RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 SMCO2A6NFE2 343 aa25.68■■□□□ 1.7
CDX1-201ENST00000231656 BIN1O00499 593 aa25.68■■□□□ 1.7
CDX1-201ENST00000231656 IRF6O14896 467 aa25.68■■□□□ 1.7
CDX1-201ENST00000231656 ITGBL1O95965 494 aaPredicted RBP25.68■■□□□ 1.7
CDX1-201ENST00000231656 FKBP1BP68106 108 aa25.68■■□□□ 1.7
CDX1-201ENST00000231656 SARM1Q6SZW1 724 aa25.68■■□□□ 1.7
CDX1-201ENST00000231656 SMCHD1A6NHR9 2005 aa25.68■■□□□ 1.7
CDX1-201ENST00000231656 ESYT2A0FGR8 921 aa25.67■■□□□ 1.7
CDX1-201ENST00000231656 UNCXA6NJT0 531 aa25.67■■□□□ 1.7
CDX1-201ENST00000231656 CELF2O95319 508 aaKnown RBP25.67■■□□□ 1.7
CDX1-201ENST00000231656 ZNF75DP51815 510 aa25.67■■□□□ 1.7
CDX1-201ENST00000231656 PPP1R18Q6NYC8 613 aa25.67■■□□□ 1.7
CDX1-201ENST00000231656 SAMD1Q6SPF0 538 aaPredicted RBP25.67■■□□□ 1.7
CDX1-201ENST00000231656 PRPF38AQ8NAV1 312 aaKnown RBP25.67■■□□□ 1.7
CDX1-201ENST00000231656 SLF1Q9BQI6 1058 aa25.67■■□□□ 1.7
CDX1-201ENST00000231656 RANBP17Q9H2T7 1088 aaKnown RBP25.67■■□□□ 1.7
CDX1-201ENST00000231656 GBA2Q9HCG7 927 aaPredicted RBP25.67■■□□□ 1.7
CDX1-201ENST00000231656 SERTAD1Q9UHV2 236 aa25.67■■□□□ 1.7
CDX1-201ENST00000231656 ACTN4O43707 911 aaKnown RBP25.67■■□□□ 1.7
CDX1-201ENST00000231656 MSNP26038 577 aaKnown RBP25.67■■□□□ 1.7
CDX1-201ENST00000231656 FBXO11Q86XK2 927 aa25.67■■□□□ 1.7
CDX1-201ENST00000231656 AOPEPQ8N6M6 819 aa25.67■■□□□ 1.7
CDX1-201ENST00000231656 C4orf32Q8N8J7 132 aa25.67■■□□□ 1.7
CDX1-201ENST00000231656 AMNQ9BXJ7 453 aa25.67■■□□□ 1.7
CDX1-201ENST00000231656 C6orf50Q9HD87 102 aa25.67■■□□□ 1.7
CDX1-201ENST00000231656 PCDHA1Q9Y5I3 950 aa25.67■■□□□ 1.7
CDX1-201ENST00000231656 TRPM7Q96QT4 1865 aa25.66■■□□□ 1.7
CDX1-201ENST00000231656 CCDC194A0A1B0GVG4 234 aa25.66■■□□□ 1.7
CDX1-201ENST00000231656 BECN2A8MW95 431 aa25.66■■□□□ 1.7
CDX1-201ENST00000231656 FOXN1O15353 648 aa25.66■■□□□ 1.7
CDX1-201ENST00000231656 FLOT1O75955 427 aa25.66■■□□□ 1.7
CDX1-201ENST00000231656 GNA11P29992 359 aa25.66■■□□□ 1.7
CDX1-201ENST00000231656 MCM7P33993 719 aa25.66■■□□□ 1.7
CDX1-201ENST00000231656 PPIL2Q13356 520 aa25.66■■□□□ 1.7
CDX1-201ENST00000231656 OPTNQ96CV9 577 aa25.66■■□□□ 1.7
CDX1-201ENST00000231656 GPBP1L1Q9HC44 474 aaPredicted RBP25.66■■□□□ 1.7
CDX1-201ENST00000231656 RLFQ13129 1914 aa25.65■■□□□ 1.7
CDX1-201ENST00000231656 SYMPKQ92797 1274 aaKnown RBP25.65■■□□□ 1.7
CDX1-201ENST00000231656 EPSTI1Q96J88 318 aa25.65■■□□□ 1.7
CDX1-201ENST00000231656 HOOK1Q9UJC3 728 aaKnown RBP25.65■■□□□ 1.7
CDX1-201ENST00000231656 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP25.65■■□□□ 1.7
CDX1-201ENST00000231656 A0A087X0B3 334 aa25.64■■□□□ 1.7
CDX1-201ENST00000231656 C2orf69Q8N8R5 385 aa25.64■■□□□ 1.7
CDX1-201ENST00000231656 SLC10A4Q96EP9 437 aa25.64■■□□□ 1.7
CDX1-201ENST00000231656 TRIM5Q9C035 493 aa25.64■■□□□ 1.7
CDX1-201ENST00000231656 PPP1R9AQ9ULJ8 1098 aa25.64■■□□□ 1.7
CDX1-201ENST00000231656 KCNH4Q9UQ05 1017 aa25.64■■□□□ 1.7
CDX1-201ENST00000231656 PCDHA5Q9Y5H7 936 aa25.64■■□□□ 1.7
CDX1-201ENST00000231656 LOC285556D6RIA3 1793 aa25.64■■□□□ 1.69
CDX1-201ENST00000231656 VWA3AA6NCI4 1184 aa25.64■■□□□ 1.69
CDX1-201ENST00000231656 CXCL11O14625 94 aa25.64■■□□□ 1.69
CDX1-201ENST00000231656 POSTNQ15063 836 aa25.64■■□□□ 1.69
CDX1-201ENST00000231656 IL17AQ16552 155 aa25.64■■□□□ 1.69
CDX1-201ENST00000231656 USH1GQ495M9 461 aa25.64■■□□□ 1.69
CDX1-201ENST00000231656 CST9Q5W186 159 aa25.64■■□□□ 1.69
CDX1-201ENST00000231656 CCDC174Q6PII3 467 aa25.64■■□□□ 1.69
CDX1-201ENST00000231656 A0A0G2JLL6 359 aaPredicted RBP25.63■■□□□ 1.69
CDX1-201ENST00000231656 ADCY7P51828 1080 aa25.63■■□□□ 1.69
CDX1-201ENST00000231656 ARL6IP4Q66PJ3 421 aaKnown RBP25.63■■□□□ 1.69
CDX1-201ENST00000231656 KANK3Q6NY19 840 aa25.63■■□□□ 1.69
CDX1-201ENST00000231656 ARHGAP30Q7Z6I6 1101 aaPredicted RBP25.63■■□□□ 1.69
CDX1-201ENST00000231656 PRRT2Q7Z6L0 340 aaPredicted RBP25.63■■□□□ 1.69
CDX1-201ENST00000231656 PDILTQ8N807 584 aa25.63■■□□□ 1.69
CDX1-201ENST00000231656 PRR29P0C7W0 189 aa25.62■■□□□ 1.69
CDX1-201ENST00000231656 NT5DC1Q5TFE4 455 aa25.62■■□□□ 1.69
CDX1-201ENST00000231656 CATSPERGQ6ZRH7 1159 aa25.62■■□□□ 1.69
CDX1-201ENST00000231656 RIC8AQ9NPQ8 531 aa25.62■■□□□ 1.69
CDX1-201ENST00000231656 INF2Q27J81 1249 aa25.61■■□□□ 1.69
CDX1-201ENST00000231656 ISM2Q6H9L7 571 aa25.61■■□□□ 1.69
CDX1-201ENST00000231656 KRT25Q7Z3Z0 450 aa25.61■■□□□ 1.69
CDX1-201ENST00000231656 USP17L15C9J2P7 530 aa25.61■■□□□ 1.69
CDX1-201ENST00000231656 USP17L13C9JLJ4 530 aa25.61■■□□□ 1.69
CDX1-201ENST00000231656 USP17L11C9JVI0 530 aa25.61■■□□□ 1.69
CDX1-201ENST00000231656 USP17L18D6R9N7 530 aa25.61■■□□□ 1.69
CDX1-201ENST00000231656 USP17L22D6RA61 530 aa25.61■■□□□ 1.69
CDX1-201ENST00000231656 USP17L17D6RBQ6 530 aa25.61■■□□□ 1.69
CDX1-201ENST00000231656 USP17L19D6RCP7 530 aa25.61■■□□□ 1.69
CDX1-201ENST00000231656 USP17L20D6RJB6 530 aa25.61■■□□□ 1.69
CDX1-201ENST00000231656 ZNF500O60304 480 aaPredicted RBP25.61■■□□□ 1.69
CDX1-201ENST00000231656 TAL1P17542 331 aaPredicted RBP25.61■■□□□ 1.69
CDX1-201ENST00000231656 CDC25BP30305 580 aa25.61■■□□□ 1.69
CDX1-201ENST00000231656 GJA5P36382 358 aa25.61■■□□□ 1.69
CDX1-201ENST00000231656 SARSP49591 514 aaKnown RBP25.61■■□□□ 1.69
CDX1-201ENST00000231656 USP17L24Q0WX57 530 aa25.61■■□□□ 1.69
CDX1-201ENST00000231656 SPC24Q8NBT2 197 aa25.61■■□□□ 1.69
CDX1-201ENST00000231656 PROCA1Q8NCQ7 364 aaPredicted RBP25.61■■□□□ 1.69
CDX1-201ENST00000231656 CUL5Q93034 780 aa25.61■■□□□ 1.69
CDX1-201ENST00000231656 PSTPIP2Q9H939 334 aa25.61■■□□□ 1.69
CDX1-201ENST00000231656 SLC38A10Q9HBR0 1119 aa25.61■■□□□ 1.69
CDX1-201ENST00000231656 TRAF1Q13077 416 aa25.6■■□□□ 1.69
CDX1-201ENST00000231656 NCAPHQ15003 741 aa25.6■■□□□ 1.69
CDX1-201ENST00000231656 TREML2Q5T2D2 321 aa25.6■■□□□ 1.69
CDX1-201ENST00000231656 SH3RF1Q7Z6J0 888 aa25.6■■□□□ 1.69
CDX1-201ENST00000231656 REXO1Q8N1G1 1221 aaKnown RBP25.6■■□□□ 1.69
CDX1-201ENST00000231656 DHX58Q96C10 678 aa25.6■■□□□ 1.69
CDX1-201ENST00000231656 MAN1B1Q9UKM7 699 aa25.6■■□□□ 1.69
CDX1-201ENST00000231656 ZNF536O15090 1300 aa25.6■■□□□ 1.69
CDX1-201ENST00000231656 COL11A1P12107 1806 aaPredicted RBP25.59■■□□□ 1.69
CDX1-201ENST00000231656 SLFN14P0C7P3 912 aa25.59■■□□□ 1.69
CDX1-201ENST00000231656 MRPL12P52815 198 aaKnown RBP25.59■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms