RNA–Protein interactions for RNA: ENST00000479941.1

ATG4B-219, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 2

Gene ATG4B, Length 374 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-219ENST00000479941 HMX1Q9NP08 348 aaPredicted RBP12.51□□□□□ -0.41
ATG4B-219ENST00000479941 ADD3Q9UEY8 706 aaKnown RBP12.51□□□□□ -0.41
ATG4B-219ENST00000479941 NRBP1Q9UHY1 535 aa12.51□□□□□ -0.41
ATG4B-219ENST00000479941 TPCN1Q9ULQ1 816 aa12.51□□□□□ -0.41
ATG4B-219ENST00000479941 V9GY48 417 aaPredicted RBP12.51□□□□□ -0.41
ATG4B-219ENST00000479941 SYNGAP1Q96PV0 1343 aa12.51□□□□□ -0.41
ATG4B-219ENST00000479941 KIAA0100Q14667 2235 aaKnown RBP12.51□□□□□ -0.41
ATG4B-219ENST00000479941 SOWAHBA6NEL2 793 aa12.5□□□□□ -0.41
ATG4B-219ENST00000479941 CPLX1O14810 134 aa12.5□□□□□ -0.41
ATG4B-219ENST00000479941 CFBP00751 764 aa12.5□□□□□ -0.41
ATG4B-219ENST00000479941 MYCP01106 439 aaPredicted RBP12.5□□□□□ -0.41
ATG4B-219ENST00000479941 AKAP17AQ02040 695 aaKnown RBP12.5□□□□□ -0.41
ATG4B-219ENST00000479941 STK3Q13188 491 aa12.5□□□□□ -0.41
ATG4B-219ENST00000479941 RABEP1Q15276 862 aa12.5□□□□□ -0.41
ATG4B-219ENST00000479941 NTRK3Q16288 839 aa12.5□□□□□ -0.41
ATG4B-219ENST00000479941 SLC30A10Q6XR72 485 aa12.5□□□□□ -0.41
ATG4B-219ENST00000479941 DNERQ8NFT8 737 aa12.5□□□□□ -0.41
ATG4B-219ENST00000479941 FGD4Q96M96 766 aa12.5□□□□□ -0.41
ATG4B-219ENST00000479941 MPHOSPH6Q99547 160 aaKnown RBP12.5□□□□□ -0.41
ATG4B-219ENST00000479941 LARP6Q9BRS8 491 aaKnown RBP12.5□□□□□ -0.41
ATG4B-219ENST00000479941 RNF26Q9BY78 433 aaPredicted RBP12.5□□□□□ -0.41
ATG4B-219ENST00000479941 UNC93B1Q9H1C4 597 aa12.5□□□□□ -0.41
ATG4B-219ENST00000479941 SLKQ9H2G2 1235 aaPredicted RBP12.5□□□□□ -0.41
ATG4B-219ENST00000479941 CNPY2Q9Y2B0 182 aa12.5□□□□□ -0.41
ATG4B-219ENST00000479941 PLXNA1Q9UIW2 1896 aa12.49□□□□□ -0.41
ATG4B-219ENST00000479941 hCG_1642624A0A1W2PR95 340 aa12.49□□□□□ -0.41
ATG4B-219ENST00000479941 B4DLN1 442 aa12.49□□□□□ -0.41
ATG4B-219ENST00000479941 GCOM1H8Y6P7 765 aaPredicted RBP12.49□□□□□ -0.41
ATG4B-219ENST00000479941 OPLAHO14841 1288 aa12.49□□□□□ -0.41
ATG4B-219ENST00000479941 PRPF3O43395 683 aaKnown RBP12.49□□□□□ -0.41
ATG4B-219ENST00000479941 PFKFB2O60825 505 aa12.49□□□□□ -0.41
ATG4B-219ENST00000479941 GJB1P08034 283 aa12.49□□□□□ -0.41
ATG4B-219ENST00000479941 POLR2MP0CAP2 368 aa12.49□□□□□ -0.41
ATG4B-219ENST00000479941 CYBAP13498 195 aa12.49□□□□□ -0.41
ATG4B-219ENST00000479941 CAPN2P17655 700 aa12.49□□□□□ -0.41
ATG4B-219ENST00000479941 HSD17B4P51659 736 aa12.49□□□□□ -0.41
ATG4B-219ENST00000479941 MRPL12P52815 198 aaKnown RBP12.49□□□□□ -0.41
ATG4B-219ENST00000479941 ARMCX2Q7L311 632 aa12.49□□□□□ -0.41
ATG4B-219ENST00000479941 HEATR3Q7Z4Q2 680 aa12.49□□□□□ -0.41
ATG4B-219ENST00000479941 SYTL5Q8TDW5 730 aaPredicted RBP12.49□□□□□ -0.41
ATG4B-219ENST00000479941 TBC1D5Q92609 795 aa12.49□□□□□ -0.41
ATG4B-219ENST00000479941 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.49□□□□□ -0.415e-6■□□□□ 8.4
ATG4B-219ENST00000479941 ABHD16BQ9H3Z7 469 aa12.49□□□□□ -0.41
ATG4B-219ENST00000479941 NCOA5Q9HCD5 579 aaKnown RBP12.49□□□□□ -0.41
ATG4B-219ENST00000479941 PAK6Q9NQU5 681 aaPredicted RBP12.49□□□□□ -0.41
ATG4B-219ENST00000479941 MSCO60682 206 aa12.48□□□□□ -0.41
ATG4B-219ENST00000479941 CDKL5O76039 1030 aa12.48□□□□□ -0.41
ATG4B-219ENST00000479941 SNAI1O95863 264 aaPredicted RBP12.48□□□□□ -0.41
ATG4B-219ENST00000479941 ALDH5A1P51649 535 aaPredicted RBP12.48□□□□□ -0.41
ATG4B-219ENST00000479941 SCRN1Q12765 414 aa12.48□□□□□ -0.41
ATG4B-219ENST00000479941 PFKFB3Q16875 520 aaPredicted RBP12.48□□□□□ -0.41
ATG4B-219ENST00000479941 WWC2Q6AWC2 1192 aa12.48□□□□□ -0.41
ATG4B-219ENST00000479941 PPP1R18Q6NYC8 613 aa12.48□□□□□ -0.41
ATG4B-219ENST00000479941 TEX2Q8IWB9 1127 aa12.48□□□□□ -0.41
ATG4B-219ENST00000479941 TRIM22Q8IYM9 498 aa12.48□□□□□ -0.41
ATG4B-219ENST00000479941 MORC4Q8TE76 937 aa12.48□□□□□ -0.41
ATG4B-219ENST00000479941 NSUN6Q8TEA1 469 aaKnown RBP12.48□□□□□ -0.41
ATG4B-219ENST00000479941 PHKBQ93100 1093 aa12.48□□□□□ -0.41
ATG4B-219ENST00000479941 PURBQ96QR8 312 aaKnown RBP12.48□□□□□ -0.41
ATG4B-219ENST00000479941 SLC26A6Q9BXS9 759 aa12.48□□□□□ -0.41
ATG4B-219ENST00000479941 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.48□□□□□ -0.41
ATG4B-219ENST00000479941 BARHL2Q9NY43 387 aa12.48□□□□□ -0.41
ATG4B-219ENST00000479941 ASTN1O14525 1302 aa12.47□□□□□ -0.41
ATG4B-219ENST00000479941 PIK3CDO00329 1044 aa12.47□□□□□ -0.41
ATG4B-219ENST00000479941 SEPT4O43236 478 aa12.47□□□□□ -0.41
ATG4B-219ENST00000479941 ST18O60284 1047 aa12.47□□□□□ -0.41
ATG4B-219ENST00000479941 SGPL1O95470 568 aa12.47□□□□□ -0.41
ATG4B-219ENST00000479941 SCG2P13521 617 aa12.47□□□□□ -0.41
ATG4B-219ENST00000479941 CNGA1P29973 690 aa12.47□□□□□ -0.41
ATG4B-219ENST00000479941 CCND3P30281 292 aaPredicted RBP12.47□□□□□ -0.41
ATG4B-219ENST00000479941 GJA8P48165 433 aa12.47□□□□□ -0.41
ATG4B-219ENST00000479941 NAPAP54920 295 aa12.47□□□□□ -0.41
ATG4B-219ENST00000479941 SSRP1Q08945 709 aaKnown RBP12.47□□□□□ -0.41
ATG4B-219ENST00000479941 ME3Q16798 604 aa12.47□□□□□ -0.41
ATG4B-219ENST00000479941 NOL8Q76FK4 1167 aaKnown RBP12.47□□□□□ -0.41
ATG4B-219ENST00000479941 TRPV1Q8NER1 839 aa12.47□□□□□ -0.41
ATG4B-219ENST00000479941 U2AF1L4Q8WU68 220 aaKnown RBP12.47□□□□□ -0.41
ATG4B-219ENST00000479941 CCDC12Q8WUD4 166 aaPredicted RBP12.47□□□□□ -0.41
ATG4B-219ENST00000479941 GPKOWQ92917 476 aaPredicted RBP eCLIP12.47□□□□□ -0.41
ATG4B-219ENST00000479941 CUL5Q93034 780 aa12.47□□□□□ -0.41
ATG4B-219ENST00000479941 GTF3C6Q969F1 213 aa12.47□□□□□ -0.41
ATG4B-219ENST00000479941 ZSCAN31Q96LW9 406 aaPredicted RBP12.47□□□□□ -0.41
ATG4B-219ENST00000479941 DEFB118Q96PH6 123 aa12.47□□□□□ -0.41
ATG4B-219ENST00000479941 TAAR1Q96RJ0 339 aa12.47□□□□□ -0.41
ATG4B-219ENST00000479941 RMDN3Q96TC7 470 aa12.47□□□□□ -0.41
ATG4B-219ENST00000479941 GLT8D2Q9H1C3 349 aa12.47□□□□□ -0.41
ATG4B-219ENST00000479941 PSTPIP2Q9H939 334 aa12.47□□□□□ -0.41
ATG4B-219ENST00000479941 COL20A1Q9P218 1284 aa12.47□□□□□ -0.41
ATG4B-219ENST00000479941 LIMCH1Q9UPQ0 1083 aa12.47□□□□□ -0.41
ATG4B-219ENST00000479941 MEIS2O14770 477 aa12.46□□□□□ -0.41
ATG4B-219ENST00000479941 DEXIO95424 95 aa12.46□□□□□ -0.41
ATG4B-219ENST00000479941 ZNF865P0CJ78 1059 aaPredicted RBP12.46□□□□□ -0.41
ATG4B-219ENST00000479941 EDNRBP24530 442 aa12.46□□□□□ -0.41
ATG4B-219ENST00000479941 HOXA13P31271 388 aaPredicted RBP12.46□□□□□ -0.41
ATG4B-219ENST00000479941 ACVR2BQ13705 512 aa12.46□□□□□ -0.41
ATG4B-219ENST00000479941 PKN1Q16512 942 aa12.46□□□□□ -0.41
ATG4B-219ENST00000479941 PRAMEF19Q5SWL8 479 aa12.46□□□□□ -0.41
ATG4B-219ENST00000479941 IFFO2Q5TF58 517 aa12.46□□□□□ -0.41
ATG4B-219ENST00000479941 ARHGEF16Q5VV41 709 aa12.46□□□□□ -0.41
ATG4B-219ENST00000479941 SMARCC2Q8TAQ2 1214 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms