RNA–Protein interactions for RNA: ENST00000469080.5

USP11-206, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 1 (best)

Gene USP11, Length 3,467 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-206ENST00000469080 PLA2G4DQ86XP0 818 aa13.73□□□□□ -0.21
USP11-206ENST00000469080 IRX2Q9BZI1 471 aaPredicted RBP13.73□□□□□ -0.21
USP11-206ENST00000469080 SLC39A2Q9NP94 309 aa13.73□□□□□ -0.21
USP11-206ENST00000469080 DAGLAQ9Y4D2 1042 aa13.73□□□□□ -0.21
USP11-206ENST00000469080 POTEMA6NI47 508 aa13.72□□□□□ -0.21
USP11-206ENST00000469080 MTIF2P46199 727 aaKnown RBP13.72□□□□□ -0.21
USP11-206ENST00000469080 CCDC174Q6PII3 467 aa13.72□□□□□ -0.21
USP11-206ENST00000469080 NELFCDQ8IXH7 590 aa13.72□□□□□ -0.21
USP11-206ENST00000469080 RPUSD2Q8IZ73 545 aaKnown RBP13.72□□□□□ -0.21
USP11-206ENST00000469080 FUT8Q9BYC5 575 aa13.72□□□□□ -0.21
USP11-206ENST00000469080 SPATA31A6Q5VVP1 1343 aa13.72□□□□□ -0.21
USP11-206ENST00000469080 CNTNAP4Q9C0A0 1308 aa13.72□□□□□ -0.21
USP11-206ENST00000469080 A0A1B0GUA9 196 aa13.72□□□□□ -0.21
USP11-206ENST00000469080 PRPF3O43395 683 aaKnown RBP13.72□□□□□ -0.21
USP11-206ENST00000469080 CBFA2T2O43439 604 aa13.72□□□□□ -0.21
USP11-206ENST00000469080 RASA1P20936 1047 aa13.72□□□□□ -0.21
USP11-206ENST00000469080 CCT5P48643 541 aa13.72□□□□□ -0.21
USP11-206ENST00000469080 SP4Q02446 784 aa13.72□□□□□ -0.21
USP11-206ENST00000469080 PTPROQ16827 1216 aa13.72□□□□□ -0.21
USP11-206ENST00000469080 CPXCR1Q8N123 301 aa13.72□□□□□ -0.21
USP11-206ENST00000469080 CCDC26Q8TAB7 109 aa13.72□□□□□ -0.21
USP11-206ENST00000469080 SHISA4Q96DD7 197 aa13.72□□□□□ -0.21
USP11-206ENST00000469080 MRFAP1L1Q96HT8 127 aa13.72□□□□□ -0.21
USP11-206ENST00000469080 MAGEC2Q9UBF1 373 aaPredicted RBP13.72□□□□□ -0.21
USP11-206ENST00000469080 DDX39AO00148 427 aaKnown RBP13.72□□□□□ -0.21
USP11-206ENST00000469080 PPP6R2O75170 966 aa13.72□□□□□ -0.21
USP11-206ENST00000469080 EIF3JO75822 258 aaKnown RBP13.72□□□□□ -0.21
USP11-206ENST00000469080 CYP4A11Q02928 519 aa13.72□□□□□ -0.21
USP11-206ENST00000469080 PPARDQ03181 441 aa13.72□□□□□ -0.21
USP11-206ENST00000469080 IGSF22Q8N9C0 903 aa13.72□□□□□ -0.21
USP11-206ENST00000469080 PARD3BQ8TEW8 1205 aa13.72□□□□□ -0.21
USP11-206ENST00000469080 TEKT1Q969V4 418 aa13.72□□□□□ -0.21
USP11-206ENST00000469080 CCDC97Q96F63 343 aaPredicted RBP13.72□□□□□ -0.21
USP11-206ENST00000469080 PAGE5Q96GU1 130 aa13.72□□□□□ -0.21
USP11-206ENST00000469080 CABS1Q96KC9 395 aa13.72□□□□□ -0.21
USP11-206ENST00000469080 C6orf50Q9HD87 102 aa13.72□□□□□ -0.21
USP11-206ENST00000469080 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.72□□□□□ -0.21
USP11-206ENST00000469080 FLT1P17948 1338 aa13.71□□□□□ -0.21
USP11-206ENST00000469080 SYNRGQ9UMZ2 1314 aa13.71□□□□□ -0.21
USP11-206ENST00000469080 ENO4A6NNW6 628 aa13.71□□□□□ -0.21
USP11-206ENST00000469080 HOXA13P31271 388 aaPredicted RBP13.71□□□□□ -0.21
USP11-206ENST00000469080 RWDD2BP57060 319 aa13.71□□□□□ -0.21
USP11-206ENST00000469080 UBXN1Q04323 297 aa13.71□□□□□ -0.21
USP11-206ENST00000469080 PDE4DQ08499 809 aa13.71□□□□□ -0.21
USP11-206ENST00000469080 SF3B2Q13435 895 aaKnown RBP13.71□□□□□ -0.21
USP11-206ENST00000469080 ARMCX5Q6P1M9 558 aa13.71□□□□□ -0.21
USP11-206ENST00000469080 ZNF483Q8TF39 744 aaPredicted RBP13.71□□□□□ -0.21
USP11-206ENST00000469080 PARD6BQ9BYG5 372 aa13.71□□□□□ -0.21
USP11-206ENST00000469080 DDX4Q9NQI0 724 aaKnown RBP13.71□□□□□ -0.21
USP11-206ENST00000469080 DACH1Q9UI36 760 aa13.71□□□□□ -0.21
USP11-206ENST00000469080 COL1A1P02452 1464 aaPredicted RBP13.71□□□□□ -0.21
USP11-206ENST00000469080 DISP2A7MBM2 1401 aa13.71□□□□□ -0.21
USP11-206ENST00000469080 ECEL1O95672 775 aa13.71□□□□□ -0.22
USP11-206ENST00000469080 BMP6P22004 513 aa13.71□□□□□ -0.22
USP11-206ENST00000469080 ACTN3Q08043 901 aaPredicted RBP13.71□□□□□ -0.22
USP11-206ENST00000469080 TRIM74Q86UV6 250 aa13.71□□□□□ -0.22
USP11-206ENST00000469080 TRIM73Q86UV7 250 aa13.71□□□□□ -0.22
USP11-206ENST00000469080 PICK1Q9NRD5 415 aa13.71□□□□□ -0.22
USP11-206ENST00000469080 PUF60Q9UHX1 559 aaKnown RBP13.71□□□□□ -0.22
USP11-206ENST00000469080 SERPINB13Q9UIV8 391 aa13.71□□□□□ -0.22
USP11-206ENST00000469080 SRPRBQ9Y5M8 271 aaKnown RBP13.71□□□□□ -0.22
USP11-206ENST00000469080 PARP4Q9UKK3 1724 aaKnown RBP13.71□□□□□ -0.22
USP11-206ENST00000469080 SLIT2O94813 1529 aa13.71□□□□□ -0.22
USP11-206ENST00000469080 CNTNAP5Q8WYK1 1306 aa13.71□□□□□ -0.22
USP11-206ENST00000469080 MEIS1O00470 390 aa13.7□□□□□ -0.22
USP11-206ENST00000469080 EBAG9O00559 213 aa13.7□□□□□ -0.22
USP11-206ENST00000469080 ZBTB7AO95365 584 aa13.7□□□□□ -0.22
USP11-206ENST00000469080 CALML3P27482 149 aa13.7□□□□□ -0.22
USP11-206ENST00000469080 SLF2Q8IX21 1173 aa13.7□□□□□ -0.22
USP11-206ENST00000469080 REXO1Q8N1G1 1221 aaKnown RBP13.7□□□□□ -0.22
USP11-206ENST00000469080 LARGE2Q8N3Y3 721 aa13.7□□□□□ -0.22
USP11-206ENST00000469080 GJA3Q9Y6H8 435 aa13.7□□□□□ -0.22
USP11-206ENST00000469080 USP17L10C9JJH3 530 aa13.7□□□□□ -0.22
USP11-206ENST00000469080 CYTH3O43739 400 aa13.7□□□□□ -0.22
USP11-206ENST00000469080 TADA3O75528 432 aa13.7□□□□□ -0.22
USP11-206ENST00000469080 TDP2O95551 362 aa13.7□□□□□ -0.22
USP11-206ENST00000469080 RCSD1Q6JBY9 416 aa13.7□□□□□ -0.22
USP11-206ENST00000469080 NELFBQ8WX92 580 aa13.7□□□□□ -0.22
USP11-206ENST00000469080 TATDN2Q93075 761 aa13.7□□□□□ -0.22
USP11-206ENST00000469080 PSMB7Q99436 277 aa13.7□□□□□ -0.22
USP11-206ENST00000469080 SUDS3Q9H7L9 328 aaPredicted RBP13.7□□□□□ -0.22
USP11-206ENST00000469080 ZNF277Q9NRM2 450 aaPredicted RBP13.7□□□□□ -0.22
USP11-206ENST00000469080 TFR2Q9UP52 801 aa13.7□□□□□ -0.22
USP11-206ENST00000469080 FAM169AQ9Y6X4 670 aa13.7□□□□□ -0.22
USP11-206ENST00000469080 CFBP00751 764 aa13.7□□□□□ -0.22
USP11-206ENST00000469080 TRAF1Q13077 416 aa13.7□□□□□ -0.22
USP11-206ENST00000469080 SEPT2Q15019 361 aa13.7□□□□□ -0.22
USP11-206ENST00000469080 CCDC12Q8WUD4 166 aaPredicted RBP13.7□□□□□ -0.22
USP11-206ENST00000469080 PPP1R13BQ96KQ4 1090 aa13.7□□□□□ -0.22
USP11-206ENST00000469080 COL14A1Q05707 1796 aaKnown RBP13.69□□□□□ -0.22
USP11-206ENST00000469080 NUP98P52948 1817 aa13.69□□□□□ -0.22
USP11-206ENST00000469080 EFCAB8A8MWE9 144 aa13.69□□□□□ -0.22
USP11-206ENST00000469080 BBOX1O75936 387 aa13.69□□□□□ -0.22
USP11-206ENST00000469080 NONOQ15233 471 aaKnown RBP eCLIP13.69□□□□□ -0.22
USP11-206ENST00000469080 PRAMEF18Q5VWM3 479 aa13.69□□□□□ -0.22
USP11-206ENST00000469080 CCDC47Q96A33 483 aaKnown RBP13.69□□□□□ -0.22
USP11-206ENST00000469080 SH2D3AQ9BRG2 576 aa13.69□□□□□ -0.22
USP11-206ENST00000469080 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.69□□□□□ -0.22
USP11-206ENST00000469080 MYO1FO00160 1098 aa13.69□□□□□ -0.22
USP11-206ENST00000469080 CD44P16070 742 aaKnown RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms