 455 aa10.8□□□□□ -0.68
LDLR-211ENST00000560173 COL6A1P12109 1028 aa10.8□□□□□ -0.68
LDLR-211ENST00000560173 HOXA13P31271 388 aaPredicted RBP10.8□□□□□ -0.68
LDLR-211ENST00000560173 PDE4DQ08499 809 aa10.8□□□□□ -0.68
LDLR-211ENST00000560173 WWC2Q6AWC2 1192 aa10.8□□□□□ -0.68
LDLR-211ENST00000560173 TAPT1Q6NXT6 567 aa10.8□□□□□ -0.68
LDLR-211ENST00000560173 HEATR3Q7Z4Q2 680 aa10.8□□□□□ -0.68
LDLR-211ENST00000560173 NSUN6Q8TEA1 469 aaKnown RBP10.8□□□□□ -0.68
LDLR-211ENST00000560173 GPKOWQ92917 476 aaPredicted RBP eCLIP10.8□□□□□ -0.68
LDLR-211ENST00000560173 ZNF274Q96GC6 653 aaPredicted RBP10.8□□□□□ -0.68
LDLR-211ENST00000560173 PAWRQ96IZ0 340 aaKnown RBP10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 120 ms