RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 LNPKQ9C0E8 428 aa10□□□□□ -0.81
USP28-215ENST00000545608 SEMA6BQ9H3T3 888 aa10□□□□□ -0.81
USP28-215ENST00000545608 SPC25Q9HBM1 224 aa10□□□□□ -0.81
USP28-215ENST00000545608 TOMM22Q9NS69 142 aa10□□□□□ -0.81
USP28-215ENST00000545608 ELP1O95163 1332 aa10□□□□□ -0.81
USP28-215ENST00000545608 MYH4Q9Y623 1939 aa9.99□□□□□ -0.81
USP28-215ENST00000545608 ASB14A6NK59 587 aa9.99□□□□□ -0.81
USP28-215ENST00000545608 ARVCFO00192 962 aa9.99□□□□□ -0.81
USP28-215ENST00000545608 TRIM66O15016 1216 aa9.99□□□□□ -0.81
USP28-215ENST00000545608 SEC24BO95487 1268 aa9.99□□□□□ -0.81
USP28-215ENST00000545608 TIMP1P01033 207 aa9.99□□□□□ -0.81
USP28-215ENST00000545608 TOP1P11387 765 aaKnown RBP9.99□□□□□ -0.81
USP28-215ENST00000545608 SMPD1P17405 629 aa9.99□□□□□ -0.81
USP28-215ENST00000545608 HAND2P61296 217 aa9.99□□□□□ -0.81
USP28-215ENST00000545608 TNFAIP2Q03169 654 aa9.99□□□□□ -0.81
USP28-215ENST00000545608 FPGSQ05932 587 aa9.99□□□□□ -0.81
USP28-215ENST00000545608 BTNL9Q6UXG8 535 aa9.99□□□□□ -0.81
USP28-215ENST00000545608 NOL8Q76FK4 1167 aaKnown RBP9.99□□□□□ -0.81
USP28-215ENST00000545608 EEPD1Q7L9B9 569 aa9.99□□□□□ -0.81
USP28-215ENST00000545608 DCAF4Q8WV16 495 aa9.99□□□□□ -0.81
USP28-215ENST00000545608 RNPC3Q96LT9 517 aaKnown RBP9.99□□□□□ -0.81
USP28-215ENST00000545608 CDX2Q99626 313 aaPredicted RBP9.99□□□□□ -0.81
USP28-215ENST00000545608 TMEM47Q9BQJ4 181 aa9.99□□□□□ -0.81
USP28-215ENST00000545608 RANBP17Q9H2T7 1088 aaKnown RBP9.99□□□□□ -0.81
USP28-215ENST00000545608 TTYH1Q9H313 450 aaPredicted RBP9.99□□□□□ -0.81
USP28-215ENST00000545608 PDGFCQ9NRA1 345 aa9.99□□□□□ -0.81
USP28-215ENST00000545608 TCP11L1Q9NUJ3 509 aa9.99□□□□□ -0.81
USP28-215ENST00000545608 CYP39A1Q9NYL5 469 aa9.99□□□□□ -0.81
USP28-215ENST00000545608 TBX21Q9UL17 535 aa9.99□□□□□ -0.81
USP28-215ENST00000545608 CCPG1Q9ULG6 757 aa9.99□□□□□ -0.81
USP28-215ENST00000545608 GNEQ9Y223 722 aaKnown RBP9.99□□□□□ -0.81
USP28-215ENST00000545608 A0A0U1RQG5 324 aaPredicted RBP9.98□□□□□ -0.81
USP28-215ENST00000545608 TRIM6-TRIM34B2RNG4 842 aa9.98□□□□□ -0.81
USP28-215ENST00000545608 DYNC1LI2O43237 492 aaPredicted RBP9.98□□□□□ -0.81
USP28-215ENST00000545608 ICAM1P05362 532 aa9.98□□□□□ -0.81
USP28-215ENST00000545608 CENPBP07199 599 aaPredicted RBP9.98□□□□□ -0.81
USP28-215ENST00000545608 BAATQ14032 418 aaPredicted RBP9.98□□□□□ -0.81
USP28-215ENST00000545608 SYDE2Q5VT97 1194 aa9.98□□□□□ -0.81
USP28-215ENST00000545608 B4GALNT3Q6L9W6 998 aa9.98□□□□□ -0.81
USP28-215ENST00000545608 TAPT1Q6NXT6 567 aa9.98□□□□□ -0.81
USP28-215ENST00000545608 CXCL17Q6UXB2 119 aa9.98□□□□□ -0.81
USP28-215ENST00000545608 NSMFQ6X4W1 530 aa9.98□□□□□ -0.81
USP28-215ENST00000545608 C16orf59Q7L2K0 433 aa9.98□□□□□ -0.81
USP28-215ENST00000545608 FAM126BQ8IXS8 530 aa9.98□□□□□ -0.81
USP28-215ENST00000545608 SMC5Q8IY18 1101 aa9.98□□□□□ -0.81
USP28-215ENST00000545608 RILPL2Q969X0 211 aa9.98□□□□□ -0.81
USP28-215ENST00000545608 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.98□□□□□ -0.81
USP28-215ENST00000545608 GPCPD1Q9NPB8 672 aa9.98□□□□□ -0.81
USP28-215ENST00000545608 FRMPD2Q68DX3 1309 aaPredicted RBP9.98□□□□□ -0.81
USP28-215ENST00000545608 NFIBO00712 420 aa9.97□□□□□ -0.81
USP28-215ENST00000545608 CD4P01730 458 aa9.97□□□□□ -0.81
USP28-215ENST00000545608 IGHDP01880 384 aa9.97□□□□□ -0.81
USP28-215ENST00000545608 SDSP20132 328 aa9.97□□□□□ -0.81
USP28-215ENST00000545608 PDE4DQ08499 809 aa9.97□□□□□ -0.81
USP28-215ENST00000545608 AKNAD1Q5T1N1 836 aa9.97□□□□□ -0.81
USP28-215ENST00000545608 IQSEC1Q6DN90 963 aa9.97□□□□□ -0.81
USP28-215ENST00000545608 MFSD5Q6N075 450 aa9.97□□□□□ -0.81
USP28-215ENST00000545608 TLK2Q86UE8 772 aa9.97□□□□□ -0.81
USP28-215ENST00000545608 TICAM2Q86XR7 235 aa9.97□□□□□ -0.81
USP28-215ENST00000545608 TBC1D10CQ8IV04 446 aa9.97□□□□□ -0.81
USP28-215ENST00000545608 PLEKHM2Q8IWE5 1019 aa9.97□□□□□ -0.81
USP28-215ENST00000545608 FBXO16Q8IX29 292 aaPredicted RBP9.97□□□□□ -0.81
USP28-215ENST00000545608 SLC43A3Q8NBI5 491 aa9.97□□□□□ -0.81
USP28-215ENST00000545608 MORC4Q8TE76 937 aa9.97□□□□□ -0.81
USP28-215ENST00000545608 MYLIPQ8WY64 445 aa9.97□□□□□ -0.81
USP28-215ENST00000545608 GRIN2DO15399 1336 aa9.97□□□□□ -0.81
USP28-215ENST00000545608 MROH7Q68CQ1 1323 aa9.97□□□□□ -0.81
USP28-215ENST00000545608 CCDC171Q6TFL3 1326 aa9.97□□□□□ -0.81
USP28-215ENST00000545608 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.96□□□□□ -0.82
USP28-215ENST00000545608 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.96□□□□□ -0.82
USP28-215ENST00000545608 ACRP10323 421 aa9.96□□□□□ -0.82
USP28-215ENST00000545608 PDHBP11177 359 aa9.96□□□□□ -0.82
USP28-215ENST00000545608 CSF2RAP15509 400 aa9.96□□□□□ -0.82
USP28-215ENST00000545608 ZNF543Q08ER8 600 aa9.96□□□□□ -0.82
USP28-215ENST00000545608 FSCN1Q16658 493 aaKnown RBP9.96□□□□□ -0.82
USP28-215ENST00000545608 TMEM240Q5SV17 173 aa9.96□□□□□ -0.82
USP28-215ENST00000545608 MFSD6Q6ZSS7 791 aa9.96□□□□□ -0.82
USP28-215ENST00000545608 KIAA1211Q6ZU35 1233 aa9.96□□□□□ -0.82
USP28-215ENST00000545608 CHD1LQ86WJ1 897 aa9.96□□□□□ -0.82
USP28-215ENST00000545608 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.96□□□□□ -0.82
USP28-215ENST00000545608 OXER1Q8TDS5 423 aa9.96□□□□□ -0.82
USP28-215ENST00000545608 CLEC4DQ8WXI8 215 aa9.96□□□□□ -0.82
USP28-215ENST00000545608 TTC14Q96N46 770 aa9.96□□□□□ -0.82
USP28-215ENST00000545608 PPP1R12CQ9BZL4 782 aa9.96□□□□□ -0.82
USP28-215ENST00000545608 AP5M1Q9H0R1 490 aa9.96□□□□□ -0.82
USP28-215ENST00000545608 KDM4CQ9H3R0 1056 aa9.96□□□□□ -0.82
USP28-215ENST00000545608 RWDD1Q9H446 243 aaPredicted RBP9.96□□□□□ -0.82
USP28-215ENST00000545608 Q9Y3F1 56 aa9.96□□□□□ -0.82
USP28-215ENST00000545608 ZMYM6O95789 1325 aa9.96□□□□□ -0.82
USP28-215ENST00000545608 MCM3APO60318 1980 aa9.95□□□□□ -0.82
USP28-215ENST00000545608 PTPDC1A2A3K4 754 aa9.95□□□□□ -0.82
USP28-215ENST00000545608 TLR3O15455 904 aaKnown RBP9.95□□□□□ -0.82
USP28-215ENST00000545608 CABYRO75952 493 aa9.95□□□□□ -0.82
USP28-215ENST00000545608 SNHG28P0DPA3 235 aa9.95□□□□□ -0.82
USP28-215ENST00000545608 CYP2C18P33260 490 aa9.95□□□□□ -0.82
USP28-215ENST00000545608 ALDH5A1P51649 535 aaPredicted RBP9.95□□□□□ -0.82
USP28-215ENST00000545608 PSMC6P62333 389 aa9.95□□□□□ -0.82
USP28-215ENST00000545608 PPIGQ13427 754 aaKnown RBP eCLIP9.95□□□□□ -0.82
USP28-215ENST00000545608 ITGA7Q13683 1181 aa9.95□□□□□ -0.82
USP28-215ENST00000545608 ZNF365Q70YC5 407 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms