RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 APOA1P02647 267 aa10.08□□□□□ -0.8
VPS13A-203ENST00000360280 PODNQ7Z5L7 613 aa10.08□□□□□ -0.8
VPS13A-203ENST00000360280 SLFN12Q8IYM2 578 aa10.08□□□□□ -0.8
VPS13A-203ENST00000360280 MAFGO15525 162 aa10.08□□□□□ -0.8
VPS13A-203ENST00000360280 ETF1P62495 437 aaKnown RBP10.08□□□□□ -0.8
VPS13A-203ENST00000360280 CABP7Q86V35 215 aa10.08□□□□□ -0.8
VPS13A-203ENST00000360280 DDX42Q86XP3 938 aaKnown RBP eCLIP10.08□□□□□ -0.8
VPS13A-203ENST00000360280 METTL14Q9HCE5 456 aaKnown RBP10.08□□□□□ -0.8
VPS13A-203ENST00000360280 NIP7Q9Y221 180 aaKnown RBP eCLIP10.08□□□□□ -0.8
VPS13A-203ENST00000360280 NR1D1P20393 614 aa10.08□□□□□ -0.8
VPS13A-203ENST00000360280 LIG4P49917 911 aa10.08□□□□□ -0.8
VPS13A-203ENST00000360280 DHX38Q92620 1227 aaKnown RBP10.08□□□□□ -0.8
VPS13A-203ENST00000360280 MTBPQ96DY7 904 aa10.08□□□□□ -0.8
VPS13A-203ENST00000360280 DESI2Q9BSY9 194 aa10.08□□□□□ -0.8
VPS13A-203ENST00000360280 GAS7O60861 476 aa10.08□□□□□ -0.8
VPS13A-203ENST00000360280 CYP2J2P51589 502 aa10.08□□□□□ -0.8
VPS13A-203ENST00000360280 TMEM259Q4ZIN3 620 aa10.08□□□□□ -0.8
VPS13A-203ENST00000360280 MMS22LQ6ZRQ5 1243 aa10.08□□□□□ -0.8
VPS13A-203ENST00000360280 MYH10P35580 1976 aa10.08□□□□□ -0.8
VPS13A-203ENST00000360280 SLFN14P0C7P3 912 aa10.08□□□□□ -0.8
VPS13A-203ENST00000360280 MAGEA9P43362 315 aa10.08□□□□□ -0.8
VPS13A-203ENST00000360280 OCRLQ01968 901 aa10.08□□□□□ -0.8
VPS13A-203ENST00000360280 NCLNQ969V3 563 aa10.08□□□□□ -0.8
VPS13A-203ENST00000360280 CHCHD3Q9NX63 227 aaKnown RBP10.08□□□□□ -0.8
VPS13A-203ENST00000360280 MYCLP12524 364 aaPredicted RBP10.07□□□□□ -0.8
VPS13A-203ENST00000360280 SGO2Q562F6 1265 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 ICA1LQ8NDH6 482 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 PPP1R12AO14974 1030 aaPredicted RBP10.07□□□□□ -0.8
VPS13A-203ENST00000360280 GPBP1Q86WP2 473 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 WBP4O75554 376 aaKnown RBP10.07□□□□□ -0.8
VPS13A-203ENST00000360280 SLC1A4P43007 532 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 CEP85Q6P2H3 762 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 STOML1Q9UBI4 398 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 KRT87PA6NCN2 255 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 H7C1D1 291 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 ADALQ6DHV7 355 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 MAEAQ7L5Y9 396 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 KDRP35968 1356 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 IQANK1A0A1B0GTG1 560 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 NUDCD1Q96RS6 583 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 ATP6V0A4Q9HBG4 840 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 EIF3DO15371 548 aaKnown RBP eCLIP10.07□□□□□ -0.83e-6■■□□□ 12.2
VPS13A-203ENST00000360280 NR1H4Q96RI1 486 aaPredicted RBP10.07□□□□□ -0.8
VPS13A-203ENST00000360280 RNF14Q9UBS8 474 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 INTUQ9ULD6 942 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 E2F6O75461 281 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 ECEL1O95672 775 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 OCM2P0CE71 109 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 OCMP0CE72 109 aaPredicted RBP10.07□□□□□ -0.8
VPS13A-203ENST00000360280 COG4Q9H9E3 785 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 CCDC78A2IDD5 438 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 ZBTB41Q5SVQ8 909 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 PMS1P54277 932 aaKnown RBP10.07□□□□□ -0.8
VPS13A-203ENST00000360280 SLC12A1Q13621 1099 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 DEPDC1BQ8WUY9 529 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 B4E1Z4 1266 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 RWDD2BP57060 319 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 FSCBQ5H9T9 825 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 CLEC11AQ9Y240 323 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 PPIP5K1Q6PFW1 1433 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 AQRO60306 1485 aaKnown RBP eCLIP10.07□□□□□ -0.86e-9■■■■■ 67.2
VPS13A-203ENST00000360280 PRR23D1E9PI22 279 aaPredicted RBP10.07□□□□□ -0.8
VPS13A-203ENST00000360280 PRR23D2P0DMB1 279 aaPredicted RBP10.07□□□□□ -0.8
VPS13A-203ENST00000360280 CARSP49589 748 aaKnown RBP10.07□□□□□ -0.8
VPS13A-203ENST00000360280 LRMPQ12912 555 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 PUM3Q15397 648 aaKnown RBP10.07□□□□□ -0.8
VPS13A-203ENST00000360280 NEK8Q86SG6 692 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 PPP1R13BQ96KQ4 1090 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 PHF8Q9UPP1 1060 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 ATP8A1Q9Y2Q0 1164 aa10.07□□□□□ -0.8
VPS13A-203ENST00000360280 TRPC1P48995 793 aa10.06□□□□□ -0.8
VPS13A-203ENST00000360280 GNPTABQ3T906 1256 aa10.06□□□□□ -0.8
VPS13A-203ENST00000360280 SPOUT1Q5T280 376 aaKnown RBP10.06□□□□□ -0.8
VPS13A-203ENST00000360280 SFMBT1Q9UHJ3 866 aa10.06□□□□□ -0.8
VPS13A-203ENST00000360280 EPN1Q9Y6I3 576 aaPredicted RBP10.06□□□□□ -0.8
VPS13A-203ENST00000360280 SBNO1A3KN83 1393 aa10.06□□□□□ -0.8
VPS13A-203ENST00000360280 MORF4L2Q15014 288 aa10.06□□□□□ -0.8
VPS13A-203ENST00000360280 MYLK4Q86YV6 388 aaPredicted RBP10.06□□□□□ -0.8
VPS13A-203ENST00000360280 PGBD1Q96JS3 809 aa10.06□□□□□ -0.8
VPS13A-203ENST00000360280 DDX28Q9NUL7 540 aaKnown RBP10.06□□□□□ -0.8
VPS13A-203ENST00000360280 NDE1Q9NXR1 346 aa10.06□□□□□ -0.8
VPS13A-203ENST00000360280 L3MBTL1Q9Y468 752 aa10.06□□□□□ -0.8
VPS13A-203ENST00000360280 CRLF3Q8IUI8 442 aa10.06□□□□□ -0.8
VPS13A-203ENST00000360280 ZBTB8OSQ8IWT0 167 aa10.06□□□□□ -0.8
VPS13A-203ENST00000360280 TMCC1O94876 653 aa10.06□□□□□ -0.8
VPS13A-203ENST00000360280 KIF19Q2TAC6 998 aa10.06□□□□□ -0.8
VPS13A-203ENST00000360280 ZNF280CQ8ND82 737 aa10.06□□□□□ -0.8
VPS13A-203ENST00000360280 ADPGKQ9BRR6 497 aa10.06□□□□□ -0.8
VPS13A-203ENST00000360280 UBN1Q9NPG3 1134 aa10.06□□□□□ -0.8
VPS13A-203ENST00000360280 PTPREP23469 700 aa10.06□□□□□ -0.8
VPS13A-203ENST00000360280 STAT2P52630 851 aa10.06□□□□□ -0.8
VPS13A-203ENST00000360280 ZC3H12BQ5HYM0 836 aaKnown RBP10.06□□□□□ -0.8
VPS13A-203ENST00000360280 PATL1Q86TB9 770 aaKnown RBP10.06□□□□□ -0.8
VPS13A-203ENST00000360280 NOP9Q86U38 636 aaKnown RBP10.06□□□□□ -0.8
VPS13A-203ENST00000360280 LZICQ8WZA0 190 aa10.06□□□□□ -0.8
VPS13A-203ENST00000360280 GYG2O15488 501 aa10.06□□□□□ -0.8
VPS13A-203ENST00000360280 PTK2Q05397 1052 aa10.06□□□□□ -0.8
VPS13A-203ENST00000360280 THOC5Q13769 683 aaKnown RBP10.06□□□□□ -0.8
VPS13A-203ENST00000360280 RBM6P78332 1123 aaKnown RBP10.06□□□□□ -0.8
VPS13A-203ENST00000360280 COPS6Q7L5N1 327 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms