RNA–Protein interactions for RNA: ENSMUST00000005841.15

Ctcf-201, Transcript of Transcriptional repressor CTCF, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ctcf, Length 3,782 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ctcf-201ENSMUST00000005841 EsrrbQ61539 433 aa18.71■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Trim9Q8C7M3 817 aa18.71■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Tjp2Q9Z0U1 1167 aaKnown RBP18.71■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Mtmr9Q9Z2D0 545 aa18.71■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Ltbp2O08999 1813 aa18.71■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Trappc11B2RXC1 1133 aa18.71■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Usp4P35123 962 aa18.71■□□□□ 0.59
Ctcf-201ENSMUST00000005841 PodnQ7TQ62 611 aa18.71■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Tango6Q8C3S2 1079 aa18.71■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Ccdc43Q9CR29 222 aaKnown RBP18.71■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Syce1Q9D495 329 aa18.71■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Gm21698A0A087WQP8 267 aa18.7■□□□□ 0.58
Ctcf-201ENSMUST00000005841 FechP22315 420 aaKnown RBP18.7■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Capza3P70190 299 aa18.7■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Pram1Q6BCL1 675 aa18.7■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Rnf41Q8BH75 317 aa18.7■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Rassf2Q8BMS9 326 aa18.7■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Stn1Q8K2X3 378 aa18.7■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Arl6ip4Q9JM93 229 aa18.7■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Dennd3A2RT67 1274 aa18.7■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Sec24cG3X972 1096 aaKnown RBP18.7■□□□□ 0.58
Ctcf-201ENSMUST00000005841 TyrobpO54885 114 aa18.7■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Cops6O88545 324 aa18.7■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Eif4a3Q91VC3 411 aaKnown RBP18.7■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Farp2Q91VS8 1065 aa18.7■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Trub2Q91WG3 331 aaKnown RBP18.7■□□□□ 0.58
Ctcf-201ENSMUST00000005841 A0A0U1RNP2 1173 aa18.7■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Tex13cD3YU32 604 aa18.7■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Cracr2aQ3UP38 310 aa18.7■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Carmil2Q3V3V9 1296 aa18.7■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Aox3G3X982 1335 aa18.7■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Krt78E9Q0F0 1068 aa18.69■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Sema3eP70275 775 aa18.69■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Slc9a1Q61165 820 aa18.69■□□□□ 0.58
Ctcf-201ENSMUST00000005841 HelbQ6NVF4 1074 aa18.69■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Drd5Q8BLD9 478 aa18.69■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Ccdc65Q8VHI7 493 aa18.69■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Cap2Q9CYT6 476 aa18.69■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Mzb1Q9D8I1 188 aa18.69■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Fmnl1Q9JL26 1094 aa18.69■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Tmem132bF7BAB2 1078 aa18.69■□□□□ 0.58
Ctcf-201ENSMUST00000005841 QarsQ8BML9 775 aa18.69■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Olfm5Q8BU90 496 aa18.69■□□□□ 0.58
Ctcf-201ENSMUST00000005841 HnrnpdQ60668 355 aaKnown RBP18.69■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Spata2Q8K004 515 aa18.69■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Dnajc28Q8VCE1 385 aa18.69■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Capn9Q9D805 690 aa18.69■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Fam129cD3YZB0 591 aa18.68■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Ppef2O35385 757 aa18.68■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Pja1O55176 578 aa18.68■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Trim43cP86449 446 aa18.68■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Xlr3bQ6P205 226 aa18.68■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Uts2bQ765I1 113 aa18.68■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Ankrd24Q80VM7 985 aa18.68■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Ube2q2Q8K2Z8 378 aa18.68■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Eef1gQ9D8N0 437 aaKnown RBP18.68■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Api5O35841 504 aaKnown RBP18.68■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Opa1P58281 960 aa18.68■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Pafah1b1P63005 410 aaKnown RBP18.68■□□□□ 0.58
Ctcf-201ENSMUST00000005841 PreplQ8C167 725 aa18.68■□□□□ 0.58
Ctcf-201ENSMUST00000005841 GlyctkQ8QZY2 523 aa18.68■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Nup188Q6ZQH8 1759 aa18.68■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Zfp781Q0P5U5 243 aa18.68■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Sycp1Q62209 993 aa18.68■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Wdr44Q6NVE8 915 aa18.68■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Gnl3lQ6PGG6 577 aaKnown RBP18.68■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Slain2Q8CI08 581 aa18.68■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Synpo2Q91YE8 1087 aaKnown RBP18.68■□□□□ 0.58
Ctcf-201ENSMUST00000005841 1700018B08RikQ9DA83 213 aa18.68■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Acot3Q9QYR7 432 aa18.68■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Gm28919A0A087WP35 240 aa18.67■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Gap43P06837 227 aa18.67■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Serpina1bP22599 413 aa18.67■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Sash1P59808 1230 aa18.67■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Casp4P70343 373 aa18.67■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Rhpn1Q61085 643 aa18.67■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Acad11Q80XL6 779 aa18.67■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Fbxo38Q8BMI0 1194 aa18.67■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Gm5814J3QP80 125 aa18.67■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Calm1P0DP26 149 aaKnown RBP18.67■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Calm2P0DP27 149 aaKnown RBP18.67■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Calm3P0DP28 149 aaKnown RBP18.67■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Ift20Q61025 132 aa18.67■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Dnajc8Q6NZB0 253 aaKnown RBP18.67■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Slc51bQ80WK2 128 aa18.67■□□□□ 0.58
Ctcf-201ENSMUST00000005841 VillQ91YD6 859 aa18.67■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Mrfap1Q9CQL7 125 aa18.67■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Arl2bpQ9D385 163 aa18.67■□□□□ 0.58
Ctcf-201ENSMUST00000005841 RcvrnP34057 202 aa18.67■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Ttf2Q5NC05 1138 aa18.67■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Asap3Q5U464 904 aa18.67■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Sorbs1Q62417 1290 aa18.67■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Myo6Q64331 1265 aa18.67■□□□□ 0.58
Ctcf-201ENSMUST00000005841 WlsQ6DID7 541 aa18.67■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Krt40Q6IFX3 439 aa18.67■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Matr3Q8K310 846 aaKnown RBP18.67■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Senp2Q91ZX6 588 aa18.67■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Btbd18A0A0A6YY25 723 aa18.66■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Nr1i2O54915 431 aa18.66■□□□□ 0.58
Ctcf-201ENSMUST00000005841 Rassf9Q8K342 435 aa18.66■□□□□ 0.58
Retrieved 100 of 22,080 RNA–protein pairs in 28.1 ms