RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 SLFN14P0C7P3 912 aa20.54■□□□□ 0.88
VIM-201ENST00000224237 VCAM1P19320 739 aa20.54■□□□□ 0.88
VIM-201ENST00000224237 MDM2Q00987 491 aaPredicted RBP20.54■□□□□ 0.88
VIM-201ENST00000224237 CALCRLQ16602 461 aa20.54■□□□□ 0.88
VIM-201ENST00000224237 EAPPQ56P03 285 aaPredicted RBP20.54■□□□□ 0.88
VIM-201ENST00000224237 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.54■□□□□ 0.88
VIM-201ENST00000224237 NAT10Q9H0A0 1025 aaKnown RBP20.54■□□□□ 0.88
VIM-201ENST00000224237 EMILIN3Q9NT22 766 aa20.54■□□□□ 0.88
VIM-201ENST00000224237 SMCHD1A6NHR9 2005 aa20.54■□□□□ 0.88
VIM-201ENST00000224237 PHIPQ8WWQ0 1821 aa20.54■□□□□ 0.88
VIM-201ENST00000224237 OPLAHO14841 1288 aa20.54■□□□□ 0.88
VIM-201ENST00000224237 USP11P51784 963 aa20.54■□□□□ 0.88
VIM-201ENST00000224237 IQUBQ8NA54 791 aa20.54■□□□□ 0.88
VIM-201ENST00000224237 TAF1DQ9H5J8 278 aaPredicted RBP20.54■□□□□ 0.88
VIM-201ENST00000224237 MRPL11Q9Y3B7 192 aaKnown RBP20.54■□□□□ 0.88
VIM-201ENST00000224237 SLC37A4O43826 429 aa20.53■□□□□ 0.88
VIM-201ENST00000224237 NLRP12P59046 1061 aa20.53■□□□□ 0.88
VIM-201ENST00000224237 C11orf57Q6ZUT1 292 aaPredicted RBP20.53■□□□□ 0.88
VIM-201ENST00000224237 ZC3H15Q8WU90 426 aaKnown RBP20.53■□□□□ 0.88
VIM-201ENST00000224237 MTMR9Q96QG7 549 aa20.53■□□□□ 0.88
VIM-201ENST00000224237 TANGO6Q9C0B7 1094 aa20.53■□□□□ 0.88
VIM-201ENST00000224237 DDX25Q9UHL0 483 aaKnown RBP20.53■□□□□ 0.88
VIM-201ENST00000224237 ZHX2Q9Y6X8 837 aa20.53■□□□□ 0.88
VIM-201ENST00000224237 ABCB11O95342 1321 aa20.53■□□□□ 0.88
VIM-201ENST00000224237 C19orf81C9J6K1 198 aa20.52■□□□□ 0.88
VIM-201ENST00000224237 E2F4Q16254 413 aa20.52■□□□□ 0.88
VIM-201ENST00000224237 MOXD1Q6UVY6 613 aa20.52■□□□□ 0.88
VIM-201ENST00000224237 LUZP1Q86V48 1076 aa20.52■□□□□ 0.88
VIM-201ENST00000224237 C12orf42Q96LP6 360 aa20.52■□□□□ 0.88
VIM-201ENST00000224237 PPP1R9BQ96SB3 815 aa20.52■□□□□ 0.88
VIM-201ENST00000224237 CCSER1Q9C0I3 900 aa20.52■□□□□ 0.88
VIM-201ENST00000224237 OTOFQ9HC10 1997 aa20.52■□□□□ 0.88
VIM-201ENST00000224237 SCN4AP35499 1836 aa20.52■□□□□ 0.88
VIM-201ENST00000224237 ICAM1P05362 532 aa20.52■□□□□ 0.87
VIM-201ENST00000224237 UBA7P41226 1012 aa20.52■□□□□ 0.87
VIM-201ENST00000224237 TMEM266Q2M3C6 531 aa20.52■□□□□ 0.87
VIM-201ENST00000224237 NT5DC1Q5TFE4 455 aa20.52■□□□□ 0.87
VIM-201ENST00000224237 LDHDQ86WU2 507 aa20.52■□□□□ 0.87
VIM-201ENST00000224237 RPAP3Q9H6T3 665 aaPredicted RBP20.52■□□□□ 0.87
VIM-201ENST00000224237 DISC1Q9NRI5 854 aa20.52■□□□□ 0.87
VIM-201ENST00000224237 PCDHA5Q9Y5H7 936 aa20.52■□□□□ 0.87
VIM-201ENST00000224237 PAPPA2Q9BXP8 1791 aa20.51■□□□□ 0.87
VIM-201ENST00000224237 FOXN1O15353 648 aa20.51■□□□□ 0.87
VIM-201ENST00000224237 PPP1R12BO60237 982 aaPredicted RBP20.51■□□□□ 0.87
VIM-201ENST00000224237 FLOT1O75955 427 aa20.51■□□□□ 0.87
VIM-201ENST00000224237 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.51■□□□□ 0.87
VIM-201ENST00000224237 IGSF22Q8N9C0 903 aa20.51■□□□□ 0.87
VIM-201ENST00000224237 CRYGNQ8WXF5 182 aa20.51■□□□□ 0.87
VIM-201ENST00000224237 CDCA5Q96FF9 252 aa20.51■□□□□ 0.87
VIM-201ENST00000224237 RAB34Q9BZG1 259 aa20.51■□□□□ 0.87
VIM-201ENST00000224237 PPP1R9AQ9ULJ8 1098 aa20.51■□□□□ 0.87
VIM-201ENST00000224237 CYP3A7-CYP3A51PA0A087WV96 503 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 A0A087WWV3 80 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 BIN1O00499 593 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 POTEIP0CG38 1075 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 POTEJP0CG39 1038 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 FDX1P10109 184 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 CYP3A7P24462 503 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 SREBF1P36956 1147 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 FXR2P51116 673 aaKnown RBP eCLIP20.5■□□□□ 0.87
VIM-201ENST00000224237 ARHGAP4P98171 946 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 VGLL4Q14135 290 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 DPCR1Q3MIW9 517 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 MOB2Q70IA6 237 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 SH3RF1Q7Z6J0 888 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 PDLIM2Q96JY6 352 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 CCDC39Q9UFE4 941 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 GCOM1H8Y6P7 765 aaPredicted RBP20.5■□□□□ 0.87
VIM-201ENST00000224237 POLR2MP0CAP2 368 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 CDC25AP30304 524 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 TECP42680 631 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 TXKP42681 527 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 MAP3K9P80192 1104 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 RASSF8Q8NHQ8 419 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 SMARCE1Q969G3 411 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 PAGE5Q96GU1 130 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 P2RX7Q99572 595 aaKnown RBP20.5■□□□□ 0.87
VIM-201ENST00000224237 BPIFA3Q9BQP9 254 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 SLC38A10Q9HBR0 1119 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 PNMA2Q9UL42 364 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 CCPG1Q9ULG6 757 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 SNCAIPQ9Y6H5 919 aa20.5■□□□□ 0.87
VIM-201ENST00000224237 ZNF536O15090 1300 aa20.49■□□□□ 0.87
VIM-201ENST00000224237 WDR90Q96KV7 1748 aa20.49■□□□□ 0.87
VIM-201ENST00000224237 PARP14Q460N5 1801 aa20.49■□□□□ 0.87
VIM-201ENST00000224237 IQCA1LA6NCM1 817 aa20.49■□□□□ 0.87
VIM-201ENST00000224237 SMC2O95347 1197 aa20.49■□□□□ 0.87
VIM-201ENST00000224237 CFBP00751 764 aa20.49■□□□□ 0.87
VIM-201ENST00000224237 PRR29P0C7W0 189 aa20.49■□□□□ 0.87
VIM-201ENST00000224237 HOXA13P31271 388 aaPredicted RBP20.49■□□□□ 0.87
VIM-201ENST00000224237 HMGCS2P54868 508 aa20.49■□□□□ 0.87
VIM-201ENST00000224237 IQCB1Q15051 598 aa20.49■□□□□ 0.87
VIM-201ENST00000224237 PDXDC2PQ6P474 469 aa20.49■□□□□ 0.87
VIM-201ENST00000224237 TRIML1Q8N9V2 468 aa20.49■□□□□ 0.87
VIM-201ENST00000224237 CNKSR2Q8WXI2 1034 aa20.49■□□□□ 0.87
VIM-201ENST00000224237 MBOAT7Q96N66 472 aa20.49■□□□□ 0.87
VIM-201ENST00000224237 PP2D1A8MPX8 630 aa20.48■□□□□ 0.87
VIM-201ENST00000224237 GOLGA6L19H0YKK7 550 aa20.48■□□□□ 0.87
VIM-201ENST00000224237 STAT6P42226 847 aa20.48■□□□□ 0.87
VIM-201ENST00000224237 SARSP49591 514 aaKnown RBP20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms