Protein–RNA interactions for Protein: P86449

Trim43c, Tripartite motif-containing protein 43C, mousemouse

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim43cP86449 Gm25239-201ENSMUST00000174915 86 ntBASIC40.43■■■■■ 4.06
Trim43cP86449 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC37.64■■■■□ 3.62
Trim43cP86449 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC37.12■■■■□ 3.53
Trim43cP86449 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC36.63■■■■□ 3.45
Trim43cP86449 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC36.61■■■■□ 3.45
Trim43cP86449 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC36.38■■■■□ 3.41
Trim43cP86449 Gm15042-201ENSMUST00000120212 883 ntBASIC35.79■■■■□ 3.32
Trim43cP86449 Gm15045-201ENSMUST00000117359 883 ntBASIC35.23■■■■□ 3.23
Trim43cP86449 Psd-208ENSMUST00000224556 2034 ntBASIC35.02■■■■□ 3.2
Trim43cP86449 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC35.02■■■■□ 3.2
Trim43cP86449 Gm24109-201ENSMUST00000175489 103 ntBASIC34.91■■■■□ 3.18
Trim43cP86449 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC34.42■■■■□ 3.1
Trim43cP86449 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC34.42■■■■□ 3.1
Trim43cP86449 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC34.41■■■■□ 3.1
Trim43cP86449 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC34.3■■■■□ 3.08
Trim43cP86449 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC34.11■■■■□ 3.05
Trim43cP86449 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC33.79■■■■□ 3
Trim43cP86449 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC33.77■■■■□ 3
Trim43cP86449 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC33.77■■■■□ 3
Trim43cP86449 Gm23366-201ENSMUST00000175022 89 ntBASIC33.75■■■□□ 2.99
Trim43cP86449 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC33.7■■■□□ 2.99
Trim43cP86449 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC33.65■■■□□ 2.98
Trim43cP86449 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC33.63■■■□□ 2.97
Trim43cP86449 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC33.61■■■□□ 2.97
Trim43cP86449 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC33.61■■■□□ 2.97
Trim43cP86449 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC33.58■■■□□ 2.97
Trim43cP86449 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC33.55■■■□□ 2.96
Trim43cP86449 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC33.48■■■□□ 2.95
Trim43cP86449 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC33.42■■■□□ 2.94
Trim43cP86449 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.93
Trim43cP86449 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
Trim43cP86449 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC33.12■■■□□ 2.89
Trim43cP86449 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
Trim43cP86449 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC33.04■■■□□ 2.88
Trim43cP86449 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.88
Trim43cP86449 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC32.96■■■□□ 2.87
Trim43cP86449 AC153911.1-202ENSMUST00000218534 1034 ntBASIC32.86■■■□□ 2.85
Trim43cP86449 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC32.76■■■□□ 2.83
Trim43cP86449 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
Trim43cP86449 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
Trim43cP86449 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC32.48■■■□□ 2.79
Trim43cP86449 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC32.44■■■□□ 2.78
Trim43cP86449 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC32.27■■■□□ 2.76
Trim43cP86449 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC32.21■■■□□ 2.75
Trim43cP86449 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
Trim43cP86449 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
Trim43cP86449 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
Trim43cP86449 Gm10524-201ENSMUST00000181931 1893 ntBASIC32.09■■■□□ 2.73
Trim43cP86449 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
Trim43cP86449 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
Trim43cP86449 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
Trim43cP86449 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
Trim43cP86449 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
Trim43cP86449 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC31.85■■■□□ 2.69
Trim43cP86449 Gm25238-201ENSMUST00000174914 89 ntBASIC31.82■■■□□ 2.68
Trim43cP86449 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
Trim43cP86449 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC31.71■■■□□ 2.67
Trim43cP86449 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
Trim43cP86449 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
Trim43cP86449 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Trim43cP86449 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC31.57■■■□□ 2.64
Trim43cP86449 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC31.56■■■□□ 2.64
Trim43cP86449 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
Trim43cP86449 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC31.55■■■□□ 2.64
Trim43cP86449 Gm27325-201ENSMUST00000175467 74 ntBASIC31.54■■■□□ 2.64
Trim43cP86449 CT025624.2-201ENSMUST00000223609 1909 ntBASIC31.49■■■□□ 2.63
Trim43cP86449 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC31.48■■■□□ 2.63
Trim43cP86449 Gm42596-201ENSMUST00000196305 1958 ntBASIC31.48■■■□□ 2.63
Trim43cP86449 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC31.43■■■□□ 2.62
Trim43cP86449 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC31.42■■■□□ 2.62
Trim43cP86449 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC31.39■■■□□ 2.62
Trim43cP86449 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC31.3■■■□□ 2.6
Trim43cP86449 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Trim43cP86449 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Trim43cP86449 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC31.14■■■□□ 2.58
Trim43cP86449 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC31.13■■■□□ 2.57
Trim43cP86449 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Trim43cP86449 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
Trim43cP86449 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
Trim43cP86449 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
Trim43cP86449 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
Trim43cP86449 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC30.89■■■□□ 2.54
Trim43cP86449 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC30.86■■■□□ 2.53
Trim43cP86449 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
Trim43cP86449 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC30.85■■■□□ 2.53
Trim43cP86449 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
Trim43cP86449 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
Trim43cP86449 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC30.81■■■□□ 2.52
Trim43cP86449 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
Trim43cP86449 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC30.75■■■□□ 2.51
Trim43cP86449 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
Trim43cP86449 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
Trim43cP86449 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Trim43cP86449 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
Trim43cP86449 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Trim43cP86449 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC30.58■■■□□ 2.49
Trim43cP86449 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Trim43cP86449 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
Trim43cP86449 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC30.56■■■□□ 2.48
Trim43cP86449 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC30.55■■■□□ 2.48
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms