RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 CCDC181Q5TID7 509 aa10.05□□□□□ -0.8
NUP54-215ENST00000514313 EEF1DP3Q658K8 133 aa10.05□□□□□ -0.8
NUP54-215ENST00000514313 DDX53Q86TM3 631 aaKnown RBP10.05□□□□□ -0.8
NUP54-215ENST00000514313 FMNL3Q8IVF7 1028 aa10.05□□□□□ -0.8
NUP54-215ENST00000514313 USHBP1Q8N6Y0 703 aa10.05□□□□□ -0.8
NUP54-215ENST00000514313 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.05□□□□□ -0.8
NUP54-215ENST00000514313 DIO2Q92813 273 aa10.05□□□□□ -0.8
NUP54-215ENST00000514313 USP7Q93009 1102 aa10.05□□□□□ -0.8
NUP54-215ENST00000514313 TP53INP1Q96A56 240 aa10.05□□□□□ -0.8
NUP54-215ENST00000514313 WNK4Q96J92 1243 aa10.05□□□□□ -0.8
NUP54-215ENST00000514313 ASPSCR1Q9BZE9 553 aa10.05□□□□□ -0.8
NUP54-215ENST00000514313 ZNF891A8MT65 544 aaPredicted RBP10.04□□□□□ -0.8
NUP54-215ENST00000514313 C1QTNF9BB2RNN3 333 aa10.04□□□□□ -0.8
NUP54-215ENST00000514313 H3BS24 57 aa10.04□□□□□ -0.8
NUP54-215ENST00000514313 BRINP1O60477 761 aa10.04□□□□□ -0.8
NUP54-215ENST00000514313 BPIP17213 487 aa10.04□□□□□ -0.8
NUP54-215ENST00000514313 ID4P47928 161 aa10.04□□□□□ -0.8
NUP54-215ENST00000514313 MTMR1Q13613 665 aa10.04□□□□□ -0.8
NUP54-215ENST00000514313 RNF219Q5W0B1 726 aaPredicted RBP10.04□□□□□ -0.8
NUP54-215ENST00000514313 LBX2Q6XYB7 198 aa10.04□□□□□ -0.8
NUP54-215ENST00000514313 ARHGAP27Q6ZUM4 889 aa10.04□□□□□ -0.8
NUP54-215ENST00000514313 ANKLE2Q86XL3 938 aa10.04□□□□□ -0.8
NUP54-215ENST00000514313 SPACA3Q8IXA5 215 aa10.04□□□□□ -0.8
NUP54-215ENST00000514313 OR2W6PQ8NHA6 318 aa10.04□□□□□ -0.8
NUP54-215ENST00000514313 PI4K2BQ8TCG2 481 aa10.04□□□□□ -0.8
NUP54-215ENST00000514313 TTC1Q99614 292 aa10.04□□□□□ -0.8
NUP54-215ENST00000514313 ORAI3Q9BRQ5 295 aa10.04□□□□□ -0.8
NUP54-215ENST00000514313 FOXP3Q9BZS1 431 aa10.04□□□□□ -0.8
NUP54-215ENST00000514313 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.04□□□□□ -0.8
NUP54-215ENST00000514313 AP5S1Q9NUS5 200 aa10.04□□□□□ -0.8
NUP54-215ENST00000514313 SLC5A4Q9NY91 659 aa10.04□□□□□ -0.8
NUP54-215ENST00000514313 TCFL5Q9UL49 500 aa10.04□□□□□ -0.8
NUP54-215ENST00000514313 EID1Q9Y6B2 187 aa10.04□□□□□ -0.8
NUP54-215ENST00000514313 NEMP1O14524 444 aa10.03□□□□□ -0.8
NUP54-215ENST00000514313 TPP2P29144 1249 aaPredicted RBP10.03□□□□□ -0.8
NUP54-215ENST00000514313 TMPRSS15P98073 1019 aa10.03□□□□□ -0.8
NUP54-215ENST00000514313 TTF1Q15361 905 aaPredicted RBP10.03□□□□□ -0.8
NUP54-215ENST00000514313 MBLAC2Q68D91 279 aa10.03□□□□□ -0.8
NUP54-215ENST00000514313 PRR23CQ6ZRP0 262 aa10.03□□□□□ -0.8
NUP54-215ENST00000514313 SPATS2Q86XZ4 545 aaKnown RBP10.03□□□□□ -0.8
NUP54-215ENST00000514313 ZC3H7AQ8IWR0 971 aaKnown RBP10.03□□□□□ -0.8
NUP54-215ENST00000514313 IGSF22Q8N9C0 903 aa10.03□□□□□ -0.8
NUP54-215ENST00000514313 LINC00116Q8NCU8 138 aa10.03□□□□□ -0.8
NUP54-215ENST00000514313 RCBTB1Q8NDN9 531 aa10.03□□□□□ -0.8
NUP54-215ENST00000514313 IFT22Q9H7X7 185 aa10.03□□□□□ -0.8
NUP54-215ENST00000514313 COQ6Q9Y2Z9 468 aa10.03□□□□□ -0.8
NUP54-215ENST00000514313 M0R2C6 588 aa10.02□□□□□ -0.81
NUP54-215ENST00000514313 CBX4O00257 560 aa10.02□□□□□ -0.81
NUP54-215ENST00000514313 FKTNO75072 461 aa10.02□□□□□ -0.81
NUP54-215ENST00000514313 CEACAM5P06731 702 aa10.02□□□□□ -0.81
NUP54-215ENST00000514313 CKMP06732 381 aa10.02□□□□□ -0.81
NUP54-215ENST00000514313 PAMP19021 973 aa10.02□□□□□ -0.81
NUP54-215ENST00000514313 PCBP3P57721 371 aaKnown RBP10.02□□□□□ -0.81
NUP54-215ENST00000514313 INSM1Q01101 510 aaPredicted RBP10.02□□□□□ -0.81
NUP54-215ENST00000514313 INF2Q27J81 1249 aa10.02□□□□□ -0.81
NUP54-215ENST00000514313 DUSP27Q5VZP5 1158 aa10.02□□□□□ -0.81
NUP54-215ENST00000514313 RNF43Q68DV7 783 aa10.02□□□□□ -0.81
NUP54-215ENST00000514313 NXPE1Q8N323 547 aa10.02□□□□□ -0.81
NUP54-215ENST00000514313 MTMR8Q96EF0 704 aa10.02□□□□□ -0.81
NUP54-215ENST00000514313 HSPA12BQ96MM6 686 aa10.02□□□□□ -0.81
NUP54-215ENST00000514313 FGF10O15520 208 aaPredicted RBP10.01□□□□□ -0.81
NUP54-215ENST00000514313 SRGAP2CP0DJJ0 459 aa10.01□□□□□ -0.81
NUP54-215ENST00000514313 GAB4Q2WGN9 574 aa10.01□□□□□ -0.81
NUP54-215ENST00000514313 PCDH19Q8TAB3 1148 aa10.01□□□□□ -0.81
NUP54-215ENST00000514313 MMP19Q99542 508 aa10.01□□□□□ -0.81
NUP54-215ENST00000514313 SMAD5Q99717 465 aaKnown RBP10.01□□□□□ -0.81
NUP54-215ENST00000514313 ALG1Q9BT22 464 aa10.01□□□□□ -0.81
NUP54-215ENST00000514313 CRTAC1Q9NQ79 661 aa10.01□□□□□ -0.81
NUP54-215ENST00000514313 ZSWIM5Q9P217 1185 aa10.01□□□□□ -0.81
NUP54-215ENST00000514313 APOBEC2Q9Y235 224 aaKnown RBP10.01□□□□□ -0.81
NUP54-215ENST00000514313 FAN1Q9Y2M0 1017 aa10.01□□□□□ -0.81
NUP54-215ENST00000514313 NPHP3-ACAD11A0A0J9YXS1 232 aa10□□□□□ -0.81
NUP54-215ENST00000514313 SSU72P8A0A1W2PR75 194 aa10□□□□□ -0.81
NUP54-215ENST00000514313 SCNN1BP51168 640 aa10□□□□□ -0.81
NUP54-215ENST00000514313 DSG1Q02413 1049 aa10□□□□□ -0.81
NUP54-215ENST00000514313 PAK1Q13153 545 aa10□□□□□ -0.81
NUP54-215ENST00000514313 KIZQ2M2Z5 673 aa10□□□□□ -0.81
NUP54-215ENST00000514313 IQCEQ6IPM2 695 aa10□□□□□ -0.81
NUP54-215ENST00000514313 KIF18BQ86Y91 864 aa10□□□□□ -0.81
NUP54-215ENST00000514313 COG1Q8WTW3 980 aa10□□□□□ -0.81
NUP54-215ENST00000514313 PTCHD1Q96NR3 888 aa10□□□□□ -0.81
NUP54-215ENST00000514313 CDADC1Q9BWV3 514 aa10□□□□□ -0.81
NUP54-215ENST00000514313 TRIM8Q9BZR9 551 aa10□□□□□ -0.81
NUP54-215ENST00000514313 DUSP13Q9UII6 198 aa10□□□□□ -0.81
NUP54-215ENST00000514313 PLAGL2Q9UPG8 496 aa10□□□□□ -0.81
NUP54-215ENST00000514313 WDR64B1ANS9 1081 aa9.99□□□□□ -0.81
NUP54-215ENST00000514313 F2P00734 622 aa9.99□□□□□ -0.81
NUP54-215ENST00000514313 ADCYAP1R1P41586 468 aa9.99□□□□□ -0.81
NUP54-215ENST00000514313 CLCN7P51798 805 aa9.99□□□□□ -0.81
NUP54-215ENST00000514313 EPHB1P54762 984 aa9.99□□□□□ -0.81
NUP54-215ENST00000514313 ITKQ08881 620 aa9.99□□□□□ -0.81
NUP54-215ENST00000514313 RNF111Q6ZNA4 994 aa9.99□□□□□ -0.81
NUP54-215ENST00000514313 THAP5Q7Z6K1 395 aa9.99□□□□□ -0.81
NUP54-215ENST00000514313 UBE2FQ969M7 185 aa9.99□□□□□ -0.81
NUP54-215ENST00000514313 DCAF5Q96JK2 942 aa9.99□□□□□ -0.81
NUP54-215ENST00000514313 CELF4Q9BZC1 486 aaKnown RBP9.99□□□□□ -0.81
NUP54-215ENST00000514313 MKNK2Q9HBH9 465 aa9.99□□□□□ -0.81
NUP54-215ENST00000514313 PPARGC1AQ9UBK2 798 aaKnown RBP9.99□□□□□ -0.81
NUP54-215ENST00000514313 TCEAL9Q9UHQ7 104 aa9.99□□□□□ -0.81
NUP54-215ENST00000514313 FBXL7Q9UJT9 491 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms