RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 SLC27A2O14975 620 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 EDIL3O43854 480 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 CYP21A2P08686 494 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 RARAP10276 462 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 XRCC6P12956 609 aaKnown RBP eCLIP2.81□□□□□ -1.96
VPS54-202ENST00000354504 ST13P50502 369 aaKnown RBP2.81□□□□□ -1.96
VPS54-202ENST00000354504 SPEM2Q0P670 501 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 NMIQ13287 307 aaPredicted RBP2.81□□□□□ -1.96
VPS54-202ENST00000354504 NPY5RQ15761 445 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 ME3Q16798 604 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 SLC35G1Q2M3R5 365 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 SLC10A5Q5PT55 438 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 SUSD4Q5VX71 490 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 SMIM5Q71RC9 77 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 OR13H1Q8NG92 308 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 RTF1Q92541 710 aaKnown RBP2.81□□□□□ -1.96
VPS54-202ENST00000354504 OSBP2Q969R2 916 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 INTS4Q96HW7 963 aaKnown RBP2.81□□□□□ -1.96
VPS54-202ENST00000354504 OSMRQ99650 979 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 DBNDD2Q9BQY9 259 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 TGIF2Q9GZN2 237 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 FRRS1LQ9P0K9 344 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 XIRP2A4UGR9 3374 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 PLXNA1Q9UIW2 1896 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 ROBO3Q96MS0 1386 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 TM4SF5O14894 197 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 ERC2O15083 957 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 UBTFL1P0CB47 393 aaPredicted RBP2.8□□□□□ -1.96
VPS54-202ENST00000354504 HCLS1P14317 486 aaPredicted RBP2.8□□□□□ -1.96
VPS54-202ENST00000354504 TFE3P19532 575 aaPredicted RBP2.8□□□□□ -1.96
VPS54-202ENST00000354504 EIF4BP23588 611 aaKnown RBP2.8□□□□□ -1.96
VPS54-202ENST00000354504 IL6STP40189 918 aaPredicted RBP2.8□□□□□ -1.96
VPS54-202ENST00000354504 DGKGP49619 791 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 KIAA0319Q5VV43 1072 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 PRPF40BQ6NWY9 871 aaKnown RBP2.8□□□□□ -1.96
VPS54-202ENST00000354504 RHOVQ96L33 236 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 HSD3B7Q9H2F3 369 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 GREM2Q9H772 168 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 ZNF408Q9H9D4 720 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 TRIM33Q9UPN9 1127 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 ATXN7O15265 892 aaPredicted RBP2.8□□□□□ -1.96
VPS54-202ENST00000354504 DNAJA2O60884 412 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 DTNBO60941 627 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 GADD45BO75293 160 aaPredicted RBP2.8□□□□□ -1.96
VPS54-202ENST00000354504 BAG4O95429 457 aaKnown RBP2.8□□□□□ -1.96
VPS54-202ENST00000354504 MAP4K4O95819 1239 aaPredicted RBP2.8□□□□□ -1.96
VPS54-202ENST00000354504 MYL6BP14649 208 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 EIF2S2P20042 333 aaKnown RBP2.8□□□□□ -1.96
VPS54-202ENST00000354504 DEKP35659 375 aaKnown RBP2.8□□□□□ -1.96
VPS54-202ENST00000354504 GJA8P48165 433 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 AK2P54819 239 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 ZNF445P59923 1031 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 TAF1CQ15572 869 aaPredicted RBP2.8□□□□□ -1.96
VPS54-202ENST00000354504 NTRK3Q16288 839 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 CCDC144BQ3MJ40 725 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 DHX32Q7L7V1 743 aaKnown RBP2.8□□□□□ -1.96
VPS54-202ENST00000354504 NBPF11Q86T75 865 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 MB21D2Q8IYB1 491 aaPredicted RBP2.8□□□□□ -1.96
VPS54-202ENST00000354504 CELF2-AS1Q8N7Q2 184 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 ZFYVE1Q9HBF4 777 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 CDH23Q9H251 3354 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 DLGAP3O95886 979 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 ATF4P18848 351 aaPredicted RBP2.8□□□□□ -1.96
VPS54-202ENST00000354504 KLRK1P26718 216 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 RABEP1Q15276 862 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 ZNF423Q2M1K9 1284 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 CRY2Q49AN0 593 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 SLC4A10Q6U841 1118 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 VN1R5Q7Z5H4 357 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 JAZF1Q86VZ6 243 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 CCNJLQ8IV13 435 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 DRC1Q96MC2 740 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 PANK2Q9BZ23 570 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 PUS7LQ9H0K6 701 aaKnown RBP2.8□□□□□ -1.96
VPS54-202ENST00000354504 AKAP2Q9Y2D5 859 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 EYSQ5T1H1 3165 aa2.8□□□□□ -1.96
VPS54-202ENST00000354504 PDS5AQ29RF7 1337 aaKnown RBP2.79□□□□□ -1.96
VPS54-202ENST00000354504 CRKLP46109 303 aaKnown RBP2.79□□□□□ -1.96
VPS54-202ENST00000354504 ATP2B2Q01814 1243 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 SEPT6Q14141 434 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 ZNF468Q5VIY5 522 aaPredicted RBP2.79□□□□□ -1.96
VPS54-202ENST00000354504 CREB3L3Q68CJ9 461 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 CCDC129Q6ZRS4 1044 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 ASAP3Q8TDY4 903 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 WDR89Q96FK6 387 aaPredicted RBP2.79□□□□□ -1.96
VPS54-202ENST00000354504 PIH1D3Q9NQM4 214 aaKnown RBP2.79□□□□□ -1.96
VPS54-202ENST00000354504 SH2B1Q9NRF2 756 aaPredicted RBP2.79□□□□□ -1.96
VPS54-202ENST00000354504 ECHDC1Q9NTX5 307 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 GINM1Q9NU53 330 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 NLRP2Q9NX02 1062 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 MTMR6Q9Y217 621 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 MYH11P35749 1972 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 SNAP23O00161 211 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 KIF4AO95239 1232 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 HSP90AB1P08238 724 aaKnown RBP2.79□□□□□ -1.96
VPS54-202ENST00000354504 SPATA31C1P0DKV0 1188 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 EPHA1P21709 976 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 FGFR3P22607 806 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 SOX18P35713 384 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 CTSWP56202 376 aa2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 94.3 ms