RNA–Protein interactions for RNA: ENST00000505307.5

UBE2D3-220, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 5

Gene UBE2D3, Length 743 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-220ENST00000505307 KAT14Q9H8E8 782 aa23.4■■□□□ 1.34
UBE2D3-220ENST00000505307 CNNM2Q9H8M5 875 aa23.4■■□□□ 1.34
UBE2D3-220ENST00000505307 PDGFCQ9NRA1 345 aa23.4■■□□□ 1.34
UBE2D3-220ENST00000505307 TMEM265A0A087WTH1 108 aa23.39■■□□□ 1.33
UBE2D3-220ENST00000505307 CXCL17Q6UXB2 119 aa23.39■■□□□ 1.33
UBE2D3-220ENST00000505307 TMEM199Q8N511 208 aa23.39■■□□□ 1.33
UBE2D3-220ENST00000505307 PNMA1Q8ND90 353 aa23.39■■□□□ 1.33
UBE2D3-220ENST00000505307 DNERQ8NFT8 737 aa23.39■■□□□ 1.33
UBE2D3-220ENST00000505307 GUCD1Q96NT3 240 aa23.39■■□□□ 1.33
UBE2D3-220ENST00000505307 ZSCAN10Q96SZ4 725 aaPredicted RBP23.39■■□□□ 1.33
UBE2D3-220ENST00000505307 ZKSCAN3Q9BRR0 538 aa23.39■■□□□ 1.33
UBE2D3-220ENST00000505307 CD4P01730 458 aa23.38■■□□□ 1.33
UBE2D3-220ENST00000505307 ITGA7Q13683 1181 aa23.38■■□□□ 1.33
UBE2D3-220ENST00000505307 PURBQ96QR8 312 aaKnown RBP23.38■■□□□ 1.33
UBE2D3-220ENST00000505307 LAMA2P24043 3122 aaKnown RBP23.37■■□□□ 1.33
UBE2D3-220ENST00000505307 RBM47A0AV96 593 aaKnown RBP23.37■■□□□ 1.33
UBE2D3-220ENST00000505307 B4E1Z4 1266 aa23.37■■□□□ 1.33
UBE2D3-220ENST00000505307 CALML3P27482 149 aa23.37■■□□□ 1.33
UBE2D3-220ENST00000505307 RPS6P62753 249 aaKnown RBP23.37■■□□□ 1.33
UBE2D3-220ENST00000505307 ASPRV1Q53RT3 343 aa23.37■■□□□ 1.33
UBE2D3-220ENST00000505307 WDR11Q9BZH6 1224 aa23.37■■□□□ 1.33
UBE2D3-220ENST00000505307 SEMA6BQ9H3T3 888 aa23.37■■□□□ 1.33
UBE2D3-220ENST00000505307 ZSWIM5Q9P217 1185 aa23.37■■□□□ 1.33
UBE2D3-220ENST00000505307 DDX49Q9Y6V7 483 aaKnown RBP23.37■■□□□ 1.33
UBE2D3-220ENST00000505307 LRRC37A2A6NM11 1700 aa23.36■■□□□ 1.33
UBE2D3-220ENST00000505307 HSFX4A0A1B0GTS1 333 aaPredicted RBP23.36■■□□□ 1.33
UBE2D3-220ENST00000505307 HSFX3A0A1B0GWH4 333 aaPredicted RBP23.36■■□□□ 1.33
UBE2D3-220ENST00000505307 DLL1O00548 723 aa23.36■■□□□ 1.33
UBE2D3-220ENST00000505307 NKRFO15226 690 aaKnown RBP eCLIP23.36■■□□□ 1.33
UBE2D3-220ENST00000505307 PDE4DQ08499 809 aa23.36■■□□□ 1.33
UBE2D3-220ENST00000505307 SLC30A10Q6XR72 485 aa23.36■■□□□ 1.33
UBE2D3-220ENST00000505307 POLR3EQ9NVU0 708 aa23.36■■□□□ 1.33
UBE2D3-220ENST00000505307 LAMA4Q16363 1823 aa23.36■■□□□ 1.33
UBE2D3-220ENST00000505307 GOLGA8HP0CJ92 632 aa23.35■■□□□ 1.33
UBE2D3-220ENST00000505307 EDNRBP24530 442 aa23.35■■□□□ 1.33
UBE2D3-220ENST00000505307 CPT1AP50416 773 aa23.35■■□□□ 1.33
UBE2D3-220ENST00000505307 BRDTQ58F21 947 aaPredicted RBP23.35■■□□□ 1.33
UBE2D3-220ENST00000505307 ENAHQ8N8S7 591 aaPredicted RBP23.35■■□□□ 1.33
UBE2D3-220ENST00000505307 UBAC1Q9BSL1 405 aa23.35■■□□□ 1.33
UBE2D3-220ENST00000505307 SUPT16HQ9Y5B9 1047 aaKnown RBP23.35■■□□□ 1.33
UBE2D3-220ENST00000505307 LCTP09848 1927 aa23.35■■□□□ 1.33
UBE2D3-220ENST00000505307 RAD50Q92878 1312 aa23.34■■□□□ 1.33
UBE2D3-220ENST00000505307 PSRC1Q6PGN9 363 aaPredicted RBP23.34■■□□□ 1.33
UBE2D3-220ENST00000505307 SCFD2Q8WU76 684 aa23.34■■□□□ 1.33
UBE2D3-220ENST00000505307 UBA5Q9GZZ9 404 aa23.34■■□□□ 1.33
UBE2D3-220ENST00000505307 TNKSO95271 1327 aa23.33■■□□□ 1.33
UBE2D3-220ENST00000505307 ABCB11O95342 1321 aa23.33■■□□□ 1.33
UBE2D3-220ENST00000505307 PARP1P09874 1014 aaKnown RBP23.33■■□□□ 1.33
UBE2D3-220ENST00000505307 CDC37Q16543 378 aaPredicted RBP23.33■■□□□ 1.33
UBE2D3-220ENST00000505307 USH1GQ495M9 461 aa23.33■■□□□ 1.33
UBE2D3-220ENST00000505307 TTC22Q5TAA0 569 aa23.33■■□□□ 1.33
UBE2D3-220ENST00000505307 MCF2L2Q86YR7 1114 aa23.33■■□□□ 1.33
UBE2D3-220ENST00000505307 RUFY2Q8WXA3 655 aa23.33■■□□□ 1.33
UBE2D3-220ENST00000505307 CDX2Q99626 313 aaPredicted RBP23.33■■□□□ 1.33
UBE2D3-220ENST00000505307 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.33■■□□□ 1.335e-7■■■■□ 24.9
UBE2D3-220ENST00000505307 PPP1R12CQ9BZL4 782 aa23.33■■□□□ 1.33
UBE2D3-220ENST00000505307 GRIN2DO15399 1336 aa23.33■■□□□ 1.32
UBE2D3-220ENST00000505307 KPNA6O60684 536 aa23.32■■□□□ 1.32
UBE2D3-220ENST00000505307 CSF2RAP15509 400 aa23.32■■□□□ 1.32
UBE2D3-220ENST00000505307 PPP2R5BQ15173 497 aa23.32■■□□□ 1.32
UBE2D3-220ENST00000505307 TMEM240Q5SV17 173 aa23.32■■□□□ 1.32
UBE2D3-220ENST00000505307 TMEM63BQ5T3F8 832 aa23.32■■□□□ 1.32
UBE2D3-220ENST00000505307 ADGRF4Q8IZF3 695 aa23.32■■□□□ 1.32
UBE2D3-220ENST00000505307 HIPK3Q9H422 1215 aa23.32■■□□□ 1.32
UBE2D3-220ENST00000505307 GPHNQ9NQX3 736 aaPredicted RBP23.32■■□□□ 1.32
UBE2D3-220ENST00000505307 SUPT20HL2P0C7V6 817 aa23.31■■□□□ 1.32
UBE2D3-220ENST00000505307 IFIT1BQ5T764 474 aaKnown RBP23.31■■□□□ 1.32
UBE2D3-220ENST00000505307 C16orf59Q7L2K0 433 aa23.31■■□□□ 1.32
UBE2D3-220ENST00000505307 OR6J1Q8NGC5 347 aa23.31■■□□□ 1.32
UBE2D3-220ENST00000505307 MTIF3Q9H2K0 278 aaKnown RBP23.31■■□□□ 1.32
UBE2D3-220ENST00000505307 TTYH1Q9H313 450 aaPredicted RBP23.31■■□□□ 1.32
UBE2D3-220ENST00000505307 IL23AQ9NPF7 189 aa23.31■■□□□ 1.32
UBE2D3-220ENST00000505307 MRPL11Q9Y3B7 192 aaKnown RBP23.31■■□□□ 1.32
UBE2D3-220ENST00000505307 PTGS1P23219 599 aa23.3■■□□□ 1.32
UBE2D3-220ENST00000505307 PDE4AP27815 886 aa23.3■■□□□ 1.32
UBE2D3-220ENST00000505307 CYP2C18P33260 490 aa23.3■■□□□ 1.32
UBE2D3-220ENST00000505307 PURAQ00577 322 aaKnown RBP23.3■■□□□ 1.32
UBE2D3-220ENST00000505307 TRDNQ13061 729 aa23.3■■□□□ 1.32
UBE2D3-220ENST00000505307 TTLL4Q14679 1199 aa23.3■■□□□ 1.32
UBE2D3-220ENST00000505307 RASIP1Q5U651 963 aa23.3■■□□□ 1.32
UBE2D3-220ENST00000505307 MTG1Q9BT17 334 aaPredicted RBP23.3■■□□□ 1.32
UBE2D3-220ENST00000505307 CPVLQ9H3G5 476 aa23.3■■□□□ 1.32
UBE2D3-220ENST00000505307 A0A0C4DFX4 3053 aa23.29■■□□□ 1.32
UBE2D3-220ENST00000505307 DHX16O60231 1041 aaKnown RBP23.29■■□□□ 1.32
UBE2D3-220ENST00000505307 GSPT1P15170 499 aaKnown RBP23.29■■□□□ 1.32
UBE2D3-220ENST00000505307 PSMC6P62333 389 aa23.29■■□□□ 1.32
UBE2D3-220ENST00000505307 FBXO11Q86XK2 927 aa23.29■■□□□ 1.32
UBE2D3-220ENST00000505307 NSUN6Q8TEA1 469 aaKnown RBP23.29■■□□□ 1.32
UBE2D3-220ENST00000505307 IWS1Q96ST2 819 aa23.29■■□□□ 1.32
UBE2D3-220ENST00000505307 TRPV6Q9H1D0 765 aa23.29■■□□□ 1.32
UBE2D3-220ENST00000505307 ALDH8A1Q9H2A2 487 aaPredicted RBP23.29■■□□□ 1.32
UBE2D3-220ENST00000505307 U3KPZ7 1027 aaPredicted RBP23.29■■□□□ 1.32
UBE2D3-220ENST00000505307 A6NJR5 290 aa23.28■■□□□ 1.32
UBE2D3-220ENST00000505307 B4GALT4O60513 344 aa23.28■■□□□ 1.32
UBE2D3-220ENST00000505307 TXNP10599 105 aaKnown RBP23.28■■□□□ 1.32
UBE2D3-220ENST00000505307 DNAJB2P25686 324 aa23.28■■□□□ 1.32
UBE2D3-220ENST00000505307 QRICH1Q2TAL8 776 aa23.28■■□□□ 1.32
UBE2D3-220ENST00000505307 ZNF365Q70YC5 407 aa23.28■■□□□ 1.32
UBE2D3-220ENST00000505307 SYTL5Q8TDW5 730 aaPredicted RBP23.28■■□□□ 1.32
UBE2D3-220ENST00000505307 NOC4LQ9BVI4 516 aaKnown RBP23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms