RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 RPS6P62753 249 aaKnown RBP18.41■□□□□ 0.54
UPF3A-208ENST00000484246 TOB2Q14106 344 aaPredicted RBP18.41■□□□□ 0.54
UPF3A-208ENST00000484246 LHX8Q68G74 356 aa18.41■□□□□ 0.54
UPF3A-208ENST00000484246 SLC30A10Q6XR72 485 aa18.41■□□□□ 0.54
UPF3A-208ENST00000484246 UBE2Q1Q7Z7E8 422 aa18.41■□□□□ 0.54
UPF3A-208ENST00000484246 HOMER1Q86YM7 354 aa18.41■□□□□ 0.54
UPF3A-208ENST00000484246 ANKLE1Q8NAG6 615 aa18.41■□□□□ 0.54
UPF3A-208ENST00000484246 RRP36Q96EU6 259 aaKnown RBP18.41■□□□□ 0.54
UPF3A-208ENST00000484246 UPF3BQ9BZI7 483 aaKnown RBP18.41■□□□□ 0.54
UPF3A-208ENST00000484246 ALDH8A1Q9H2A2 487 aaPredicted RBP18.41■□□□□ 0.54
UPF3A-208ENST00000484246 MAP3K20Q9NYL2 800 aaKnown RBP18.41■□□□□ 0.54
UPF3A-208ENST00000484246 ADD3Q9UEY8 706 aaKnown RBP18.41■□□□□ 0.54
UPF3A-208ENST00000484246 DDX20Q9UHI6 824 aaKnown RBP18.41■□□□□ 0.54
UPF3A-208ENST00000484246 OGDHLQ9ULD0 1010 aa18.41■□□□□ 0.54
UPF3A-208ENST00000484246 PCDHA1Q9Y5I3 950 aa18.41■□□□□ 0.54
UPF3A-208ENST00000484246 CNTNAP5Q8WYK1 1306 aa18.41■□□□□ 0.54
UPF3A-208ENST00000484246 CENPFP49454 3210 aa18.4■□□□□ 0.54
UPF3A-208ENST00000484246 CCDC196A0A1B0GTZ2 297 aa18.4■□□□□ 0.54
UPF3A-208ENST00000484246 ZNF865P0CJ78 1059 aaPredicted RBP18.4■□□□□ 0.54
UPF3A-208ENST00000484246 HSD17B4P51659 736 aa18.4■□□□□ 0.54
UPF3A-208ENST00000484246 APOBRQ0VD83 1088 aa18.4■□□□□ 0.54
UPF3A-208ENST00000484246 ARMCX2Q7L311 632 aa18.4■□□□□ 0.54
UPF3A-208ENST00000484246 CCDC144CPQ8IYA2 1237 aa18.4■□□□□ 0.54
UPF3A-208ENST00000484246 DNERQ8NFT8 737 aa18.4■□□□□ 0.54
UPF3A-208ENST00000484246 KATNBL1Q9H079 304 aa18.4■□□□□ 0.54
UPF3A-208ENST00000484246 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.4■□□□□ 0.54
UPF3A-208ENST00000484246 CNPY2Q9Y2B0 182 aa18.4■□□□□ 0.54
UPF3A-208ENST00000484246 PTPDC1A2A3K4 754 aa18.39■□□□□ 0.53
UPF3A-208ENST00000484246 EDNRBP24530 442 aa18.39■□□□□ 0.53
UPF3A-208ENST00000484246 METAP2P50579 478 aaKnown RBP eCLIP18.39■□□□□ 0.53
UPF3A-208ENST00000484246 ALDH5A1P51649 535 aaPredicted RBP18.39■□□□□ 0.53
UPF3A-208ENST00000484246 RAB11FIP4Q86YS3 637 aa18.39■□□□□ 0.53
UPF3A-208ENST00000484246 TEX2Q8IWB9 1127 aa18.39■□□□□ 0.53
UPF3A-208ENST00000484246 SYTL5Q8TDW5 730 aaPredicted RBP18.39■□□□□ 0.53
UPF3A-208ENST00000484246 ABHD16BQ9H3Z7 469 aa18.39■□□□□ 0.53
UPF3A-208ENST00000484246 SEC63Q9UGP8 760 aaKnown RBP18.39■□□□□ 0.53
UPF3A-208ENST00000484246 GTF3C3Q9Y5Q9 886 aa18.39■□□□□ 0.53
UPF3A-208ENST00000484246 CDC27P30260 824 aa18.38■□□□□ 0.53
UPF3A-208ENST00000484246 ZNF274Q96GC6 653 aaPredicted RBP18.38■□□□□ 0.53
UPF3A-208ENST00000484246 PDRG1Q9NUG6 133 aa18.38■□□□□ 0.53
UPF3A-208ENST00000484246 AKR1A1P14550 325 aa18.37■□□□□ 0.53
UPF3A-208ENST00000484246 CALML3P27482 149 aa18.37■□□□□ 0.53
UPF3A-208ENST00000484246 PDIA3P30101 505 aaKnown RBP18.37■□□□□ 0.53
UPF3A-208ENST00000484246 ACVR2BQ13705 512 aa18.37■□□□□ 0.53
UPF3A-208ENST00000484246 CMTR1Q8N1G2 835 aaKnown RBP18.37■□□□□ 0.53
UPF3A-208ENST00000484246 PCDH10Q9P2E7 1040 aa18.37■□□□□ 0.53
UPF3A-208ENST00000484246 hCG_1984214I3L0E3 225 aa18.36■□□□□ 0.53
UPF3A-208ENST00000484246 MNX1P50219 401 aaPredicted RBP18.36■□□□□ 0.53
UPF3A-208ENST00000484246 BRCA2P51587 3418 aa18.36■□□□□ 0.53
UPF3A-208ENST00000484246 KIAA0100Q14667 2235 aaKnown RBP18.36■□□□□ 0.53
UPF3A-208ENST00000484246 PRAMEF19Q5SWL8 479 aa18.36■□□□□ 0.53
UPF3A-208ENST00000484246 ZNF713Q8N859 430 aaPredicted RBP18.36■□□□□ 0.53
UPF3A-208ENST00000484246 PURBQ96QR8 312 aaKnown RBP18.36■□□□□ 0.53
UPF3A-208ENST00000484246 MPHOSPH6Q99547 160 aaKnown RBP18.36■□□□□ 0.53
UPF3A-208ENST00000484246 VTA1Q9NP79 307 aa18.36■□□□□ 0.53
UPF3A-208ENST00000484246 COL20A1Q9P218 1284 aa18.36■□□□□ 0.53
UPF3A-208ENST00000484246 RBM27Q9P2N5 1060 aaKnown RBP18.36■□□□□ 0.53
UPF3A-208ENST00000484246 FRMPD4Q14CM0 1322 aa18.35■□□□□ 0.53
UPF3A-208ENST00000484246 B4DLN1 442 aa18.35■□□□□ 0.53
UPF3A-208ENST00000484246 PIK3CDO00329 1044 aa18.35■□□□□ 0.53
UPF3A-208ENST00000484246 FARP2O94887 1054 aaPredicted RBP18.35■□□□□ 0.53
UPF3A-208ENST00000484246 TFRCP02786 760 aaKnown RBP18.35■□□□□ 0.53
UPF3A-208ENST00000484246 ADD1P35611 737 aaKnown RBP18.35■□□□□ 0.53
UPF3A-208ENST00000484246 RBM25P49756 843 aaKnown RBP18.35■□□□□ 0.53
UPF3A-208ENST00000484246 MRPL12P52815 198 aaKnown RBP18.35■□□□□ 0.53
UPF3A-208ENST00000484246 ANKRD1Q15327 319 aa18.35■□□□□ 0.53
UPF3A-208ENST00000484246 NTRK3Q16288 839 aa18.35■□□□□ 0.53
UPF3A-208ENST00000484246 PPP1R18Q6NYC8 613 aa18.35■□□□□ 0.53
UPF3A-208ENST00000484246 TBC1D5Q92609 795 aa18.35■□□□□ 0.53
UPF3A-208ENST00000484246 LCTP09848 1927 aa18.35■□□□□ 0.53
UPF3A-208ENST00000484246 PLXNA1Q9UIW2 1896 aa18.35■□□□□ 0.53
UPF3A-208ENST00000484246 LRRC37A2A6NM11 1700 aa18.35■□□□□ 0.53
UPF3A-208ENST00000484246 GCOM1H8Y6P7 765 aaPredicted RBP18.34■□□□□ 0.53
UPF3A-208ENST00000484246 POLR2MP0CAP2 368 aa18.34■□□□□ 0.53
UPF3A-208ENST00000484246 IFNAR1P17181 557 aa18.34■□□□□ 0.53
UPF3A-208ENST00000484246 CNGA1P29973 690 aa18.34■□□□□ 0.53
UPF3A-208ENST00000484246 NKX3-2P78367 333 aa18.34■□□□□ 0.53
UPF3A-208ENST00000484246 NSUN6Q8TEA1 469 aaKnown RBP18.34■□□□□ 0.53
UPF3A-208ENST00000484246 IWS1Q96ST2 819 aa18.34■□□□□ 0.53
UPF3A-208ENST00000484246 ZHX1Q9UKY1 873 aaPredicted RBP18.34■□□□□ 0.53
UPF3A-208ENST00000484246 FAM184BQ9ULE4 1060 aa18.34■□□□□ 0.53
UPF3A-208ENST00000484246 RBM47A0AV96 593 aaKnown RBP18.33■□□□□ 0.52
UPF3A-208ENST00000484246 CFBP00751 764 aa18.33■□□□□ 0.52
UPF3A-208ENST00000484246 RARBP10826 455 aa18.33■□□□□ 0.52
UPF3A-208ENST00000484246 PIBF1Q8WXW3 757 aa18.33■□□□□ 0.52
UPF3A-208ENST00000484246 RNF26Q9BY78 433 aaPredicted RBP18.33■□□□□ 0.52
UPF3A-208ENST00000484246 NAP1L2Q9ULW6 460 aaPredicted RBP18.33■□□□□ 0.52
UPF3A-208ENST00000484246 ZNFX1Q9P2E3 1918 aaKnown RBP18.32■□□□□ 0.52
UPF3A-208ENST00000484246 DNM1LO00429 736 aa18.32■□□□□ 0.52
UPF3A-208ENST00000484246 DUSP11O75319 330 aaKnown RBP18.32■□□□□ 0.52
UPF3A-208ENST00000484246 COL6A1P12109 1028 aa18.32■□□□□ 0.52
UPF3A-208ENST00000484246 PFKFB3Q16875 520 aaPredicted RBP18.32■□□□□ 0.52
UPF3A-208ENST00000484246 CCDC144BQ3MJ40 725 aa18.32■□□□□ 0.52
UPF3A-208ENST00000484246 WWC2Q6AWC2 1192 aa18.32■□□□□ 0.52
UPF3A-208ENST00000484246 TAPT1Q6NXT6 567 aa18.32■□□□□ 0.52
UPF3A-208ENST00000484246 CCDC82Q8N4S0 544 aa18.32■□□□□ 0.52
UPF3A-208ENST00000484246 IL27Q8NEV9 243 aa18.32■□□□□ 0.52
UPF3A-208ENST00000484246 TAAR1Q96RJ0 339 aa18.32■□□□□ 0.52
UPF3A-208ENST00000484246 RMDN3Q96TC7 470 aa18.32■□□□□ 0.52
UPF3A-208ENST00000484246 KIF2CQ99661 725 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms