RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 BMP6P22004 513 aa14.84□□□□□ -0.03
CLK3-206ENST00000562078 RASGRP2Q7LDG7 609 aa14.84□□□□□ -0.03
CLK3-206ENST00000562078 CCDC26Q8TAB7 109 aa14.84□□□□□ -0.03
CLK3-206ENST00000562078 ITFG2Q969R8 447 aa14.84□□□□□ -0.03
CLK3-206ENST00000562078 AIFM3Q96NN9 605 aa14.84□□□□□ -0.03
CLK3-206ENST00000562078 MMS19Q96T76 1030 aa14.84□□□□□ -0.03
CLK3-206ENST00000562078 SH3GL3Q99963 347 aa14.84□□□□□ -0.03
CLK3-206ENST00000562078 HDAC6Q9UBN7 1215 aa14.84□□□□□ -0.03
CLK3-206ENST00000562078 DUOX1Q9NRD9 1551 aa14.84□□□□□ -0.03
CLK3-206ENST00000562078 GOLGA8AA7E2F4 631 aa14.84□□□□□ -0.03
CLK3-206ENST00000562078 MARCKSP29966 332 aaPredicted RBP14.84□□□□□ -0.03
CLK3-206ENST00000562078 SGMS1Q86VZ5 419 aa14.84□□□□□ -0.03
CLK3-206ENST00000562078 PARP9Q8IXQ6 854 aa14.84□□□□□ -0.03
CLK3-206ENST00000562078 TRMT44Q8IYL2 757 aaKnown RBP14.84□□□□□ -0.03
CLK3-206ENST00000562078 PHKBQ93100 1093 aa14.84□□□□□ -0.03
CLK3-206ENST00000562078 PANX2Q96RD6 677 aa14.84□□□□□ -0.03
CLK3-206ENST00000562078 ZKSCAN3Q9BRR0 538 aa14.84□□□□□ -0.03
CLK3-206ENST00000562078 KRT23Q9C075 422 aa14.84□□□□□ -0.03
CLK3-206ENST00000562078 EZRP15311 586 aaKnown RBP14.83□□□□□ -0.04
CLK3-206ENST00000562078 SYKP43405 635 aa14.83□□□□□ -0.04
CLK3-206ENST00000562078 ATP1A2P50993 1020 aa14.83□□□□□ -0.04
CLK3-206ENST00000562078 RBM5P52756 815 aaKnown RBP eCLIP14.83□□□□□ -0.04
CLK3-206ENST00000562078 NAP1L1P55209 391 aaKnown RBP14.83□□□□□ -0.04
CLK3-206ENST00000562078 RBL2Q08999 1139 aa14.83□□□□□ -0.04
CLK3-206ENST00000562078 FBXO33Q7Z6M2 555 aa14.83□□□□□ -0.04
CLK3-206ENST00000562078 SLC51AQ86UW1 340 aa14.83□□□□□ -0.04
CLK3-206ENST00000562078 FOXP4Q8IVH2 680 aaPredicted RBP14.83□□□□□ -0.04
CLK3-206ENST00000562078 MICAL1Q8TDZ2 1067 aa14.83□□□□□ -0.04
CLK3-206ENST00000562078 ZNF384Q8TF68 577 aa14.83□□□□□ -0.04
CLK3-206ENST00000562078 IRAK4Q9NWZ3 460 aa14.83□□□□□ -0.04
CLK3-206ENST00000562078 NFE2L3Q9Y4A8 694 aa14.83□□□□□ -0.04
CLK3-206ENST00000562078 COL11A2P13942 1736 aaPredicted RBP14.83□□□□□ -0.04
CLK3-206ENST00000562078 DLEC1Q9Y238 1755 aa14.83□□□□□ -0.04
CLK3-206ENST00000562078 MINDY4BA8MYZ0 360 aa14.83□□□□□ -0.04
CLK3-206ENST00000562078 ENC1O14682 589 aa14.83□□□□□ -0.04
CLK3-206ENST00000562078 CAND2O75155 1236 aa14.83□□□□□ -0.04
CLK3-206ENST00000562078 CMA1P23946 247 aa14.83□□□□□ -0.04
CLK3-206ENST00000562078 GBP2P32456 591 aaPredicted RBP14.83□□□□□ -0.04
CLK3-206ENST00000562078 DYNLL1P63167 89 aaKnown RBP14.83□□□□□ -0.04
CLK3-206ENST00000562078 FMR1Q06787 632 aaKnown RBP eCLIP14.83□□□□□ -0.04
CLK3-206ENST00000562078 PPARAQ07869 468 aa14.83□□□□□ -0.04
CLK3-206ENST00000562078 LONRF3Q496Y0 759 aa14.83□□□□□ -0.04
CLK3-206ENST00000562078 ZC3H12AQ5D1E8 599 aaKnown RBP14.83□□□□□ -0.04
CLK3-206ENST00000562078 NAA35Q5VZE5 725 aa14.83□□□□□ -0.04
CLK3-206ENST00000562078 ARL8AQ96BM9 186 aa14.83□□□□□ -0.04
CLK3-206ENST00000562078 ZBTB10Q96DT7 871 aa14.83□□□□□ -0.04
CLK3-206ENST00000562078 SPDL1Q96EA4 605 aa14.83□□□□□ -0.04
CLK3-206ENST00000562078 RRP36Q96EU6 259 aaKnown RBP14.83□□□□□ -0.04
CLK3-206ENST00000562078 RIOK1Q9BRS2 568 aaKnown RBP14.83□□□□□ -0.04
CLK3-206ENST00000562078 SMIM22K7EJ46 135 aa14.82□□□□□ -0.04
CLK3-206ENST00000562078 TEX33O43247 280 aa14.82□□□□□ -0.04
CLK3-206ENST00000562078 SRGAP2O75044 1071 aa14.82□□□□□ -0.04
CLK3-206ENST00000562078 CDKL5O76039 1030 aa14.82□□□□□ -0.04
CLK3-206ENST00000562078 IFT88Q13099 833 aa14.82□□□□□ -0.04
CLK3-206ENST00000562078 SNX1Q13596 522 aa14.82□□□□□ -0.04
CLK3-206ENST00000562078 TTMPQ5BVD1 217 aa14.82□□□□□ -0.04
CLK3-206ENST00000562078 CYB5D1Q6P9G0 228 aa14.82□□□□□ -0.04
CLK3-206ENST00000562078 YTHDF3Q7Z739 585 aaKnown RBP14.82□□□□□ -0.04
CLK3-206ENST00000562078 SLC12A7Q9Y666 1083 aa14.82□□□□□ -0.04
CLK3-206ENST00000562078 ENO4A6NNW6 628 aa14.82□□□□□ -0.04
CLK3-206ENST00000562078 KIF28PB7ZC32 967 aa14.82□□□□□ -0.04
CLK3-206ENST00000562078 MYO1BO43795 1136 aa14.82□□□□□ -0.04
CLK3-206ENST00000562078 MCM3P25205 808 aa14.82□□□□□ -0.04
CLK3-206ENST00000562078 HOXA10P31260 410 aaPredicted RBP14.82□□□□□ -0.04
CLK3-206ENST00000562078 LIFRP42702 1097 aa14.82□□□□□ -0.04
CLK3-206ENST00000562078 CCNI2Q6ZMN8 369 aaPredicted RBP14.82□□□□□ -0.04
CLK3-206ENST00000562078 SPATS2Q86XZ4 545 aaKnown RBP14.82□□□□□ -0.04
CLK3-206ENST00000562078 CCDC125Q86Z20 511 aa14.82□□□□□ -0.04
CLK3-206ENST00000562078 CAPZA3Q96KX2 299 aa14.82□□□□□ -0.04
CLK3-206ENST00000562078 ALG1Q9BT22 464 aa14.82□□□□□ -0.04
CLK3-206ENST00000562078 ATP6V0A4Q9HBG4 840 aa14.82□□□□□ -0.04
CLK3-206ENST00000562078 POLR3EQ9NVU0 708 aa14.82□□□□□ -0.04
CLK3-206ENST00000562078 TPX2Q9ULW0 747 aaKnown RBP14.82□□□□□ -0.04
CLK3-206ENST00000562078 KLRG2A4D1S0 409 aaPredicted RBP14.81□□□□□ -0.04
CLK3-206ENST00000562078 RANBP6O60518 1105 aaKnown RBP14.81□□□□□ -0.04
CLK3-206ENST00000562078 YEATS4O95619 227 aa14.81□□□□□ -0.04
CLK3-206ENST00000562078 ZNF18P17022 549 aa14.81□□□□□ -0.04
CLK3-206ENST00000562078 HIBADHP31937 336 aaKnown RBP14.81□□□□□ -0.04
CLK3-206ENST00000562078 SH2D3CQ8N5H7 860 aa14.81□□□□□ -0.04
CLK3-206ENST00000562078 CRAMP1Q96RY5 1269 aa14.81□□□□□ -0.04
CLK3-206ENST00000562078 PDGFDQ9GZP0 370 aaPredicted RBP14.81□□□□□ -0.04
CLK3-206ENST00000562078 SAMSN1Q9NSI8 373 aaKnown RBP14.81□□□□□ -0.04
CLK3-206ENST00000562078 CPSF2Q9P2I0 782 aaKnown RBP14.81□□□□□ -0.04
CLK3-206ENST00000562078 XDHP47989 1333 aa14.81□□□□□ -0.04
CLK3-206ENST00000562078 SEMA3EO15041 775 aa14.81□□□□□ -0.04
CLK3-206ENST00000562078 BBOX1O75936 387 aa14.81□□□□□ -0.04
CLK3-206ENST00000562078 SKOR1P84550 965 aa14.81□□□□□ -0.04
CLK3-206ENST00000562078 KIF23Q02241 960 aaPredicted RBP14.81□□□□□ -0.04
CLK3-206ENST00000562078 NR1I3Q14994 352 aa14.81□□□□□ -0.04
CLK3-206ENST00000562078 NTRK3Q16288 839 aa14.81□□□□□ -0.04
CLK3-206ENST00000562078 ACCSLQ4AC99 568 aa14.81□□□□□ -0.04
CLK3-206ENST00000562078 MICALCLQ6ZW33 695 aa14.81□□□□□ -0.04
CLK3-206ENST00000562078 TXNRD3Q86VQ6 643 aa14.81□□□□□ -0.04
CLK3-206ENST00000562078 METTL16Q86W50 562 aaKnown RBP14.81□□□□□ -0.04
CLK3-206ENST00000562078 FUKQ8N0W3 1084 aa14.81□□□□□ -0.04
CLK3-206ENST00000562078 RNF41Q9H4P4 317 aaPredicted RBP14.81□□□□□ -0.04
CLK3-206ENST00000562078 FAM217BQ9NTX9 383 aaPredicted RBP14.81□□□□□ -0.04
CLK3-206ENST00000562078 JAG2Q9Y219 1238 aa14.81□□□□□ -0.04
CLK3-206ENST00000562078 PCDHA5Q9Y5H7 936 aa14.81□□□□□ -0.04
CLK3-206ENST00000562078 CYP2D7A0A087X1C5 515 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms