RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 GOLGA6L10A6NI86 522 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 TMEM232C9JQI7 657 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 RGL2O15211 777 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 PRPF3O43395 683 aaKnown RBP11.55□□□□□ -0.56
LIG1-220ENST00000601091 PDE4DQ08499 809 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 MORC3Q14149 939 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 SMC1AQ14683 1233 aaKnown RBP11.55□□□□□ -0.56
LIG1-220ENST00000601091 BRD3Q15059 726 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 ZNF804AQ7Z570 1209 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 ZSCAN29Q8IWY8 852 aaPredicted RBP11.55□□□□□ -0.56
LIG1-220ENST00000601091 BLIDQ8IZY5 108 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 FBXL16Q8N461 479 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 ZBTB10Q96DT7 871 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 EPSTI1Q96J88 318 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 MPP4Q96JB8 637 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 DNAI2Q9GZS0 605 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 VPS18Q9P253 973 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 KLF15Q9UIH9 416 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 COL15A1P39059 1388 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 KCNJ18B7U540 433 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 H7C1D1 291 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 CYP19A1P11511 503 aaPredicted RBP11.55□□□□□ -0.56
LIG1-220ENST00000601091 MATR3P43243 847 aaKnown RBP eCLIP11.55□□□□□ -0.561e-9■■■■■ 38.3
LIG1-220ENST00000601091 TRAPPC10P48553 1259 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 RPS6KA3P51812 740 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 GSCP56915 257 aaPredicted RBP11.55□□□□□ -0.56
LIG1-220ENST00000601091 PPARDQ03181 441 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 KCNJ12Q14500 433 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 ENOX2Q16206 610 aaKnown RBP11.55□□□□□ -0.56
LIG1-220ENST00000601091 PACS2Q86VP3 889 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 CTNNBL1Q8WYA6 563 aaPredicted RBP11.55□□□□□ -0.56
LIG1-220ENST00000601091 N4BP2L2Q92802 583 aaPredicted RBP11.55□□□□□ -0.56
LIG1-220ENST00000601091 CAPZA3Q96KX2 299 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 FAM81BQ96LP2 452 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 CASP14P31944 242 aa11.54□□□□□ -0.56
LIG1-220ENST00000601091 NYAP1Q6ZVC0 841 aa11.54□□□□□ -0.56
LIG1-220ENST00000601091 METTL16Q86W50 562 aaKnown RBP11.54□□□□□ -0.56
LIG1-220ENST00000601091 NGLY1Q96IV0 654 aa11.54□□□□□ -0.56
LIG1-220ENST00000601091 NOC4LQ9BVI4 516 aaKnown RBP11.54□□□□□ -0.56
LIG1-220ENST00000601091 NUP58Q9BVL2 599 aa11.54□□□□□ -0.56
LIG1-220ENST00000601091 PLEKHA4Q9H4M7 779 aa11.54□□□□□ -0.56
LIG1-220ENST00000601091 LCMT1Q9UIC8 334 aa11.54□□□□□ -0.56
LIG1-220ENST00000601091 MEGF6O75095 1541 aa11.54□□□□□ -0.56
LIG1-220ENST00000601091 ATP8B1O43520 1251 aa11.54□□□□□ -0.56
LIG1-220ENST00000601091 SNUPNO95149 360 aaKnown RBP11.54□□□□□ -0.56
LIG1-220ENST00000601091 PLCG2P16885 1265 aa11.54□□□□□ -0.56
LIG1-220ENST00000601091 RCAN1P53805 252 aa11.54□□□□□ -0.56
LIG1-220ENST00000601091 RBL2Q08999 1139 aa11.54□□□□□ -0.56
LIG1-220ENST00000601091 KRT79Q5XKE5 535 aa11.54□□□□□ -0.56
LIG1-220ENST00000601091 SMYD4Q8IYR2 804 aaPredicted RBP11.54□□□□□ -0.56
LIG1-220ENST00000601091 WDR66Q8TBY9 1149 aa11.54□□□□□ -0.56
LIG1-220ENST00000601091 MKL1Q969V6 931 aa11.54□□□□□ -0.56
LIG1-220ENST00000601091 CCDC43Q96MW1 224 aaKnown RBP11.54□□□□□ -0.56
LIG1-220ENST00000601091 ZNF446Q9NWS9 450 aa11.54□□□□□ -0.56
LIG1-220ENST00000601091 PCDHGA4Q9Y5G9 962 aa11.54□□□□□ -0.56
LIG1-220ENST00000601091 PARP1P09874 1014 aaKnown RBP11.54□□□□□ -0.56
LIG1-220ENST00000601091 OAS2P29728 719 aaKnown RBP11.54□□□□□ -0.56
LIG1-220ENST00000601091 DNA2P51530 1060 aa11.54□□□□□ -0.56
LIG1-220ENST00000601091 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.54□□□□□ -0.56
LIG1-220ENST00000601091 ATP8A2Q9NTI2 1148 aa11.54□□□□□ -0.56
LIG1-220ENST00000601091 N6AMT1Q9Y5N5 214 aa11.54□□□□□ -0.56
LIG1-220ENST00000601091 BDNFP23560 247 aa11.53□□□□□ -0.56
LIG1-220ENST00000601091 DYNLL1P63167 89 aaKnown RBP11.53□□□□□ -0.56
LIG1-220ENST00000601091 NKX1-1Q15270 411 aaPredicted RBP11.53□□□□□ -0.56
LIG1-220ENST00000601091 DPF2Q92785 391 aa11.53□□□□□ -0.56
LIG1-220ENST00000601091 PAGE5Q96GU1 130 aa11.53□□□□□ -0.56
LIG1-220ENST00000601091 TCEAL9Q9UHQ7 104 aa11.53□□□□□ -0.56
LIG1-220ENST00000601091 CDC23Q9UJX2 597 aa11.53□□□□□ -0.56
LIG1-220ENST00000601091 MYO6Q9UM54 1294 aa11.53□□□□□ -0.56
LIG1-220ENST00000601091 RTCBQ9Y3I0 505 aaKnown RBP11.53□□□□□ -0.56
LIG1-220ENST00000601091 PNMA6AP0CW24 399 aaPredicted RBP11.53□□□□□ -0.56
LIG1-220ENST00000601091 LONP1P36776 959 aaKnown RBP11.53□□□□□ -0.56
LIG1-220ENST00000601091 SV2BQ7L1I2 683 aa11.53□□□□□ -0.56
LIG1-220ENST00000601091 PNMA1Q8ND90 353 aa11.53□□□□□ -0.56
LIG1-220ENST00000601091 MIEF2Q96C03 454 aa11.53□□□□□ -0.56
LIG1-220ENST00000601091 PANX2Q96RD6 677 aa11.53□□□□□ -0.56
LIG1-220ENST00000601091 SOS2Q07890 1332 aaPredicted RBP11.53□□□□□ -0.56
LIG1-220ENST00000601091 FOXN1O15353 648 aa11.53□□□□□ -0.56
LIG1-220ENST00000601091 RPN1P04843 607 aaKnown RBP11.53□□□□□ -0.56
LIG1-220ENST00000601091 FAM200BP0CF97 657 aa11.53□□□□□ -0.56
LIG1-220ENST00000601091 IL4RP24394 825 aa11.53□□□□□ -0.56
LIG1-220ENST00000601091 ZNF76P36508 570 aa11.53□□□□□ -0.56
LIG1-220ENST00000601091 GDAP1L1Q96MZ0 367 aa11.53□□□□□ -0.56
LIG1-220ENST00000601091 PIK3C2AO00443 1686 aa11.53□□□□□ -0.56
LIG1-220ENST00000601091 CCNT1O60563 726 aaKnown RBP11.52□□□□□ -0.56
LIG1-220ENST00000601091 CSPG5O95196 566 aa11.52□□□□□ -0.56
LIG1-220ENST00000601091 IVLP07476 585 aa11.52□□□□□ -0.56
LIG1-220ENST00000601091 GUCY1A2P33402 732 aa11.52□□□□□ -0.56
LIG1-220ENST00000601091 COPB1P53618 953 aaKnown RBP11.52□□□□□ -0.56
LIG1-220ENST00000601091 NONOQ15233 471 aaKnown RBP eCLIP11.52□□□□□ -0.56
LIG1-220ENST00000601091 FXNQ16595 210 aa11.52□□□□□ -0.56
LIG1-220ENST00000601091 CNNM4Q6P4Q7 775 aa11.52□□□□□ -0.56
LIG1-220ENST00000601091 SEPT14Q6ZU15 432 aa11.52□□□□□ -0.56
LIG1-220ENST00000601091 SRGAP1Q7Z6B7 1085 aa11.52□□□□□ -0.56
LIG1-220ENST00000601091 OXER1Q8TDS5 423 aa11.52□□□□□ -0.56
LIG1-220ENST00000601091 WHAMMQ8TF30 809 aa11.52□□□□□ -0.56
LIG1-220ENST00000601091 RSPH9Q9H1X1 276 aaPredicted RBP11.52□□□□□ -0.56
LIG1-220ENST00000601091 DMPKQ09013 629 aa11.52□□□□□ -0.57
LIG1-220ENST00000601091 WHAMMP3Q1A5X7 153 aa11.52□□□□□ -0.57
LIG1-220ENST00000601091 FAAH2Q6GMR7 532 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms