RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 PPP1R11O60927 126 aaPredicted RBP17.38■□□□□ 0.37
TRIM28-207ENST00000597136 PGK2P07205 417 aa17.38■□□□□ 0.37
TRIM28-207ENST00000597136 CALM1P0DP23 149 aa17.38■□□□□ 0.37
TRIM28-207ENST00000597136 CALM2P0DP24 149 aa17.38■□□□□ 0.37
TRIM28-207ENST00000597136 CALM3P0DP25 149 aa17.38■□□□□ 0.37
TRIM28-207ENST00000597136 ADORA2AP29274 412 aa17.38■□□□□ 0.37
TRIM28-207ENST00000597136 PRMT2P55345 433 aa17.38■□□□□ 0.37
TRIM28-207ENST00000597136 CUL4AQ13619 759 aa17.38■□□□□ 0.37
TRIM28-207ENST00000597136 GRB14Q14449 540 aa17.38■□□□□ 0.37
TRIM28-207ENST00000597136 USH1GQ495M9 461 aa17.38■□□□□ 0.37
TRIM28-207ENST00000597136 TNS4Q8IZW8 715 aa17.38■□□□□ 0.37
TRIM28-207ENST00000597136 NPLOC4Q8TAT6 608 aa17.38■□□□□ 0.37
TRIM28-207ENST00000597136 SH3TC2Q8TF17 1288 aa17.38■□□□□ 0.37
TRIM28-207ENST00000597136 GTF3C6Q969F1 213 aa17.38■□□□□ 0.37
TRIM28-207ENST00000597136 RNF146Q9NTX7 359 aa17.38■□□□□ 0.37
TRIM28-207ENST00000597136 MYH7BA7E2Y1 1941 aa17.38■□□□□ 0.37
TRIM28-207ENST00000597136 hCG_1642624A0A1W2PR95 340 aa17.37■□□□□ 0.37
TRIM28-207ENST00000597136 GOLGA8AA7E2F4 631 aa17.37■□□□□ 0.37
TRIM28-207ENST00000597136 STRNO43815 780 aa17.37■□□□□ 0.37
TRIM28-207ENST00000597136 ADCY3O60266 1144 aa17.37■□□□□ 0.37
TRIM28-207ENST00000597136 FCER1AP12319 257 aa17.37■□□□□ 0.37
TRIM28-207ENST00000597136 KIF5BP33176 963 aa17.37■□□□□ 0.37
TRIM28-207ENST00000597136 ADD1P35611 737 aaKnown RBP17.37■□□□□ 0.37
TRIM28-207ENST00000597136 METAP2P50579 478 aaKnown RBP eCLIP17.37■□□□□ 0.372e-8■□□□□ 10
TRIM28-207ENST00000597136 CCT2P78371 535 aaKnown RBP17.37■□□□□ 0.37
TRIM28-207ENST00000597136 ST3GAL1Q11201 340 aa17.37■□□□□ 0.37
TRIM28-207ENST00000597136 SCRN1Q12765 414 aa17.37■□□□□ 0.37
TRIM28-207ENST00000597136 MAP2K5Q13163 448 aa17.37■□□□□ 0.37
TRIM28-207ENST00000597136 CCL14Q16627 93 aa17.37■□□□□ 0.37
TRIM28-207ENST00000597136 HOMER1Q86YM7 354 aa17.37■□□□□ 0.37
TRIM28-207ENST00000597136 IPO9Q96P70 1041 aaKnown RBP17.37■□□□□ 0.37
TRIM28-207ENST00000597136 MMP19Q99542 508 aa17.37■□□□□ 0.37
TRIM28-207ENST00000597136 NCOA5Q9HCD5 579 aaKnown RBP17.37■□□□□ 0.37
TRIM28-207ENST00000597136 NID2Q14112 1375 aa17.37■□□□□ 0.37
TRIM28-207ENST00000597136 IRF5Q13568 498 aa17.36■□□□□ 0.37
TRIM28-207ENST00000597136 RTN1Q16799 776 aa17.36■□□□□ 0.37
TRIM28-207ENST00000597136 TMTC3Q6ZXV5 915 aa17.36■□□□□ 0.37
TRIM28-207ENST00000597136 CCDC83Q8IWF9 413 aa17.36■□□□□ 0.37
TRIM28-207ENST00000597136 CHST13Q8NET6 341 aa17.36■□□□□ 0.37
TRIM28-207ENST00000597136 FLRT1Q9NZU1 646 aa17.36■□□□□ 0.37
TRIM28-207ENST00000597136 FRMPD3Q5JV73 1810 aa17.36■□□□□ 0.37
TRIM28-207ENST00000597136 NFIBO00712 420 aa17.36■□□□□ 0.37
TRIM28-207ENST00000597136 FUT2Q10981 343 aa17.36■□□□□ 0.37
TRIM28-207ENST00000597136 TRIM32Q13049 653 aa17.36■□□□□ 0.37
TRIM28-207ENST00000597136 PPP2R5BQ15173 497 aa17.36■□□□□ 0.37
TRIM28-207ENST00000597136 DPP9Q86TI2 863 aa17.36■□□□□ 0.37
TRIM28-207ENST00000597136 FBXO11Q86XK2 927 aa17.36■□□□□ 0.37
TRIM28-207ENST00000597136 CLEC4DQ8WXI8 215 aa17.36■□□□□ 0.37
TRIM28-207ENST00000597136 TBC1D5Q92609 795 aa17.36■□□□□ 0.37
TRIM28-207ENST00000597136 SPZ1Q9BXG8 430 aa17.36■□□□□ 0.37
TRIM28-207ENST00000597136 ZBTB5O15062 677 aa17.35■□□□□ 0.37
TRIM28-207ENST00000597136 DTNBO60941 627 aa17.35■□□□□ 0.37
TRIM28-207ENST00000597136 MYCP01106 439 aaPredicted RBP17.35■□□□□ 0.37
TRIM28-207ENST00000597136 GRK4P32298 578 aa17.35■□□□□ 0.37
TRIM28-207ENST00000597136 COPB2P35606 906 aa17.35■□□□□ 0.37
TRIM28-207ENST00000597136 RGS2P41220 211 aa17.35■□□□□ 0.37
TRIM28-207ENST00000597136 KCTD2Q14681 263 aa17.35■□□□□ 0.37
TRIM28-207ENST00000597136 TKFCQ3LXA3 575 aa17.35■□□□□ 0.37
TRIM28-207ENST00000597136 SOCS4Q8WXH5 440 aa17.35■□□□□ 0.37
TRIM28-207ENST00000597136 TRIB2Q92519 343 aa17.35■□□□□ 0.37
TRIM28-207ENST00000597136 ACAD9Q9H845 621 aa17.35■□□□□ 0.37
TRIM28-207ENST00000597136 A1CFQ9NQ94 594 aaKnown RBP17.35■□□□□ 0.37
TRIM28-207ENST00000597136 PPFIA3O75145 1194 aa17.34■□□□□ 0.37
TRIM28-207ENST00000597136 XRCC5P13010 732 aaKnown RBP17.34■□□□□ 0.37
TRIM28-207ENST00000597136 SMARCA1P28370 1054 aa17.34■□□□□ 0.37
TRIM28-207ENST00000597136 GNAQP50148 359 aa17.34■□□□□ 0.37
TRIM28-207ENST00000597136 CNTN2Q02246 1040 aa17.34■□□□□ 0.37
TRIM28-207ENST00000597136 SLC9C1Q4G0N8 1177 aa17.34■□□□□ 0.37
TRIM28-207ENST00000597136 ABRAQ8N0Z2 381 aa17.34■□□□□ 0.37
TRIM28-207ENST00000597136 ANKRD35Q8N283 1001 aa17.34■□□□□ 0.37
TRIM28-207ENST00000597136 DDX11Q96FC9 970 aa17.34■□□□□ 0.37
TRIM28-207ENST00000597136 ABHD8Q96I13 439 aa17.34■□□□□ 0.37
TRIM28-207ENST00000597136 PURBQ96QR8 312 aaKnown RBP17.34■□□□□ 0.37
TRIM28-207ENST00000597136 LZTS2Q9BRK4 669 aa17.34■□□□□ 0.37
TRIM28-207ENST00000597136 DAXXQ9UER7 740 aaPredicted RBP17.34■□□□□ 0.37
TRIM28-207ENST00000597136 FBXO40Q9UH90 709 aa17.34■□□□□ 0.37
TRIM28-207ENST00000597136 CNTNAP5Q8WYK1 1306 aa17.33■□□□□ 0.37
TRIM28-207ENST00000597136 DNAJC25-GNG10A0A024R161 153 aa17.33■□□□□ 0.37
TRIM28-207ENST00000597136 PNMA6FA0A0J9YX94 578 aa17.33■□□□□ 0.37
TRIM28-207ENST00000597136 CCDC196A0A1B0GTZ2 297 aa17.33■□□□□ 0.37
TRIM28-207ENST00000597136 HOXC6P09630 235 aa17.33■□□□□ 0.37
TRIM28-207ENST00000597136 ZNF792Q3KQV3 632 aa17.33■□□□□ 0.37
TRIM28-207ENST00000597136 NSMFQ6X4W1 530 aa17.33■□□□□ 0.37
TRIM28-207ENST00000597136 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.33■□□□□ 0.371e-7■■□□□ 12.1
TRIM28-207ENST00000597136 INTS4Q96HW7 963 aaKnown RBP17.33■□□□□ 0.37
TRIM28-207ENST00000597136 AMNQ9BXJ7 453 aa17.33■□□□□ 0.37
TRIM28-207ENST00000597136 RBM28Q9NW13 759 aaKnown RBP17.33■□□□□ 0.37
TRIM28-207ENST00000597136 OPLAHO14841 1288 aa17.32■□□□□ 0.36
TRIM28-207ENST00000597136 CTDNEP1O95476 244 aa17.32■□□□□ 0.36
TRIM28-207ENST00000597136 HSP90AA1P07900 732 aaKnown RBP17.32■□□□□ 0.36
TRIM28-207ENST00000597136 BAATQ14032 418 aaPredicted RBP17.32■□□□□ 0.36
TRIM28-207ENST00000597136 MTFR1Q15390 333 aa17.32■□□□□ 0.36
TRIM28-207ENST00000597136 NTRK3Q16288 839 aa17.32■□□□□ 0.36
TRIM28-207ENST00000597136 PXYLP1Q8TE99 480 aa17.32■□□□□ 0.36
TRIM28-207ENST00000597136 RRP36Q96EU6 259 aaKnown RBP17.32■□□□□ 0.36
TRIM28-207ENST00000597136 FGD4Q96M96 766 aa17.32■□□□□ 0.36
TRIM28-207ENST00000597136 APBA2Q99767 749 aa17.32■□□□□ 0.36
TRIM28-207ENST00000597136 CYP39A1Q9NYL5 469 aa17.32■□□□□ 0.36
TRIM28-207ENST00000597136 BIN2Q9UBW5 565 aaPredicted RBP17.32■□□□□ 0.36
TRIM28-207ENST00000597136 PCDHA1Q9Y5I3 950 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms