RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ACRP10323 421 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 VAV1P15498 845 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 LMNB1P20700 586 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 FBLP22087 321 aaKnown RBP1.43□□□□□ -2.18
VPS35-212ENST00000640313 PMLP29590 882 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 MCM7P33993 719 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 THBS2P35442 1172 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 SERPINB4P48594 390 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 EPHB4P54760 987 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 CORO7P57737 925 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 KRTAP10-7P60409 375 aaPredicted RBP1.43□□□□□ -2.18
VPS35-212ENST00000640313 NBPF12Q5TAG4 269 aaPredicted RBP1.43□□□□□ -2.18
VPS35-212ENST00000640313 BICRALQ6AI39 1079 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 TMC7Q7Z402 723 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 CCDC84Q86UT8 332 aaPredicted RBP1.43□□□□□ -2.18
VPS35-212ENST00000640313 AEBP1Q8IUX7 1158 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 TXNDC5Q8NBS9 432 aaKnown RBP1.43□□□□□ -2.18
VPS35-212ENST00000640313 RETREG2Q8NC44 543 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 ALG3Q92685 438 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 ZBTB8AQ96BR9 441 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 ZG16BQ96DA0 208 aa1.43□□□□□ -2.18
VPS35-212ENST00000640313 LCORQ96JN0 433 aaPredicted RBP1.43□□□□□ -2.18
VPS35-212ENST00000640313 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP1.43□□□□□ -2.18
VPS35-212ENST00000640313 ZFR2Q9UPR6 939 aaKnown RBP1.43□□□□□ -2.18
VPS35-212ENST00000640313 A0A1W2PQJ5 194 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 PPP1R15AO75807 674 aaPredicted RBP1.42□□□□□ -2.18
VPS35-212ENST00000640313 ZNF202O95125 648 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 USP17L7P0C7H9 530 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 GLI4P10075 376 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 GBP1P32455 592 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 IL12RB1P42701 662 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 CHMP4BP1P59074 171 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 PPP2CBP62714 309 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 PPP2CAP67775 309 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 POU4F1Q01851 419 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 TRIM26Q12899 539 aaPredicted RBP1.42□□□□□ -2.18
VPS35-212ENST00000640313 SMAD4Q13485 552 aaKnown RBP1.42□□□□□ -2.18
VPS35-212ENST00000640313 SNW1Q13573 536 aaKnown RBP1.42□□□□□ -2.18
VPS35-212ENST00000640313 SLC9A5Q14940 896 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 PRR31Q5SQ13 230 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 C9orf131Q5VYM1 1079 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 DIEXFQ68CQ4 756 aaKnown RBP1.42□□□□□ -2.18
VPS35-212ENST00000640313 SLFN13Q68D06 897 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 IGFL4Q6B9Z1 124 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 MCTP2Q6DN12 878 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 PKN3Q6P5Z2 889 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 RNF207Q6ZRF8 634 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 KYQ8NBH2 561 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 Q8TCH9 128 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 IGDCC4Q8TDY8 1250 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 USP33Q8TEY7 942 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 KIF2CQ99661 725 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 C11orf84Q9BUA3 381 aaPredicted RBP1.42□□□□□ -2.18
VPS35-212ENST00000640313 CDADC1Q9BWV3 514 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 C12orf49Q9H741 205 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 CHST7Q9NS84 486 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 AP5S1Q9NUS5 200 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 PRR13Q9NZ81 148 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 SERPINA10Q9UK55 444 aa1.42□□□□□ -2.18
VPS35-212ENST00000640313 DBR1Q9UK59 544 aaKnown RBP1.42□□□□□ -2.18
VPS35-212ENST00000640313 TREHO43280 583 aa1.41□□□□□ -2.18
VPS35-212ENST00000640313 UBOX5O94941 541 aa1.41□□□□□ -2.18
VPS35-212ENST00000640313 ZBTB7AO95365 584 aa1.41□□□□□ -2.18
VPS35-212ENST00000640313 CYP2C8P10632 490 aa1.41□□□□□ -2.18
VPS35-212ENST00000640313 RLBP1P12271 317 aa1.41□□□□□ -2.18
VPS35-212ENST00000640313 ITGB6P18564 788 aa1.41□□□□□ -2.18
VPS35-212ENST00000640313 TFE3P19532 575 aaPredicted RBP1.41□□□□□ -2.18
VPS35-212ENST00000640313 CTSKP43235 329 aa1.41□□□□□ -2.18
VPS35-212ENST00000640313 LIG3P49916 1009 aa1.41□□□□□ -2.18
VPS35-212ENST00000640313 RAD51AP2Q09MP3 1159 aa1.41□□□□□ -2.18
VPS35-212ENST00000640313 PRKD1Q15139 912 aaPredicted RBP1.41□□□□□ -2.18
VPS35-212ENST00000640313 CCDC142Q17RM4 750 aa1.41□□□□□ -2.18
VPS35-212ENST00000640313 HS1BP3Q53T59 392 aa1.41□□□□□ -2.18
VPS35-212ENST00000640313 RTP2Q5QGT7 225 aa1.41□□□□□ -2.18
VPS35-212ENST00000640313 ALG1LQ6GMV1 187 aa1.41□□□□□ -2.18
VPS35-212ENST00000640313 B4GALNT3Q6L9W6 998 aa1.41□□□□□ -2.18
VPS35-212ENST00000640313 PCSK4Q6UW60 755 aa1.41□□□□□ -2.18
VPS35-212ENST00000640313 CYP2R1Q6VVX0 501 aa1.41□□□□□ -2.18
VPS35-212ENST00000640313 BHLHA9Q7RTU4 235 aa1.41□□□□□ -2.18
VPS35-212ENST00000640313 LDLRAD3Q86YD5 345 aa1.41□□□□□ -2.18
VPS35-212ENST00000640313 JAMLQ86YT9 394 aa1.41□□□□□ -2.18
VPS35-212ENST00000640313 TTLL6Q8N841 843 aa1.41□□□□□ -2.18
VPS35-212ENST00000640313 JARID2Q92833 1246 aaPredicted RBP1.41□□□□□ -2.18
VPS35-212ENST00000640313 MBD6Q96DN6 1003 aa1.41□□□□□ -2.18
VPS35-212ENST00000640313 DDX11Q96FC9 970 aa1.41□□□□□ -2.18
VPS35-212ENST00000640313 FRMD6Q96NE9 622 aa1.41□□□□□ -2.18
VPS35-212ENST00000640313 GORASP1Q9BQQ3 440 aa1.41□□□□□ -2.18
VPS35-212ENST00000640313 SRRTQ9BXP5 876 aaKnown RBP1.41□□□□□ -2.18
VPS35-212ENST00000640313 REV1Q9UBZ9 1251 aa1.41□□□□□ -2.18
VPS35-212ENST00000640313 MINPP1Q9UNW1 487 aa1.41□□□□□ -2.18
VPS35-212ENST00000640313 TTF2Q9UNY4 1162 aaKnown RBP1.41□□□□□ -2.18
VPS35-212ENST00000640313 SPG7Q9UQ90 795 aa1.41□□□□□ -2.18
VPS35-212ENST00000640313 FAM221AA4D161 298 aa1.4□□□□□ -2.19
VPS35-212ENST00000640313 DDX3XO00571 662 aaKnown RBP eCLIP1.4□□□□□ -2.194e-9■■■■■ 38.1
VPS35-212ENST00000640313 PLSCR1O15162 318 aa1.4□□□□□ -2.19
VPS35-212ENST00000640313 DNAJA2O60884 412 aa1.4□□□□□ -2.19
VPS35-212ENST00000640313 HTR3BO95264 441 aa1.4□□□□□ -2.19
VPS35-212ENST00000640313 C8BP07358 591 aa1.4□□□□□ -2.19
VPS35-212ENST00000640313 PTH1RQ03431 593 aa1.4□□□□□ -2.19
VPS35-212ENST00000640313 CCDC85BQ15834 202 aaPredicted RBP1.4□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms