RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 PDE4DQ08499 809 aa15.24■□□□□ 0.03
CPSF1-204ENST00000529288 PPIGQ13427 754 aaKnown RBP eCLIP15.24■□□□□ 0.032e-14■■□□□ 12
CPSF1-204ENST00000529288 FAM126BQ8IXS8 530 aa15.24■□□□□ 0.03
CPSF1-204ENST00000529288 CLEC4DQ8WXI8 215 aa15.24■□□□□ 0.03
CPSF1-204ENST00000529288 MYLIPQ8WY64 445 aa15.24■□□□□ 0.03
CPSF1-204ENST00000529288 VAT1LQ9HCJ6 419 aa15.24■□□□□ 0.03
CPSF1-204ENST00000529288 SUPT16HQ9Y5B9 1047 aaKnown RBP15.24■□□□□ 0.03
CPSF1-204ENST00000529288 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.23■□□□□ 0.03
CPSF1-204ENST00000529288 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.23■□□□□ 0.03
CPSF1-204ENST00000529288 RPS6P62753 249 aaKnown RBP15.23■□□□□ 0.03
CPSF1-204ENST00000529288 IMMTQ16891 758 aaKnown RBP15.23■□□□□ 0.03
CPSF1-204ENST00000529288 CCDC178Q5BJE1 867 aa15.23■□□□□ 0.03
CPSF1-204ENST00000529288 DGKHQ86XP1 1220 aa15.23■□□□□ 0.03
CPSF1-204ENST00000529288 PNMA1Q8ND90 353 aa15.23■□□□□ 0.03
CPSF1-204ENST00000529288 OR6J1Q8NGC5 347 aa15.23■□□□□ 0.03
CPSF1-204ENST00000529288 MPHOSPH6Q99547 160 aaKnown RBP15.23■□□□□ 0.03
CPSF1-204ENST00000529288 TRPV6Q9H1D0 765 aa15.23■□□□□ 0.03
CPSF1-204ENST00000529288 TTYH1Q9H313 450 aaPredicted RBP15.23■□□□□ 0.03
CPSF1-204ENST00000529288 PNMA2Q9UL42 364 aa15.23■□□□□ 0.03
CPSF1-204ENST00000529288 CCL23P55773 120 aa15.22■□□□□ 0.03
CPSF1-204ENST00000529288 CHMP4BP1P59074 171 aa15.22■□□□□ 0.03
CPSF1-204ENST00000529288 NKX3-2P78367 333 aa15.22■□□□□ 0.03
CPSF1-204ENST00000529288 IRX6P78412 446 aaPredicted RBP15.22■□□□□ 0.03
CPSF1-204ENST00000529288 DUSP28Q4G0W2 176 aa15.22■□□□□ 0.03
CPSF1-204ENST00000529288 GPATCH4Q5T3I0 446 aaKnown RBP15.22■□□□□ 0.03
CPSF1-204ENST00000529288 MORC4Q8TE76 937 aa15.22■□□□□ 0.03
CPSF1-204ENST00000529288 ZSCAN10Q96SZ4 725 aaPredicted RBP15.22■□□□□ 0.03
CPSF1-204ENST00000529288 HIPK3Q9H422 1215 aa15.22■□□□□ 0.03
CPSF1-204ENST00000529288 GPHNQ9NQX3 736 aaPredicted RBP15.22■□□□□ 0.03
CPSF1-204ENST00000529288 CTNNA3Q9UI47 895 aa15.22■□□□□ 0.03
CPSF1-204ENST00000529288 Q9Y3F1 56 aa15.22■□□□□ 0.03
CPSF1-204ENST00000529288 COL6A3P12111 3177 aa15.22■□□□□ 0.03
CPSF1-204ENST00000529288 GRXCR1A8MXD5 290 aa15.21■□□□□ 0.03
CPSF1-204ENST00000529288 CD4P01730 458 aa15.21■□□□□ 0.03
CPSF1-204ENST00000529288 SNHG28P0DPA3 235 aa15.21■□□□□ 0.03
CPSF1-204ENST00000529288 CDC37Q16543 378 aaPredicted RBP15.21■□□□□ 0.03
CPSF1-204ENST00000529288 TMEM240Q5SV17 173 aa15.21■□□□□ 0.03
CPSF1-204ENST00000529288 ZNF365Q70YC5 407 aa15.21■□□□□ 0.03
CPSF1-204ENST00000529288 C16orf59Q7L2K0 433 aa15.21■□□□□ 0.03
CPSF1-204ENST00000529288 PPP1R13LQ8WUF5 828 aa15.21■□□□□ 0.03
CPSF1-204ENST00000529288 UBAC1Q9BSL1 405 aa15.21■□□□□ 0.03
CPSF1-204ENST00000529288 DSCC1Q9BVC3 393 aa15.21■□□□□ 0.03
CPSF1-204ENST00000529288 ZSWIM5Q9P217 1185 aa15.21■□□□□ 0.03
CPSF1-204ENST00000529288 GRIN2DO15399 1336 aa15.2■□□□□ 0.02
CPSF1-204ENST00000529288 TNKSO95271 1327 aa15.2■□□□□ 0.02
CPSF1-204ENST00000529288 UMODL1Q5DID0 1318 aa15.2■□□□□ 0.02
CPSF1-204ENST00000529288 WDR19Q8NEZ3 1342 aa15.2■□□□□ 0.02
CPSF1-204ENST00000529288 B4DLN1 442 aa15.2■□□□□ 0.02
CPSF1-204ENST00000529288 B4GALT4O60513 344 aa15.2■□□□□ 0.02
CPSF1-204ENST00000529288 FOSL2P15408 326 aa15.2■□□□□ 0.02
CPSF1-204ENST00000529288 DNAJB2P25686 324 aa15.2■□□□□ 0.02
CPSF1-204ENST00000529288 CPT1AP50416 773 aa15.2■□□□□ 0.02
CPSF1-204ENST00000529288 MRPL12P52815 198 aaKnown RBP15.2■□□□□ 0.02
CPSF1-204ENST00000529288 PPP2R5BQ15173 497 aa15.2■□□□□ 0.02
CPSF1-204ENST00000529288 BRDTQ58F21 947 aaPredicted RBP15.2■□□□□ 0.02
CPSF1-204ENST00000529288 FAM47CQ5HY64 1035 aa15.2■□□□□ 0.02
CPSF1-204ENST00000529288 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.2■□□□□ 0.02
CPSF1-204ENST00000529288 ADGRF4Q8IZF3 695 aa15.2■□□□□ 0.02
CPSF1-204ENST00000529288 SLC43A3Q8NBI5 491 aa15.2■□□□□ 0.02
CPSF1-204ENST00000529288 MAFAQ8NHW3 353 aaPredicted RBP15.2■□□□□ 0.02
CPSF1-204ENST00000529288 TBC1D5Q92609 795 aa15.2■□□□□ 0.02
CPSF1-204ENST00000529288 COPS5Q92905 334 aa15.2■□□□□ 0.02
CPSF1-204ENST00000529288 KRT23Q9C075 422 aa15.2■□□□□ 0.02
CPSF1-204ENST00000529288 POLR3EQ9NVU0 708 aa15.2■□□□□ 0.02
CPSF1-204ENST00000529288 FGBP02675 491 aa15.19■□□□□ 0.02
CPSF1-204ENST00000529288 PARP1P09874 1014 aaKnown RBP15.19■□□□□ 0.02
CPSF1-204ENST00000529288 TXNP10599 105 aaKnown RBP15.19■□□□□ 0.02
CPSF1-204ENST00000529288 IFIT1BQ5T764 474 aaKnown RBP15.19■□□□□ 0.02
CPSF1-204ENST00000529288 PSRC1Q6PGN9 363 aaPredicted RBP15.19■□□□□ 0.02
CPSF1-204ENST00000529288 ENAHQ8N8S7 591 aaPredicted RBP15.19■□□□□ 0.02
CPSF1-204ENST00000529288 TIFAQ96CG3 184 aa15.19■□□□□ 0.02
CPSF1-204ENST00000529288 IL23AQ9NPF7 189 aa15.19■□□□□ 0.02
CPSF1-204ENST00000529288 LAMA2P24043 3122 aaKnown RBP15.19■□□□□ 0.02
CPSF1-204ENST00000529288 MCM3APO60318 1980 aa15.18■□□□□ 0.02
CPSF1-204ENST00000529288 LOC102724159A0A0B4J2E5 919 aa15.18■□□□□ 0.02
CPSF1-204ENST00000529288 CYP2C9P11712 490 aa15.18■□□□□ 0.02
CPSF1-204ENST00000529288 PDE4AP27815 886 aa15.18■□□□□ 0.02
CPSF1-204ENST00000529288 PBX2P40425 430 aa15.18■□□□□ 0.02
CPSF1-204ENST00000529288 GRIN2CQ14957 1233 aa15.18■□□□□ 0.02
CPSF1-204ENST00000529288 PWP2Q15269 919 aaKnown RBP15.18■□□□□ 0.02
CPSF1-204ENST00000529288 QRICH1Q2TAL8 776 aa15.18■□□□□ 0.02
CPSF1-204ENST00000529288 ASPRV1Q53RT3 343 aa15.18■□□□□ 0.02
CPSF1-204ENST00000529288 SEPT14Q6ZU15 432 aa15.18■□□□□ 0.02
CPSF1-204ENST00000529288 OTOP2Q7RTS6 562 aa15.18■□□□□ 0.02
CPSF1-204ENST00000529288 FBXO11Q86XK2 927 aa15.18■□□□□ 0.02
CPSF1-204ENST00000529288 DNERQ8NFT8 737 aa15.18■□□□□ 0.02
CPSF1-204ENST00000529288 SCFD2Q8WU76 684 aa15.18■□□□□ 0.02
CPSF1-204ENST00000529288 TAAR1Q96RJ0 339 aa15.18■□□□□ 0.02
CPSF1-204ENST00000529288 MTG1Q9BT17 334 aaPredicted RBP15.18■□□□□ 0.02
CPSF1-204ENST00000529288 CNNM2Q9H8M5 875 aa15.18■□□□□ 0.02
CPSF1-204ENST00000529288 TRMT13Q9NUP7 481 aaKnown RBP15.18■□□□□ 0.02
CPSF1-204ENST00000529288 ABCB11O95342 1321 aa15.17■□□□□ 0.02
CPSF1-204ENST00000529288 RAD50Q92878 1312 aa15.17■□□□□ 0.02
CPSF1-204ENST00000529288 RBM47A0AV96 593 aaKnown RBP15.17■□□□□ 0.02
CPSF1-204ENST00000529288 NT5C2P49902 561 aa15.17■□□□□ 0.02
CPSF1-204ENST00000529288 PURAQ00577 322 aaKnown RBP15.17■□□□□ 0.02
CPSF1-204ENST00000529288 TRDNQ13061 729 aa15.17■□□□□ 0.02
CPSF1-204ENST00000529288 TTLL4Q14679 1199 aa15.17■□□□□ 0.02
CPSF1-204ENST00000529288 TTC22Q5TAA0 569 aa15.17■□□□□ 0.02
CPSF1-204ENST00000529288 CHST3Q7LGC8 479 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms