RNA–Protein interactions for RNA: ENST00000601444.2

SSBP4-210, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 427 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-210ENST00000601444 RUFY3Q7L099 469 aa23.34■■□□□ 1.33
SSBP4-210ENST00000601444 MICU3Q86XE3 530 aa23.34■■□□□ 1.33
SSBP4-210ENST00000601444 HOMER1Q86YM7 354 aa23.34■■□□□ 1.33
SSBP4-210ENST00000601444 PIBF1Q8WXW3 757 aa23.34■■□□□ 1.33
SSBP4-210ENST00000601444 FGD4Q96M96 766 aa23.34■■□□□ 1.33
SSBP4-210ENST00000601444 PURBQ96QR8 312 aaKnown RBP23.34■■□□□ 1.33
SSBP4-210ENST00000601444 PIGSQ96S52 555 aa23.34■■□□□ 1.33
SSBP4-210ENST00000601444 ZNFX1Q9P2E3 1918 aaKnown RBP23.33■■□□□ 1.33
SSBP4-210ENST00000601444 KLF18A0A0U1RQI7 1052 aa23.33■■□□□ 1.33
SSBP4-210ENST00000601444 FGD1P98174 961 aa23.33■■□□□ 1.33
SSBP4-210ENST00000601444 APOBRQ0VD83 1088 aa23.33■■□□□ 1.33
SSBP4-210ENST00000601444 PRAMEF19Q5SWL8 479 aa23.33■■□□□ 1.33
SSBP4-210ENST00000601444 MFSD14CQ5VZR4 134 aa23.33■■□□□ 1.33
SSBP4-210ENST00000601444 NSMFQ6X4W1 530 aa23.33■■□□□ 1.33
SSBP4-210ENST00000601444 SRBD1Q8N5C6 995 aaKnown RBP23.33■■□□□ 1.33
SSBP4-210ENST00000601444 FANCBQ8NB91 859 aa23.33■■□□□ 1.33
SSBP4-210ENST00000601444 BRF1Q92994 677 aa23.33■■□□□ 1.33
SSBP4-210ENST00000601444 UPF3BQ9BZI7 483 aaKnown RBP23.33■■□□□ 1.33
SSBP4-210ENST00000601444 DIS3Q9Y2L1 958 aaKnown RBP23.33■■□□□ 1.33
SSBP4-210ENST00000601444 RPTORQ8N122 1335 aa23.33■■□□□ 1.32
SSBP4-210ENST00000601444 ZBTB5O15062 677 aa23.32■■□□□ 1.32
SSBP4-210ENST00000601444 CALM1P0DP23 149 aa23.32■■□□□ 1.32
SSBP4-210ENST00000601444 CALM2P0DP24 149 aa23.32■■□□□ 1.32
SSBP4-210ENST00000601444 CALM3P0DP25 149 aa23.32■■□□□ 1.32
SSBP4-210ENST00000601444 KIF5BP33176 963 aa23.32■■□□□ 1.32
SSBP4-210ENST00000601444 SYNE3Q6ZMZ3 975 aa23.32■■□□□ 1.32
SSBP4-210ENST00000601444 FBXO11Q86XK2 927 aa23.32■■□□□ 1.32
SSBP4-210ENST00000601444 TRPV1Q8NER1 839 aa23.32■■□□□ 1.32
SSBP4-210ENST00000601444 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.32■■□□□ 1.325e-6■■■□□ 15.8
SSBP4-210ENST00000601444 HMX1Q9NP08 348 aaPredicted RBP23.32■■□□□ 1.32
SSBP4-210ENST00000601444 PAK6Q9NQU5 681 aaPredicted RBP23.32■■□□□ 1.32
SSBP4-210ENST00000601444 CYP39A1Q9NYL5 469 aa23.32■■□□□ 1.32
SSBP4-210ENST00000601444 POTEB2H3BUK9 544 aa23.31■■□□□ 1.32
SSBP4-210ENST00000601444 BAATQ14032 418 aaPredicted RBP23.31■■□□□ 1.32
SSBP4-210ENST00000601444 CCDC82Q8N4S0 544 aa23.31■■□□□ 1.32
SSBP4-210ENST00000601444 FAM133AQ8N9E0 248 aa23.31■■□□□ 1.32
SSBP4-210ENST00000601444 TBC1D5Q92609 795 aa23.31■■□□□ 1.32
SSBP4-210ENST00000601444 DEFB118Q96PH6 123 aa23.31■■□□□ 1.32
SSBP4-210ENST00000601444 TINF2Q9BSI4 451 aa23.31■■□□□ 1.32
SSBP4-210ENST00000601444 TM6SF1Q9BZW5 370 aa23.31■■□□□ 1.32
SSBP4-210ENST00000601444 NAP1L2Q9ULW6 460 aaPredicted RBP23.31■■□□□ 1.32
SSBP4-210ENST00000601444 CYP46A1Q9Y6A2 500 aa23.31■■□□□ 1.32
SSBP4-210ENST00000601444 SOWAHBA6NEL2 793 aa23.3■■□□□ 1.32
SSBP4-210ENST00000601444 ZBTB43O43298 467 aa23.3■■□□□ 1.32
SSBP4-210ENST00000601444 GJB1P08034 283 aa23.3■■□□□ 1.32
SSBP4-210ENST00000601444 SLC30A10Q6XR72 485 aa23.3■■□□□ 1.32
SSBP4-210ENST00000601444 FBXL16Q8N461 479 aa23.3■■□□□ 1.32
SSBP4-210ENST00000601444 LARP6Q9BRS8 491 aaKnown RBP23.3■■□□□ 1.32
SSBP4-210ENST00000601444 AGXT2Q9BYV1 514 aa23.3■■□□□ 1.32
SSBP4-210ENST00000601444 PNMA2Q9UL42 364 aa23.3■■□□□ 1.32
SSBP4-210ENST00000601444 DDX49Q9Y6V7 483 aaKnown RBP23.3■■□□□ 1.32
SSBP4-210ENST00000601444 ASTN1O14525 1302 aa23.3■■□□□ 1.32
SSBP4-210ENST00000601444 PTPDC1A2A3K4 754 aa23.29■■□□□ 1.32
SSBP4-210ENST00000601444 TOB2Q14106 344 aaPredicted RBP23.29■■□□□ 1.32
SSBP4-210ENST00000601444 TMTC3Q6ZXV5 915 aa23.29■■□□□ 1.32
SSBP4-210ENST00000601444 U2AF1L4Q8WU68 220 aaKnown RBP23.29■■□□□ 1.32
SSBP4-210ENST00000601444 SHISA4Q96DD7 197 aa23.29■■□□□ 1.32
SSBP4-210ENST00000601444 SPZ1Q9BXG8 430 aa23.29■■□□□ 1.32
SSBP4-210ENST00000601444 AMNQ9BXJ7 453 aa23.29■■□□□ 1.32
SSBP4-210ENST00000601444 FAM217BQ9NTX9 383 aaPredicted RBP23.29■■□□□ 1.32
SSBP4-210ENST00000601444 PFASO15067 1338 aa23.29■■□□□ 1.32
SSBP4-210ENST00000601444 ABCB11O95342 1321 aa23.29■■□□□ 1.32
SSBP4-210ENST00000601444 PNMA6FA0A0J9YX94 578 aa23.28■■□□□ 1.32
SSBP4-210ENST00000601444 hCG_1642624A0A1W2PR95 340 aa23.28■■□□□ 1.32
SSBP4-210ENST00000601444 CYBAP13498 195 aa23.28■■□□□ 1.32
SSBP4-210ENST00000601444 CALML3P27482 149 aa23.28■■□□□ 1.32
SSBP4-210ENST00000601444 CDC27P30260 824 aa23.28■■□□□ 1.32
SSBP4-210ENST00000601444 GJA8P48165 433 aa23.28■■□□□ 1.32
SSBP4-210ENST00000601444 GNAQP50148 359 aa23.28■■□□□ 1.32
SSBP4-210ENST00000601444 LZTS2Q9BRK4 669 aa23.28■■□□□ 1.32
SSBP4-210ENST00000601444 PCDHA1Q9Y5I3 950 aa23.28■■□□□ 1.32
SSBP4-210ENST00000601444 PLXNA1Q9UIW2 1896 aa23.28■■□□□ 1.32
SSBP4-210ENST00000601444 GOLGA8AA7E2F4 631 aa23.27■■□□□ 1.32
SSBP4-210ENST00000601444 GOLGA8BA8MQT2 603 aa23.27■■□□□ 1.32
SSBP4-210ENST00000601444 OPLAHO14841 1288 aa23.27■■□□□ 1.32
SSBP4-210ENST00000601444 SGPL1O95470 568 aa23.27■■□□□ 1.32
SSBP4-210ENST00000601444 SNAI1O95863 264 aaPredicted RBP23.27■■□□□ 1.32
SSBP4-210ENST00000601444 SMARCA1P28370 1054 aa23.27■■□□□ 1.32
SSBP4-210ENST00000601444 CNGA1P29973 690 aa23.27■■□□□ 1.32
SSBP4-210ENST00000601444 ANAPC15P60006 121 aa23.27■■□□□ 1.32
SSBP4-210ENST00000601444 RPS6P62753 249 aaKnown RBP23.27■■□□□ 1.32
SSBP4-210ENST00000601444 RTN1Q16799 776 aa23.27■■□□□ 1.32
SSBP4-210ENST00000601444 MAMDC4Q6UXC1 1216 aa23.27■■□□□ 1.32
SSBP4-210ENST00000601444 RNF207Q6ZRF8 634 aa23.27■■□□□ 1.32
SSBP4-210ENST00000601444 ZNF467Q7Z7K2 595 aaPredicted RBP23.27■■□□□ 1.32
SSBP4-210ENST00000601444 EIF5BO60841 1220 aaKnown RBP23.26■■□□□ 1.31
SSBP4-210ENST00000601444 RGS19P49795 217 aa23.26■■□□□ 1.31
SSBP4-210ENST00000601444 RRP36Q96EU6 259 aaKnown RBP23.26■■□□□ 1.31
SSBP4-210ENST00000601444 PDRG1Q9NUG6 133 aa23.26■■□□□ 1.31
SSBP4-210ENST00000601444 MRPL11Q9Y3B7 192 aaKnown RBP23.26■■□□□ 1.31
SSBP4-210ENST00000601444 ADD1P35611 737 aaKnown RBP23.25■■□□□ 1.31
SSBP4-210ENST00000601444 FUT2Q10981 343 aa23.25■■□□□ 1.31
SSBP4-210ENST00000601444 ANO1Q5XXA6 986 aa23.25■■□□□ 1.31
SSBP4-210ENST00000601444 LHX8Q68G74 356 aa23.25■■□□□ 1.31
SSBP4-210ENST00000601444 IL17RAQ96F46 866 aa23.25■■□□□ 1.31
SSBP4-210ENST00000601444 RBM28Q9NW13 759 aaKnown RBP23.25■■□□□ 1.31
SSBP4-210ENST00000601444 RBBP6Q7Z6E9 1792 aaKnown RBP23.24■■□□□ 1.31
SSBP4-210ENST00000601444 BAZ2BQ9UIF8 2168 aaKnown RBP23.24■■□□□ 1.31
SSBP4-210ENST00000601444 TFRCP02786 760 aaKnown RBP23.24■■□□□ 1.31
SSBP4-210ENST00000601444 ZNF865P0CJ78 1059 aaPredicted RBP23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms